C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005YK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111424-ENSG00000134291 CGP 9606 12:47841537-47968878
GeneTranscriptPositionBiotype
ENSG00000111424 (VDR)
vitamin D (1,25- dihydroxyvitamin D3) receptor 		ENST00000229022 (VDR-201) 47841539-47905031 protein_coding
ENST00000395324 (VDR-001) 47841537-47943048 protein_coding
ENST00000546653 (VDR-007) 47855634-47905016 protein_coding
ENST00000547065 (VDR-003) 47844470-47905022 nonsense_mediated_decay
ENST00000548664 (VDR-006) 47857661-47905040 protein_coding
ENST00000549336 (VDR-004) 47841537-47905022 protein_coding
ENST00000550314 (VDR-008) 47857648-47882935 protein_coding
ENST00000550325 (VDR-002) 47842628-47905003 protein_coding
ENSG00000134291 (TMEM106C)
transmembrane protein 106C 		ENST00000256686 (TMEM106C-002) 47963584-47968849 protein_coding
ENST00000429772 (TMEM106C-001) 47963620-47968878 protein_coding
ENST00000449758 (TMEM106C-003) 47963635-47968849 protein_coding
ENST00000546749 (TMEM106C-010) 47963607-47966726 protein_coding
ENST00000547136 (TMEM106C-017) 47965653-47966450 retained_intron
ENST00000547682 (TMEM106C-019) 47965928-47968488 protein_coding
ENST00000548153 (TMEM106C-006) 47963596-47965522 retained_intron
ENST00000548355 (TMEM106C-020) 47964213-47968336 nonsense_mediated_decay
ENST00000548640 (TMEM106C-015) 47963858-47968187 protein_coding
ENST00000548965 (TMEM106C-021) 47964241-47968211 protein_coding
ENST00000549287 (TMEM106C-018) 47966556-47968488 retained_intron
ENST00000549288 (TMEM106C-008) 47963596-47968200 protein_coding
ENST00000550146 (TMEM106C-007) 47963569-47968263 nonsense_mediated_decay
ENST00000550161 (TMEM106C-013) 47963635-47967065 protein_coding
ENST00000550552 (TMEM106C-012) 47963609-47968256 protein_coding
ENST00000551305 (TMEM106C-005) 47963584-47968171 retained_intron
ENST00000551705 (TMEM106C-014) 47963638-47965665 retained_intron
ENST00000552187 (TMEM106C-009) 47963601-47964765 retained_intron
ENST00000552546 (TMEM106C-011) 47963607-47968376 protein_coding
ENST00000552561 (TMEM106C-004) 47963605-47968229 protein_coding
ENST00000553217 (TMEM106C-016) 47964209-47968434 nonsense_mediated_decay
ENST00000615597 (TMEM106C-022) 47965964-47967192 protein_coding
ENSG00000278385 (RP11-89H19.2)
 ENST00000622535 (RP11-89H19.2-001) 47905122-47906865 lincRNA
ENSG00000279840 (RP1-228P16.9)
 ENST00000624535 (RP1-228P16.9-001) 47960497-47963469 TEC
CIL_0005YK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022479-ENSMUSG00000052369 CGP 10090 15:97854425-97970286
GeneTranscriptPositionBiotype
ENSMUSG00000022479 (Vdr)
vitamin D receptor 		ENSMUST00000023119 (Vdr-001) 97854425-97908310 protein_coding
ENSMUST00000126568 (Vdr-002) 97876776-97896813 protein_coding
ENSMUST00000139656 (Vdr-003) 97857537-97859698 retained_intron
ENSMUST00000173104 (Vdr-006) 97876848-97910630 protein_coding
ENSMUST00000173611 (Vdr-005) 97884889-97909562 protein_coding
ENSMUST00000174633 (Vdr-004) 97884877-97910630 protein_coding
ENSMUSG00000052369 (Tmem106c)
transmembrane protein 106C 		ENSMUST00000064200 (Tmem106c-201) 97964229-97970286 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YK_0001ENSG00000111424ENST00000229022ENST00000546653ENST00000547065ENST00000549336ENST00000550314ENST00000550325ENSG00000134291ENST00000256686ENST00000429772ENST00000449758ENST00000546749ENST00000547682ENST00000548355ENST00000548640ENST00000549287ENST00000549288ENST00000550146ENST00000550552ENST00000551305ENST00000552546ENST00000552561ENST00000553217ENSG00000278385ENST00000622535ENSG00000279840ENST00000624535CIL_0005YK_0002ENSMUSG00000022479ENSMUST00000023119ENSMUST00000126568ENSMUST00000139656ENSMUSG00000052369ENSMUST00000064200
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111424 ENST00000229022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.433±0.00 0.303±0.00 N/A
ENST00000395324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546653 N/A N/A N/A N/A 1.242±0.00 N/A N/A 0.066±0.00 N/A N/A N/A 1.907±0.00 N/A N/A
ENST00000547065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.140±0.00 N/A 0.731±0.00
ENST00000548664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549336 1.377±0.00 N/A 0.875±0.00 0.068±0.00 2.093±0.00 2.184±0.03 N/A 1.401±1.39 N/A N/A N/A 0.889±0.52 1.157±0.10 0.526±0.00
ENST00000550314 N/A N/A N/A N/A N/A N/A N/A N/A 1.575±0.00 1.566±0.00 N/A N/A N/A N/A
ENST00000550325 N/A N/A 1.228±0.00 N/A 0.419±0.00 2.202±0.00 0.033±0.00 N/A 0.277±0.00 0.799±0.00 N/A 0.311±0.00 N/A N/A
ENSG00000134291 ENST00000256686 1.093±0.00 5.678±0.00 N/A 1.531±0.00 N/A N/A N/A N/A 2.108±1.59 3.954±2.92 1.040±0.00 15.540±2.76 14.471±4.68 7.781±1.02
ENST00000429772 N/A N/A N/A N/A N/A 4.841±0.00 N/A 6.973±0.00 N/A N/A N/A 13.287±0.00 5.335±1.34 9.335±0.84
ENST00000449758 2.751±0.00 N/A N/A 2.444±0.00 N/A N/A 5.364±0.00 4.730±0.00 N/A N/A N/A N/A 9.317±0.00 N/A
ENST00000546749 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.062±0.00 N/A N/A N/A N/A
ENST00000547136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547682 N/A N/A 3.033±0.00 3.775±0.00 8.397±0.00 10.421±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548355 3.071±0.00 N/A N/A 5.904±0.00 6.606±0.00 14.571±0.00 N/A 12.947±0.00 N/A 4.593±0.00 N/A N/A N/A 18.472±0.00
ENST00000548640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.355±0.00 N/A N/A N/A
ENST00000548965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549287 N/A N/A N/A N/A 7.276±0.00 N/A 1.445±0.00 N/A 1.544±0.00 N/A N/A N/A N/A N/A
ENST00000549288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.120±0.00 N/A N/A N/A
ENST00000550146 N/A N/A N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A N/A 5.840±0.00 N/A N/A
ENST00000550161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550552 N/A N/A 4.266±0.00 4.493±0.00 4.748±0.00 10.401±0.00 4.800±3.65 2.257±0.00 N/A 1.967±0.00 1.967±1.60 N/A N/A N/A
ENST00000551305 N/A N/A N/A N/A N/A N/A N/A N/A 0.503±0.00 N/A N/A N/A N/A N/A
ENST00000551705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552546 N/A N/A 1.231±0.00 5.615±0.00 6.067±0.00 6.225±0.00 N/A N/A 1.188±0.00 N/A 0.981±0.00 10.059±0.00 N/A N/A
ENST00000552561 N/A N/A N/A N/A N/A 7.423±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.622±0.00 N/A N/A N/A
ENST00000615597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000278385 ENST00000622535 0.017±0.00 0.053±0.00 0.371±0.00 0.020±0.00 0.377±0.09 0.360±0.29 0.075±0.00 0.556±0.00 0.016±0.00 0.097±0.00 N/A 0.315±0.14 0.155±0.04 2.708±1.11
ENSG00000279840 ENST00000624535 0.129±0.00 0.400±0.00 N/A 0.269±0.00 0.092±0.00 0.134±0.00 0.125±0.00 0.148±0.06 0.037±0.00 0.104±0.00 0.041±0.00 0.028±0.00 0.027±0.00 0.108±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022479 ENSMUST00000023119 0.466±0.26 2.542±1.04 0.548±0.01 0.064±0.06 3.148±0.29 79.808±3.38 0.628±0.19 41.876±5.19 0.024±0.01 2.214±0.20 0.039±0.03 1.377±0.32 1.717±0.96 1.503±0.41
ENSMUST00000126568 N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139656 N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052369 ENSMUST00000064200 13.265±7.20 15.081±3.95 17.789±1.32 10.018±4.75 14.424±9.00 9.638±2.04 5.572±1.35 13.052±6.25 7.781±2.68 12.007±1.43 1.733±0.49 13.341±7.50 2.110±0.94 15.914±7.50

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