C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ZG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000046074-ENSDARG00000089348 CGP 7955 2:59873261-59915834
GeneTranscriptPositionBiotype
ENSDARG00000046074 (stk11)
serine/threonine kinase 11 		ENSDART00000067736 (stk11-001) 59873261-59895753 protein_coding
ENSDARG00000089348 (C2H19orf26 (2 of 2))
chromosome 19 open reading frame 26 		ENSDART00000122394 (C2H19orf26 (2 of 2)-201) 59908055-59915834 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005ZG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000118046-ENSG00000099625 CGP 9606 19:1177558-1238027
GeneTranscriptPositionBiotype
ENSG00000118046 (STK11)
serine/threonine kinase 11 		ENST00000326873 (STK11-001) 1206464-1228435 protein_coding
ENST00000585465 (STK11-003) 1223148-1228095 retained_intron
ENST00000585748 (STK11-007) 1177558-1219386 protein_coding
ENST00000585851 (STK11-004) 1206869-1220617 protein_coding
ENST00000586243 (STK11-201) 1205805-1228094 protein_coding
ENST00000586358 (STK11-005) 1207091-1221958 retained_intron
ENST00000589152 (STK11-002) 1206824-1228012 retained_intron
ENST00000591133 (STK11-006) 1220013-1223104 retained_intron
ENST00000593219 (STK11-009) 1206816-1219357 nonsense_mediated_decay
ENSG00000267736 (HMGB2P1)
high mobility group box 2 pseudogene 1 		ENST00000591146 (HMGB2P1-001) 1203209-1203842 transcribed_processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005ZG_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003068-ENSMUSG00000035640 CGP 10090 10:80115803-80140835
GeneTranscriptPositionBiotype
ENSMUSG00000003068 (Stk11)
serine/threonine kinase 11 		ENSMUST00000003152 (Stk11-001) 80115803-80130682 protein_coding
ENSMUST00000105370 (Stk11-003) 80125375-80130675 protein_coding
ENSMUST00000105371 (Stk11-004) 80116347-80130470 nonsense_mediated_decay
ENSMUST00000128992 (Stk11-005) 80116354-80117814 processed_transcript
ENSMUST00000129235 (Stk11-008) 80125375-80126509 retained_intron
ENSMUST00000144108 (Stk11-009) 80126386-80128199 retained_intron
ENSMUST00000144119 (Stk11-007) 80124819-80129975 retained_intron
ENSMUST00000144883 (Stk11-002) 80115803-80130469 nonsense_mediated_decay
ENSMUST00000152592 (Stk11-006) 80126682-80130470 protein_coding
ENSMUSG00000003072 (Atp5d)
ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit 		ENSMUST00000003156 (Atp5d-201) 80142315-80145818 protein_coding
ENSMUST00000105366 (Atp5d-003) 80142370-80145812 protein_coding
ENSMUST00000105367 (Atp5d-002) 80141457-80145813 protein_coding
ENSMUST00000150347 (Atp5d-001) 80138632-80142400 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZG_0001ENSDARG00000046074ENSDART00000067736ENSDARG00000089348ENSDART00000122394CIL_0005ZG_0002ENSG00000118046ENST00000326873ENST00000585465ENST00000585748ENST00000585851ENST00000586243ENST00000586358ENST00000589152ENST00000591133ENST00000593219ENSG00000267736ENST00000591146CIL_0005ZG_0003ENSMUSG00000003068ENSMUST00000003152ENSMUST00000105370ENSMUST00000105371ENSMUST00000128992ENSMUST00000129235ENSMUST00000144108ENSMUST00000144119ENSMUST00000144883ENSMUST00000152592ENSMUSG00000003072ENSMUST00000003156ENSMUST00000105366ENSMUST00000105367ENSMUST00000150347
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZG_0001ENSDARG00000046074ENSDART00000067736ENSDARG00000089348ENSDART00000122394CIL_0005ZG_0002ENSG00000118046ENST00000326873ENST00000585465ENST00000585851ENST00000586243ENST00000586358ENSG00000267736ENST00000591146CIL_0005ZG_0003ENSMUSG00000003068ENSMUST00000003152ENSMUST00000105370ENSMUST00000105371ENSMUST00000144108ENSMUST00000144119ENSMUST00000144883ENSMUST00000152592ENSMUSG00000003072ENSMUST00000003156ENSMUST00000105366
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000046074 ENSDART00000067736 N/A N/A N/A 9.124±6.52 N/A N/A 9.573±2.32 3.863±3.65 1.977±0.00 N/A 8.032±0.00 N/A N/A N/A
ENSDARG00000089348 ENSDART00000122394 N/A N/A N/A 3.387±2.22 N/A N/A 0.043±0.01 N/A 0.015±0.00 N/A 0.344±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118046 ENST00000326873 8.948±0.00 8.208±0.00 N/A 4.013±0.86 8.148±0.00 5.934±3.66 3.944±1.22 4.277±2.48 3.160±1.39 2.775±2.18 7.886±5.52 6.880±1.97 11.551±4.75 18.251±0.00
ENST00000585465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.143±0.00 N/A N/A
ENST00000585748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585851 N/A N/A N/A 16.786±0.00 22.323±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586243 22.587±0.00 17.432±0.00 1.838±0.00 6.094±4.16 9.272±7.92 8.233±6.15 19.435±0.00 9.532±7.08 5.114±3.59 12.164±10.61 33.056±26.63 23.442±17.52 18.956±3.48 159.003±98.24
ENST00000586358 N/A N/A N/A N/A N/A N/A N/A N/A 2.027±0.00 2.057±0.00 N/A N/A N/A N/A
ENST00000589152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267736 ENST00000591146 0.022±0.00 0.024±0.00 N/A 0.024±0.00 0.024±0.00 0.082±0.06 N/A 0.024±0.00 N/A N/A 0.022±0.00 0.094±0.04 0.020±0.00 0.248±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003068 ENSMUST00000003152 43.592±4.81 N/A 25.706±0.99 23.217±2.47 N/A N/A 28.446±0.00 N/A 29.831±5.22 62.674±10.75 33.696±3.49 26.060±0.00 22.375±3.97 20.851±1.80
ENSMUST00000105370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.760±0.00 N/A
ENSMUST00000105371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.166±6.75
ENSMUST00000128992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 97.146±0.00
ENSMUST00000144119 N/A N/A N/A 136.103±0.00 29.179±0.00 N/A N/A N/A N/A N/A N/A 82.617±38.94 150.361±24.73 152.225±0.00
ENSMUST00000144883 N/A N/A N/A N/A N/A N/A N/A N/A 16.751±0.75 N/A N/A 9.747±0.00 N/A 17.959±2.74
ENSMUST00000152592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 108.222±0.00 N/A N/A
ENSMUSG00000003072 ENSMUST00000003156 387.401±76.38 666.326±130.48 216.080±9.34 265.468±28.87 659.558±302.35 974.630±126.83 679.691±232.84 936.324±117.97 439.683±210.63 362.706±45.39 280.823±21.02 607.936±272.17 228.438±47.08 133.889±22.88
ENSMUST00000105366 N/A 1600.642±176.56 N/A N/A 352.679±50.01 403.617±160.06 N/A N/A N/A N/A N/A 722.777±98.76 N/A N/A
ENSMUST00000105367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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