C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000605_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017661-ENSDARG00000020015 CGP 7955 4:11139300-11170563
GeneTranscriptPositionBiotype
ENSDARG00000017661 (braf)
v-raf murine sarcoma viral oncogene homolog B1 		ENSDART00000023894 (braf-001) 11139564-11166560 protein_coding
ENSDART00000048391 (braf-003) 11139300-11166549 protein_coding
ENSDART00000132650 (braf-002) 11142856-11166549 retained_intron
ENSDARG00000020015 (mrps33)
mitochondrial ribosomal protein S33 		ENSDART00000048675 (mrps33-001) 11166791-11170563 protein_coding
ENSDART00000139561 (mrps33-002) 11168356-11168945 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000605_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157764-ENSG00000090263 CGP 9606 7:140719327-141015228
GeneTranscriptPositionBiotype
ENSG00000090263 (MRPS33)
mitochondrial ribosomal protein S33 		ENST00000324787 (MRPS33-001) 141006161-141014983 protein_coding
ENST00000393008 (MRPS33-002) 141006054-141014679 protein_coding
ENST00000467334 (MRPS33-003) 141006169-141014966 protein_coding
ENST00000469351 (MRPS33-009) 141006168-141015228 protein_coding
ENST00000472343 (MRPS33-007) 141006168-141010094 processed_transcript
ENST00000484502 (MRPS33-006) 141006168-141014648 processed_transcript
ENST00000485202 (MRPS33-005) 141010228-141014652 retained_intron
ENST00000496641 (MRPS33-004) 141010159-141014949 retained_intron
ENST00000496958 (MRPS33-008) 141006168-141014429 protein_coding
ENSG00000090266 (NDUFB2)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa 		ENST00000247866 (NDUFB2-001) 140696672-140706646 protein_coding
ENST00000460088 (NDUFB2-008) 140696988-140706646 protein_coding
ENST00000461457 (NDUFB2-004) 140696688-140721955 protein_coding
ENST00000462847 (NDUFB2-014) 140700193-140701104 processed_transcript
ENST00000464564 (NDUFB2-006) 140696709-140704963 processed_transcript
ENST00000464566 (NDUFB2-007) 140696748-140706500 protein_coding
ENST00000465506 (NDUFB2-005) 140696690-140705662 protein_coding
ENST00000471136 (NDUFB2-011) 140697224-140706644 protein_coding
ENST00000472695 (NDUFB2-009) 140696992-140706643 protein_coding
ENST00000475276 (NDUFB2-015) 140701845-140706642 protein_coding
ENST00000476181 (NDUFB2-002) 140696710-140706646 nonsense_mediated_decay
ENST00000476279 (NDUFB2-003) 140696671-140722790 protein_coding
ENST00000476470 (NDUFB2-010) 140697157-140706640 protein_coding
ENST00000479181 (NDUFB2-012) 140702523-140706635 retained_intron
ENST00000482954 (NDUFB2-013) 140690777-140706646 protein_coding
ENSG00000157764 (BRAF)
B-Raf proto-oncogene, serine/threonine kinase 		ENST00000288602 (BRAF-001) 140734479-140924764 protein_coding
ENST00000469930 (BRAF-004) 140834061-140924709 retained_intron
ENST00000479537 (BRAF-005) 140734521-140754211 nonsense_mediated_decay
ENST00000496384 (BRAF-003) 140719327-140783157 protein_coding
ENST00000497784 (BRAF-002) 140734597-140924658 nonsense_mediated_decay
ENSG00000242703 (CCT4P1)
chaperonin containing TCP1, subunit 4 (delta) pseudogene 1 		ENST00000475327 (CCT4P1-001) 140997952-140999800 processed_pseudogene
ENSG00000273081 (RP4-813F11.4)
 ENST00000610021 (RP4-813F11.4-001) 141002610-141004849 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000605_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002413-ENSMUSG00000029918 CGP 10090 6:39603237-39810988
GeneTranscriptPositionBiotype
ENSMUSG00000002413 (Braf)
Braf transforming gene 		ENSMUST00000002487 (Braf-001) 39603237-39725463 protein_coding
ENSMUST00000101497 (Braf-002) 39614112-39725193 protein_coding
ENSMUST00000167073 (Braf-003) 39639292-39644786 retained_intron
ENSMUST00000167169 (Braf-004) 39640307-39643254 retained_intron
ENSMUST00000169647 (Braf-005) 39651579-39665079 retained_intron
ENSMUSG00000002416 (Ndufb2)
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 		ENSMUST00000002490 (Ndufb2-004) 39592585-39599422 processed_transcript
ENSMUST00000119379 (Ndufb2-002) 39592583-39599471 protein_coding
ENSMUST00000128064 (Ndufb2-003) 39597264-39599292 retained_intron
ENSMUST00000135239 (Ndufb2-006) 39601781-39603310 processed_transcript
ENSMUST00000135671 (Ndufb2-001) 39592574-39603382 protein_coding
ENSMUST00000146793 (Ndufb2-005) 39592588-39596747 retained_intron
ENSMUSG00000029918 (Mrps33)
mitochondrial ribosomal protein S33 		ENSMUST00000031978 (Mrps33-001) 39801804-39810988 protein_coding
ENSMUST00000114797 (Mrps33-002) 39802192-39810885 protein_coding
ENSMUST00000139992 (Mrps33-003) 39805242-39810893 processed_transcript
ENSMUSG00000091313 (Fth-ps2)
ferritin heavy chain, pseudogene 2 		ENSMUST00000168364 (Fth-ps2-001) 39653450-39653965 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000605_0001ENSDARG00000017661ENSDART00000023894ENSDART00000048391ENSDART00000132650ENSDARG00000020015ENSDART00000048675ENSDART00000139561CIL_000605_0002ENSG00000090263ENST00000324787ENST00000393008ENST00000467334ENST00000469351ENST00000472343ENST00000484502ENST00000485202ENST00000496641ENST00000496958ENSG00000090266ENST00000247866ENST00000460088ENST00000461457ENST00000462847ENST00000464564ENST00000464566ENST00000465506ENST00000471136ENST00000472695ENST00000475276ENST00000476181ENST00000476279ENST00000476470ENST00000479181ENST00000482954ENSG00000157764ENST00000288602ENST00000469930ENST00000479537ENST00000496384ENST00000497784ENSG00000242703ENST00000475327ENSG00000273081ENST00000610021CIL_000605_0003ENSMUSG00000002413ENSMUST00000002487ENSMUST00000101497ENSMUST00000167073ENSMUST00000167169ENSMUST00000169647ENSMUSG00000002416ENSMUST00000002490ENSMUST00000119379ENSMUST00000128064ENSMUST00000135239ENSMUST00000135671ENSMUST00000146793ENSMUSG00000029918ENSMUST00000031978ENSMUST00000114797ENSMUST00000139992ENSMUSG00000091313ENSMUST00000168364
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000605_0001ENSDARG00000017661ENSDART00000023894ENSDART00000048391ENSDART00000132650ENSDARG00000020015ENSDART00000048675ENSDART00000139561CIL_000605_0002ENSG00000090263ENST00000324787ENST00000393008ENST00000467334ENST00000469351ENST00000485202ENST00000496641ENST00000496958ENSG00000090266ENST00000247866ENST00000460088ENSG00000157764ENST00000288602ENST00000496384ENST00000497784ENSG00000242703ENST00000475327ENSG00000273081ENST00000610021CIL_000605_0003ENSMUSG00000002413ENSMUST00000002487ENSMUST00000101497ENSMUSG00000002416ENSMUST00000002490ENSMUST00000119379ENSMUST00000135671ENSMUST00000146793ENSMUSG00000029918ENSMUST00000031978ENSMUST00000114797ENSMUST00000139992ENSMUSG00000091313ENSMUST00000168364
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017661 ENSDART00000023894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.00 N/A N/A N/A
ENSDART00000048391 N/A N/A N/A 4.350±0.00 N/A N/A 3.221±2.12 0.809±0.11 0.095±0.00 N/A 0.854±0.00 N/A N/A N/A
ENSDART00000132650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.414±0.00 N/A N/A N/A
ENSDARG00000020015 ENSDART00000048675 N/A N/A N/A 2.786±1.12 N/A N/A 5.570±1.27 1.984±0.20 0.065±0.00 N/A 1.584±0.00 N/A N/A N/A
ENSDART00000139561 N/A N/A N/A 6.714±3.52 N/A N/A 16.430±1.22 8.511±0.00 0.709±0.00 N/A 5.369±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000090263 ENST00000324787 12.018±0.00 16.420±0.00 1.520±0.00 6.514±2.01 23.546±0.00 10.900±7.18 16.780±13.84 14.938±11.77 8.633±6.44 7.921±0.00 10.470±4.77 21.211±7.13 14.198±2.38 15.409±12.18
ENST00000393008 N/A N/A N/A 5.859±2.07 1.993±0.00 N/A N/A 4.932±0.00 1.197±0.00 1.700±0.36 N/A 5.571±0.92 3.106±0.75 3.598±0.00
ENST00000467334 5.080±0.00 6.904±0.00 N/A 14.686±0.00 14.307±0.00 15.809±0.00 6.330±4.35 1.016±0.00 5.341±3.95 N/A 7.474±0.00 7.765±2.61 5.598±2.16 19.272±0.00
ENST00000469351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.159±0.00 N/A 12.426±0.00
ENST00000472343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485202 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.623±0.00 N/A N/A N/A N/A
ENST00000496641 N/A N/A N/A N/A N/A 1.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496958 N/A N/A 0.607±0.00 N/A 4.012±0.00 1.022±0.00 N/A N/A N/A N/A 7.054±0.00 N/A N/A N/A
ENSG00000090266 ENST00000247866 80.743±0.00 136.994±0.00 N/A 117.153±0.00 135.660±0.00 108.438±0.00 151.320±117.82 135.331±101.21 89.663±0.00 124.723±0.00 65.920±11.53 125.292±21.60 139.752±40.93 160.141±0.00
ENST00000460088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.389±0.00 N/A N/A N/A
ENST00000461457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157764 ENST00000288602 N/A N/A 3.252±0.00 N/A 7.555±0.00 N/A N/A 2.127±0.00 8.827±0.00 7.913±0.00 2.458±0.00 5.636±0.00 N/A 18.078±0.00
ENST00000469930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496384 N/A N/A N/A 3.070±0.46 4.610±0.00 1.626±0.00 N/A 3.939±0.00 N/A 2.224±0.00 0.808±0.00 2.454±0.65 1.477±0.00 N/A
ENST00000497784 N/A N/A N/A 11.575±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242703 ENST00000475327 N/A 0.007±0.00 N/A N/A N/A N/A 0.006±0.00 N/A N/A N/A 0.006±0.00 N/A N/A 0.104±0.04
ENSG00000273081 ENST00000610021 0.097±0.00 0.385±0.00 0.334±0.00 1.171±0.22 0.404±0.11 0.563±0.10 0.253±0.08 0.758±0.40 0.343±0.15 0.190±0.02 0.056±0.01 0.471±0.19 0.213±0.08 0.681±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002413 ENSMUST00000002487 N/A N/A 4.047±0.00 7.056±2.73 3.576±0.00 2.695±0.00 3.151±0.80 3.508±0.25 3.271±0.69 4.316±0.00 1.150±0.16 4.221±0.53 N/A 2.505±1.65
ENSMUST00000101497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.123±0.00 N/A 14.025±3.90
ENSMUST00000167073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000002416 ENSMUST00000002490 N/A N/A N/A 286.829±0.00 120.162±0.00 N/A 86.207±0.00 N/A N/A N/A 112.681±21.13 286.519±0.00 344.845±209.56 N/A
ENSMUST00000119379 136.679±34.48 391.384±122.92 198.738±0.00 227.101±112.78 142.781±87.67 81.188±5.70 389.834±28.32 207.503±40.75 174.825±59.96 59.548±13.79 199.908±19.81 127.220±87.99 311.929±289.21 83.390±29.32
ENSMUST00000128064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135671 N/A N/A N/A 5.195±0.79 N/A N/A N/A N/A 3.161±0.35 N/A 2.127±0.33 N/A 3.395±0.00 N/A
ENSMUST00000146793 63.144±3.70 283.995±118.93 N/A N/A 211.555±78.71 113.981±36.79 203.072±4.15 123.408±32.45 N/A 62.028±6.77 N/A 101.931±27.01 N/A N/A
ENSMUSG00000029918 ENSMUST00000031978 3.158±0.35 0.939±0.46 8.380±1.20 8.711±3.02 1.530±0.62 1.022±0.28 4.341±0.51 3.518±0.41 6.374±5.67 2.470±0.20 10.628±0.54 3.260±3.79 6.622±3.83 1.167±0.49
ENSMUST00000114797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.478±0.00 N/A N/A
ENSMUST00000139992 31.036±1.23 4.966±1.87 31.961±10.22 66.832±13.41 14.584±4.17 9.500±1.36 45.751±12.90 25.871±5.15 27.346±18.89 18.212±5.68 N/A 7.050±1.70 23.270±14.27 9.119±4.41
ENSMUSG00000091313 ENSMUST00000168364 0.166±0.07 N/A 0.085±0.00 1.166±0.80 0.369±0.39 0.559±0.23 0.089±0.00 0.258±0.10 0.199±0.08 0.375±0.11 N/A 0.722±0.55 0.800±0.38 0.346±0.24

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