C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000643_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015072-ENSDARG00000008904 CGP 7955 5:46626544-46902718
GeneTranscriptPositionBiotype
ENSDARG00000008904 (smarca2)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 		ENSDART00000041412 (smarca2-001) 46757516-46902718 protein_coding
ENSDART00000113738 (smarca2-003) 46757778-46806873 protein_coding
ENSDART00000136002 (smarca2-002) 46757566-46801956 protein_coding
ENSDARG00000015072 (dmrt2a)
doublesex and mab-3 related transcription factor 2a 		ENSDART00000010786 (dmrt2a-001) 46626544-46629698 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000643_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000173253-ENSG00000080503 CGP 9606 9:1050354-2193624
GeneTranscriptPositionBiotype
ENSG00000173253 (DMRT2)
doublesex and mab-3 related transcription factor 2 		ENST00000259622 (DMRT2-003) 1051614-1057552 protein_coding
ENST00000302441 (DMRT2-201) 1051614-1057550 protein_coding
ENST00000358146 (DMRT2-001) 1051614-1057552 protein_coding
ENST00000382251 (DMRT2-202) 1050354-1057550 protein_coding
ENST00000382255 (DMRT2-004) 1050354-1057547 protein_coding
ENST00000412350 (DMRT2-002) 1050355-1055872 protein_coding
ENSG00000222973 (RNU2-25P)
RNA, U2 small nuclear 25, pseudogene 		ENST00000411041 (RNU2-25P-201) 2162763-2162953 snRNA
ENSG00000224836 (RP11-341G2.3)
 ENST00000443334 (RP11-341G2.3-001) 1151807-1152140 processed_pseudogene
ENSG00000236199 (RP11-264I13.2)
 ENST00000426860 (RP11-264I13.2-001) 2041900-2046023 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000643_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048138-ENSMUSG00000024921 CGP 10090 19:25672420-26778321
GeneTranscriptPositionBiotype
ENSMUSG00000024921 (Smarca2)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 		ENSMUST00000025862 (Smarca2-001) 26605115-26778321 protein_coding
ENSMUST00000099537 (Smarca2-002) 26607270-26778273 nonsense_mediated_decay
ENSMUST00000112637 (Smarca2-007) 26748459-26778273 protein_coding
ENSMUST00000175791 (Smarca2-010) 26748268-26777476 protein_coding
ENSMUST00000175842 (Smarca2-015) 26749726-26774305 protein_coding
ENSMUST00000175935 (Smarca2-004) 26681010-26751934 processed_transcript
ENSMUST00000175953 (Smarca2-017) 26750939-26770995 protein_coding
ENSMUST00000176019 (Smarca2-013) 26671098-26678577 retained_intron
ENSMUST00000176030 (Smarca2-003) 26605119-26778275 protein_coding
ENSMUST00000176475 (Smarca2-009) 26748459-26777370 protein_coding
ENSMUST00000176494 (Smarca2-008) 26721948-26751974 processed_transcript
ENSMUST00000176584 (Smarca2-012) 26623455-26631062 protein_coding
ENSMUST00000176698 (Smarca2-011) 26748423-26777370 protein_coding
ENSMUST00000176700 (Smarca2-019) 26716115-26771753 retained_intron
ENSMUST00000176731 (Smarca2-006) 26751947-26778321 nonsense_mediated_decay
ENSMUST00000176769 (Smarca2-005) 26619720-26777370 protein_coding
ENSMUST00000177116 (Smarca2-018) 26753600-26777651 protein_coding
ENSMUST00000177252 (Smarca2-016) 26748458-26776242 protein_coding
ENSMUST00000177484 (Smarca2-014) 26770491-26777432 protein_coding
ENSMUSG00000048138 (Dmrt2)
doublesex and mab-3 related transcription factor 2 		ENSMUST00000053068 (Dmrt2-201) 25672420-25679010 protein_coding
ENSMUSG00000093628 (Gm20616)
predicted gene 20616 		ENSMUST00000177262 (Gm20616-002) 26620822-26623419 processed_transcript
ENSMUST00000177453 (Gm20616-001) 26621033-26623410 processed_transcript
ENSMUSG00000098105 (Gm8825)
predicted gene 8825 		ENSMUST00000182565 (Gm8825-001) 25795810-25796807 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000643_0001ENSDARG00000008904ENSDART00000041412ENSDART00000113738ENSDART00000136002ENSDARG00000015072ENSDART00000010786CIL_000643_0002ENSG00000173253ENST00000259622ENST00000302441ENST00000358146ENST00000382251ENST00000382255ENST00000412350ENSG00000222973ENST00000411041ENSG00000224836ENST00000443334ENSG00000236199ENST00000426860CIL_000643_0003ENSMUSG00000024921ENSMUST00000025862ENSMUST00000099537ENSMUST00000112637ENSMUST00000175791ENSMUST00000175842ENSMUST00000175935ENSMUST00000175953ENSMUST00000176019ENSMUST00000176030ENSMUST00000176475ENSMUST00000176494ENSMUST00000176584ENSMUST00000176698ENSMUST00000176700ENSMUST00000176731ENSMUST00000176769ENSMUST00000177116ENSMUST00000177252ENSMUST00000177484ENSMUSG00000048138ENSMUST00000053068ENSMUSG00000093628ENSMUST00000177262ENSMUST00000177453ENSMUSG00000098105ENSMUST00000182565
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000643_0001ENSDARG00000008904ENSDART00000041412ENSDARG00000015072ENSDART00000010786CIL_000643_0002ENSG00000173253ENST00000259622ENST00000302441ENST00000358146ENST00000382251ENST00000382255ENST00000412350ENSG00000222973ENST00000411041ENSG00000224836ENST00000443334ENSG00000236199ENST00000426860CIL_000643_0003ENSMUSG00000024921ENSMUST00000025862ENSMUST00000099537ENSMUST00000175935ENSMUST00000176019ENSMUST00000176030ENSMUST00000176731ENSMUST00000176769ENSMUST00000177252ENSMUSG00000048138ENSMUST00000053068ENSMUSG00000093628ENSMUST00000177262ENSMUST00000177453ENSMUSG00000098105ENSMUST00000182565
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008904 ENSDART00000041412 N/A N/A N/A 5.020±4.44 N/A N/A 11.815±4.04 4.687±3.07 1.091±0.00 N/A 2.396±0.00 N/A N/A N/A
ENSDART00000113738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000015072 ENSDART00000010786 N/A N/A N/A 0.109±0.05 N/A N/A 0.101±0.04 0.146±0.06 0.018±0.00 N/A 0.899±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000173253 ENST00000259622 0.196±0.00 N/A N/A 0.147±0.07 0.145±0.01 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENST00000302441 N/A 0.086±0.00 N/A N/A N/A N/A 0.016±0.00 N/A N/A 0.096±0.00 0.055±0.00 0.084±0.00 N/A 0.338±0.00
ENST00000358146 0.841±0.00 N/A N/A 0.129±0.00 0.311±0.00 N/A N/A 6.442±0.00 N/A N/A N/A N/A N/A N/A
ENST00000382251 0.543±0.00 N/A N/A 0.424±0.00 0.699±0.00 0.239±0.00 N/A 3.214±0.00 0.156±0.00 0.729±0.00 0.266±0.00 0.028±0.00 N/A 0.084±0.00
ENST00000382255 N/A N/A N/A 0.056±0.00 N/A 0.098±0.00 N/A N/A N/A N/A 0.184±0.00 N/A N/A 0.330±0.00
ENST00000412350 0.869±0.00 N/A 3.510±0.00 0.553±0.33 N/A N/A 0.077±0.00 N/A N/A N/A 0.925±0.00 0.062±0.00 N/A N/A
ENSG00000222973 ENST00000411041 0.079±0.00 N/A N/A N/A N/A N/A 1.544±0.00 0.229±0.00 1.496±0.00 0.198±0.00 N/A N/A N/A 0.209±0.00
ENSG00000224836 ENST00000443334 N/A N/A N/A N/A N/A N/A 1.163±0.00 N/A N/A N/A N/A N/A N/A 0.111±0.00
ENSG00000236199 ENST00000426860 N/A 1.916±0.00 N/A N/A 1.041±0.00 0.321±0.00 0.799±0.00 0.367±0.00 0.178±0.00 1.405±0.00 N/A N/A 1.056±0.29 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024921 ENSMUST00000025862 7.565±2.55 N/A 7.599±0.93 16.903±11.72 4.383±0.17 N/A 3.604±0.48 2.928±1.08 1.746±1.28 12.346±4.78 3.468±0.93 10.903±6.09 6.271±5.45 15.269±3.65
ENSMUST00000099537 3.645±0.46 3.144±0.72 2.844±0.00 N/A 4.311±2.47 3.575±0.97 2.297±1.28 2.402±0.14 N/A 4.738±0.00 1.348±0.00 7.005±3.05 N/A N/A
ENSMUST00000112637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175935 N/A N/A N/A 65.012±0.00 N/A N/A N/A N/A N/A N/A N/A 67.421±0.00 N/A 82.180±0.00
ENSMUST00000175953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176019 N/A N/A N/A N/A 14.803±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176030 3.138±0.00 N/A 3.413±0.00 2.981±0.00 4.389±2.03 2.804±0.10 1.874±1.00 4.628±1.67 6.016±3.36 10.872±0.41 1.590±0.38 7.207±3.80 1.621±0.85 12.763±3.52
ENSMUST00000176475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176731 N/A N/A 22.214±1.56 26.390±2.73 6.576±0.00 N/A N/A 11.560±1.42 2.763±0.87 N/A 5.823±1.33 27.272±2.44 3.271±0.23 N/A
ENSMUST00000176769 N/A N/A N/A 46.186±0.00 N/A N/A N/A N/A N/A N/A N/A 34.781±0.00 7.261±1.13 73.615±0.00
ENSMUST00000177116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 101.982±0.00
ENSMUST00000177484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048138 ENSMUST00000053068 20.390±15.75 3.007±0.98 0.320±0.19 0.282±0.15 15.015±7.99 0.054±0.02 0.112±0.08 2.365±0.45 0.309±0.21 0.615±0.18 0.924±0.31 1.987±0.81 0.750±0.27 0.236±0.11
ENSMUSG00000093628 ENSMUST00000177262 0.164±0.00 0.193±0.02 0.091±0.00 0.044±0.01 0.295±0.12 0.230±0.07 N/A 0.098±0.03 0.046±0.00 0.339±0.00 N/A 0.073±0.00 0.071±0.06 7.769±0.53
ENSMUST00000177453 0.068±0.00 0.167±0.00 N/A N/A 0.076±0.00 N/A 0.064±0.00 N/A 0.130±0.10 0.103±0.05 N/A 0.194±0.15 N/A 2.161±0.06
ENSMUSG00000098105 ENSMUST00000182565 0.094±0.08 0.086±0.02 0.114±0.00 0.021±0.01 0.303±0.35 0.077±0.02 0.059±0.02 0.138±0.14 0.055±0.03 0.034±0.00 0.107±0.07 0.134±0.00 0.048±0.01 0.092±0.00

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