C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005XU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152705-ENSG00000069011 CGP 9606 5:134967906-135034813
GeneTranscriptPositionBiotype
ENSG00000069011 (PITX1)
paired-like homeodomain 1 		ENST00000265340 (PITX1-001) 135027735-135034298 protein_coding
ENST00000502676 (PITX1-003) 135031336-135034757 protein_coding
ENST00000503586 (PITX1-005) 135029222-135033135 protein_coding
ENST00000504936 (PITX1-006) 135029287-135032010 retained_intron
ENST00000506438 (PITX1-002) 135028553-135034634 protein_coding
ENST00000507253 (PITX1-004) 135031286-135034813 protein_coding
ENSG00000132570 (PCBD2)
pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 		ENST00000254908 (PCBD2-001) 134904906-134961277 protein_coding
ENST00000504352 (PCBD2-005) 134905173-135007959 nonsense_mediated_decay
ENST00000510013 (PCBD2-004) 134908830-134959095 processed_transcript
ENST00000512783 (PCBD2-002) 134905120-134969660 protein_coding
ENSG00000152705 (CATSPER3)
cation channel, sperm associated 3 		ENST00000282611 (CATSPER3-001) 134967906-135011707 protein_coding
ENST00000511235 (CATSPER3-002) 134967907-134995854 processed_transcript
ENSG00000277619 (CTC-276P9.4)
 ENST00000620001 (CTC-276P9.4-001) 135034521-135035894 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0005XU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021499-ENSMUSG00000021506 CGP 10090 13:55784568-55836192
GeneTranscriptPositionBiotype
ENSMUSG00000021499 (Catsper3)
cation channel, sperm associated 3 		ENSMUST00000021961 (Catsper3-001) 55784568-55808967 protein_coding
ENSMUST00000109898 (Catsper3-002) 55784579-55808998 protein_coding
ENSMUSG00000021506 (Pitx1)
paired-like homeodomain transcription factor 1 		ENSMUST00000021968 (Pitx1-001) 55825051-55831425 protein_coding
ENSMUST00000173618 (Pitx1-002) 55828474-55836192 protein_coding
ENSMUSG00000100096 (RP23-44N12.3)
predicted gene 28760 		ENSMUST00000185995 (RP23-44N12.3-002) 55835360-55836095 lincRNA
ENSMUST00000190376 (RP23-44N12.3-001) 55835360-55836092 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XU_0001ENSG00000069011ENST00000265340ENST00000502676ENST00000503586ENST00000504936ENST00000506438ENST00000507253ENSG00000132570ENST00000254908ENST00000504352ENST00000510013ENST00000512783ENSG00000152705ENST00000282611ENST00000511235ENSG00000277619ENST00000620001CIL_0005XU_0002ENSMUSG00000021499ENSMUST00000021961ENSMUST00000109898ENSMUSG00000021506ENSMUST00000021968ENSMUST00000173618ENSMUSG00000100096ENSMUST00000185995ENSMUST00000190376
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XU_0001ENSG00000069011ENST00000265340ENST00000506438ENSG00000132570ENST00000254908ENST00000510013ENST00000512783ENSG00000152705ENST00000282611ENSG00000277619ENST00000620001CIL_0005XU_0002ENSMUSG00000021499ENSMUST00000021961ENSMUST00000109898ENSMUSG00000021506ENSMUST00000021968ENSMUST00000173618ENSMUSG00000100096ENSMUST00000185995ENSMUST00000190376
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000069011 ENST00000265340 N/A 0.297±0.00 N/A N/A N/A 0.256±0.00 0.019±0.00 0.110±0.00 1.070±0.00 1.467±0.00 11.019±0.00 6.547±7.11 1.621±0.54 0.697±0.00
ENST00000502676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506438 0.298±0.00 N/A N/A N/A 1.540±0.00 N/A N/A N/A 2.145±0.00 N/A N/A 3.851±2.72 1.414±0.46 0.639±0.00
ENST00000507253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000132570 ENST00000254908 1.098±0.00 1.927±0.00 N/A 0.909±0.39 1.611±0.85 0.944±0.00 5.153±0.00 2.281±1.28 1.652±0.07 1.008±0.00 4.709±0.97 1.754±0.09 1.454±0.13 N/A
ENST00000504352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.659±0.00 N/A N/A
ENST00000512783 0.439±0.00 0.767±0.00 0.683±0.00 0.425±0.00 0.743±0.50 0.333±0.00 0.522±0.30 0.708±0.59 0.570±0.06 0.460±0.31 1.008±0.70 0.579±0.16 0.205±0.09 0.817±0.10
ENSG00000152705 ENST00000282611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.752±0.00 N/A 21.097±4.85
ENST00000511235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277619 ENST00000620001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.123±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021499 ENSMUST00000021961 0.063±0.01 0.175±0.10 0.111±0.00 0.020±0.01 0.063±0.03 0.069±0.00 0.053±0.03 0.117±0.08 0.030±0.02 0.126±0.05 0.041±0.03 0.127±0.03 0.015±0.00 32.754±12.79
ENSMUST00000109898 0.060±0.01 0.068±0.00 0.124±0.04 0.165±0.15 0.035±0.01 N/A 0.006±0.00 0.097±0.04 0.071±0.08 N/A 0.042±0.02 0.189±0.17 0.065±0.00 9.601±0.05
ENSMUSG00000021506 ENSMUST00000021968 0.424±0.38 0.052±0.02 37.583±1.66 0.219±0.17 0.234±0.14 9.336±0.69 0.044±0.01 0.038±0.02 0.063±0.08 3.054±3.13 0.108±0.07 0.388±0.16 4.537±3.16 0.067±0.02
ENSMUST00000173618 N/A 0.073±0.03 N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A 0.137±0.06 N/A N/A N/A
ENSMUSG00000100096 ENSMUST00000185995 N/A N/A N/A N/A 0.121±0.00 N/A 0.046±0.00 N/A 0.020±0.00 N/A N/A N/A N/A 0.051±0.00
ENSMUST00000190376 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A

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