C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000622_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030236-ENSDARG00000078419 CGP 7955 17:50512329-50532303
GeneTranscriptPositionBiotype
ENSDARG00000030236 (tmem30aa)
transmembrane protein 30Aa 		ENSDART00000122747 (tmem30aa-001) 50512329-50524291 protein_coding
ENSDARG00000078419 (filip1a)
filamin A interacting protein 1a 		ENSDART00000112267 (filip1a-001) 50528157-50532303 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000622_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000112697-ENSG00000118407 CGP 9606 6:75252924-75493738
GeneTranscriptPositionBiotype
ENSG00000112697 (TMEM30A)
transmembrane protein 30A 		ENST00000230461 (TMEM30A-002) 75252924-75284968 protein_coding
ENST00000370050 (TMEM30A-003) 75253613-75272900 protein_coding
ENST00000475111 (TMEM30A-001) 75254599-75284948 protein_coding
ENST00000518161 (TMEM30A-004) 75259442-75284311 protein_coding
ENSG00000118407 (FILIP1)
filamin A interacting protein 1 		ENST00000237172 (FILIP1-001) 75308084-75493738 protein_coding
ENST00000370020 (FILIP1-002) 75308092-75363003 protein_coding
ENST00000393004 (FILIP1-004) 75291859-75493629 protein_coding
ENST00000498523 (FILIP1-003) 75308088-75334790 processed_transcript
ENSG00000201291 (RNU1-34P)
RNA, U1 small nuclear 34, pseudogene 		ENST00000364421 (RNU1-34P-201) 75473738-75473894 snRNA
ENSG00000203489 (HMGB1P39)
high mobility group box 1 pseudogene 39 		ENST00000366304 (HMGB1P39-001) 75319101-75319980 processed_pseudogene
ENSG00000217680 (RP11-415D17.1)
 ENST00000407776 (RP11-415D17.1-001) 75465123-75465570 processed_pseudogene
ENSG00000221332 (U3)
Small nucleolar RNA U3 		ENST00000408405 (U3.1-238) 75398860-75399067 snoRNA
ENSG00000238156 (RP11-415D17.4)
 ENST00000455530 (RP11-415D17.4-001) 75454944-75458900 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000622_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032328-ENSMUSG00000034898 CGP 10090 9:79768943-79977804
GeneTranscriptPositionBiotype
ENSMUSG00000032328 (Tmem30a)
transmembrane protein 30A 		ENSMUST00000034878 (Tmem30a-001) 79768943-79793430 protein_coding
ENSMUST00000120690 (Tmem30a-002) 79768943-79793507 protein_coding
ENSMUST00000130419 (Tmem30a-004) 79776854-79793430 retained_intron
ENSMUST00000153815 (Tmem30a-003) 79772552-79793430 retained_intron
ENSMUSG00000034898 (Filip1)
filamin A interacting protein 1 		ENSMUST00000093811 (Filip1-001) 79815051-79977804 protein_coding
ENSMUST00000172740 (Filip1-003) 79815057-79830998 processed_transcript
ENSMUST00000172973 (Filip1-002) 79820661-79962033 protein_coding
ENSMUSG00000086918 (4930429F24Rik)
RIKEN cDNA 4930429F24 gene 		ENSMUST00000151676 (4930429F24Rik-001) 79793641-79803235 processed_transcript
ENSMUSG00000092565 (Gm20477)
predicted gene 20477 		ENSMUST00000174028 (Gm20477-001) 79838108-79838387 processed_pseudogene
ENSMUSG00000092581 (Gm3211)
predicted gene 3211 		ENSMUST00000172721 (Gm3211-001) 79913200-79913631 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000622_0001ENSDARG00000030236ENSDART00000122747ENSDARG00000078419ENSDART00000112267CIL_000622_0002ENSG00000112697ENST00000230461ENST00000370050ENST00000475111ENST00000518161ENSG00000118407ENST00000237172ENST00000370020ENST00000393004ENST00000498523ENSG00000201291ENST00000364421ENSG00000203489ENST00000366304ENSG00000217680ENST00000407776ENSG00000221332ENST00000408405ENSG00000238156ENST00000455530CIL_000622_0003ENSMUSG00000032328ENSMUST00000034878ENSMUST00000120690ENSMUST00000130419ENSMUST00000153815ENSMUSG00000034898ENSMUST00000093811ENSMUST00000172740ENSMUST00000172973ENSMUSG00000086918ENSMUST00000151676ENSMUSG00000092565ENSMUST00000174028ENSMUSG00000092581ENSMUST00000172721
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000622_0001ENSDARG00000030236ENSDART00000122747ENSDARG00000078419ENSDART00000112267CIL_000622_0002ENSG00000112697ENST00000230461ENST00000370050ENST00000475111ENSG00000118407ENST00000237172ENST00000370020ENST00000393004ENST00000498523ENSG00000201291ENST00000364421ENSG00000203489ENST00000366304ENSG00000217680ENST00000407776ENSG00000221332ENST00000408405ENSG00000238156ENST00000455530CIL_000622_0003ENSMUSG00000032328ENSMUST00000034878ENSMUST00000120690ENSMUST00000130419ENSMUST00000153815ENSMUSG00000034898ENSMUST00000093811ENSMUST00000172740ENSMUST00000172973ENSMUSG00000086918ENSMUST00000151676ENSMUSG00000092565ENSMUST00000174028ENSMUSG00000092581ENSMUST00000172721
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000030236 ENSDART00000122747 N/A N/A N/A 28.438±25.52 N/A N/A 12.585±9.50 N/A 2.754±0.00 N/A 9.628±0.00 N/A N/A N/A
ENSDARG00000078419 ENSDART00000112267 N/A N/A N/A 0.219±0.07 N/A N/A 5.980±5.15 0.480±0.19 0.182±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112697 ENST00000230461 31.468±0.00 30.275±0.00 8.192±0.00 34.782±18.67 15.678±8.10 19.810±10.96 8.314±4.85 21.966±10.47 12.073±2.26 27.170±11.98 5.841±3.28 13.809±3.12 12.130±1.87 18.007±7.81
ENST00000370050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A
ENST00000475111 N/A N/A N/A N/A 4.238±0.00 N/A N/A N/A N/A N/A N/A 4.168±0.00 N/A N/A
ENST00000518161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000118407 ENST00000237172 1.331±0.00 0.892±0.00 0.119±0.00 0.324±0.00 1.014±0.29 1.524±0.00 6.955±0.22 0.654±0.00 11.718±0.00 2.394±0.72 4.502±0.00 0.236±0.07 0.872±0.45 0.664±0.00
ENST00000370020 N/A N/A N/A 0.803±0.35 N/A N/A N/A 0.348±0.00 N/A N/A N/A 0.564±0.16 1.016±0.00 1.137±0.00
ENST00000393004 1.890±0.00 1.572±0.00 0.314±0.00 0.426±0.00 1.159±0.21 3.152±1.39 14.746±8.37 0.758±0.00 7.887±0.00 1.607±0.23 8.261±6.23 0.398±0.17 0.330±0.11 1.812±0.00
ENST00000498523 N/A N/A N/A N/A N/A 2.605±0.00 N/A N/A N/A 1.252±0.00 N/A 0.209±0.00 1.251±0.00 2.851±2.01
ENSG00000201291 ENST00000364421 N/A 0.373±0.00 N/A N/A N/A N/A 0.816±0.60 N/A N/A N/A N/A N/A N/A N/A
ENSG00000203489 ENST00000366304 0.072±0.00 0.245±0.00 N/A 0.146±0.05 0.197±0.03 0.121±0.07 0.346±0.15 0.096±0.00 0.114±0.08 0.083±0.05 0.086±0.00 0.143±0.10 0.079±0.02 0.116±0.09
ENSG00000217680 ENST00000407776 N/A 0.313±0.00 0.121±0.00 N/A 0.050±0.00 N/A 0.292±0.00 N/A N/A N/A N/A 0.064±0.00 N/A 0.043±0.00
ENSG00000221332 ENST00000408405 N/A N/A N/A 0.149±0.00 N/A N/A 0.463±0.00 N/A 0.938±0.00 N/A N/A N/A N/A 1.995±0.13
ENSG00000238156 ENST00000455530 N/A N/A N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A 0.052±0.00 0.087±0.00 0.085±0.02 0.421±0.37
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032328 ENSMUST00000034878 6.795±0.36 N/A 21.057±1.57 26.812±14.77 3.852±0.65 3.532±0.52 5.325±0.99 8.644±2.11 14.198±5.10 12.232±4.90 18.133±2.55 22.028±13.17 23.368±4.42 5.834±1.89
ENSMUST00000120690 N/A N/A N/A N/A 4.436±0.34 N/A N/A N/A N/A 4.801±0.00 N/A N/A N/A 6.067±1.63
ENSMUST00000130419 20.309±4.65 60.739±9.75 N/A N/A 23.606±11.61 27.008±2.20 8.638±0.69 21.215±8.47 23.579±1.97 38.000±14.16 N/A 31.121±6.48 N/A 27.336±1.45
ENSMUST00000153815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.469±0.00 4.211±0.34 N/A
ENSMUSG00000034898 ENSMUST00000093811 2.991±0.04 1.137±0.41 8.322±1.57 0.182±0.00 0.476±0.00 0.708±0.38 N/A 0.186±0.05 0.080±0.02 0.931±0.50 8.032±1.01 1.029±0.54 0.541±0.39 1.177±0.00
ENSMUST00000172740 2.304±1.22 4.328±1.88 1.812±0.82 0.494±0.19 0.680±0.28 1.490±0.53 3.483±0.67 0.224±0.08 0.101±0.04 2.032±0.91 N/A 1.584±0.96 0.382±0.33 8.327±12.74
ENSMUST00000172973 N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000086918 ENSMUST00000151676 1.913±0.82 2.851±1.10 4.973±0.11 0.267±0.00 0.974±0.33 0.580±0.28 6.508±1.81 0.394±0.10 0.117±0.04 2.051±0.80 N/A 0.918±0.55 0.139±0.13 2.837±0.87
ENSMUSG00000092565 ENSMUST00000174028 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.329±0.00 0.297±0.00 N/A N/A N/A
ENSMUSG00000092581 ENSMUST00000172721 N/A 0.625±0.06 0.091±0.03 N/A 1.451±0.71 N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.14

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