C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00065K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105048-ENSG00000129991 CGP 9606 19:55132794-55157773
GeneTranscriptPositionBiotype
ENSG00000105048 (TNNT1)
troponin T type 1 (skeletal, slow) 		ENST00000291901 (TNNT1-003) 55132794-55149206 protein_coding
ENST00000356783 (TNNT1-001) 55132794-55149206 protein_coding
ENST00000536926 (TNNT1-201) 55132832-55149206 protein_coding
ENST00000585321 (TNNT1-011) 55132865-55146942 protein_coding
ENST00000586282 (TNNT1-006) 55145400-55149206 retained_intron
ENST00000586649 (TNNT1-018) 55132950-55137177 protein_coding
ENST00000587089 (TNNT1-014) 55132876-55146454 nonsense_mediated_decay
ENST00000587465 (TNNT1-012) 55132835-55146949 protein_coding
ENST00000587758 (TNNT1-005) 55132794-55149193 protein_coding
ENST00000588147 (TNNT1-004) 55138018-55149206 protein_coding
ENST00000588426 (TNNT1-007) 55132794-55149206 protein_coding
ENST00000588981 (TNNT1-002) 55132794-55149354 protein_coding
ENST00000589226 (TNNT1-010) 55137976-55147308 protein_coding
ENST00000589745 (TNNT1-016) 55132828-55140922 protein_coding
ENST00000592920 (TNNT1-008) 55138005-55149206 processed_transcript
ENST00000593046 (TNNT1-009) 55137103-55147346 protein_coding
ENST00000593194 (TNNT1-015) 55132826-55141891 protein_coding
ENSG00000129991 (TNNI3)
troponin I type 3 (cardiac) 		ENST00000344887 (TNNI3-001) 55151770-55157732 protein_coding
ENST00000585806 (TNNI3-007) 55151767-55156481 retained_intron
ENST00000586446 (TNNI3-002) 55156729-55157732 retained_intron
ENST00000586669 (TNNI3-004) 55154110-55157282 processed_transcript
ENST00000586858 (TNNI3-005) 55156275-55156792 protein_coding
ENST00000587176 (TNNI3-009) 55154305-55157773 retained_intron
ENST00000588882 (TNNI3-006) 55151771-55156725 protein_coding
ENST00000589864 (TNNI3-008) 55151770-55154406 retained_intron
ENST00000590463 (TNNI3-003) 55154746-55157716 processed_transcript
ENSG00000267110 (CTD-2587H24.4)
 ENST00000587871 (CTD-2587H24.4-001) 55154757-55160671 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_00065K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000064179-ENSMUSG00000035458 CGP 10090 7:4504570-4524229
GeneTranscriptPositionBiotype
ENSMUSG00000035458 (Tnni3)
troponin I, cardiac 3 		ENSMUST00000098859 (Tnni3-001) 4518305-4522528 protein_coding
ENSMUST00000126873 (Tnni3-007) 4518308-4520567 retained_intron
ENSMUST00000127736 (Tnni3-005) 4521042-4521984 retained_intron
ENSMUST00000132621 (Tnni3-006) 4518305-4519764 retained_intron
ENSMUST00000140424 (Tnni3-002) 4520438-4522794 protein_coding
ENSMUST00000150166 (Tnni3-003) 4521341-4522492 retained_intron
ENSMUST00000151844 (Tnni3-004) 4521899-4522442 processed_transcript
ENSMUST00000154913 (Tnni3-008) 4520477-4524229 protein_coding
ENSMUSG00000055809 (Dnaaf3)
dynein, axonemal assembly factor 3 		ENSMUST00000094897 (Dnaaf3-001) 4522933-4532453 protein_coding
ENSMUSG00000064179 (Tnnt1)
troponin T1, skeletal, slow 		ENSMUST00000071798 (Tnnt1-001) 4504570-4515975 protein_coding
ENSMUST00000086502 (Tnnt1-012) 4504786-4508025 processed_transcript
ENSMUST00000108587 (Tnnt1-002) 4504570-4516004 protein_coding
ENSMUST00000163538 (Tnnt1-010) 4508578-4514574 protein_coding
ENSMUST00000163560 (Tnnt1-009) 4513829-4515107 protein_coding
ENSMUST00000163710 (Tnnt1-003) 4504663-4515959 protein_coding
ENSMUST00000163722 (Tnnt1-005) 4509610-4516382 protein_coding
ENSMUST00000166161 (Tnnt1-004) 4504755-4514368 protein_coding
ENSMUST00000166268 (Tnnt1-011) 4507568-4515961 protein_coding
ENSMUST00000166959 (Tnnt1-006) 4508510-4514615 protein_coding
ENSMUST00000168111 (Tnnt1-007) 4504784-4509938 retained_intron
ENSMUST00000169571 (Tnnt1-008) 4507600-4509798 retained_intron
ENSMUST00000178163 (Tnnt1-201) 4504663-4515975 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065K_0001ENSG00000105048ENST00000291901ENST00000356783ENST00000536926ENST00000585321ENST00000586282ENST00000586649ENST00000587089ENST00000587465ENST00000587758ENST00000588147ENST00000588426ENST00000588981ENST00000589226ENST00000589745ENST00000592920ENST00000593046ENST00000593194ENSG00000129991ENST00000344887ENST00000585806ENST00000586446ENST00000586669ENST00000586858ENST00000587176ENST00000588882ENST00000589864ENST00000590463ENSG00000267110ENST00000587871CIL_00065K_0002ENSMUSG00000035458ENSMUST00000098859ENSMUST00000126873ENSMUST00000127736ENSMUST00000132621ENSMUST00000140424ENSMUST00000150166ENSMUST00000151844ENSMUST00000154913ENSMUSG00000055809ENSMUST00000094897ENSMUSG00000064179ENSMUST00000071798ENSMUST00000086502ENSMUST00000108587ENSMUST00000163538ENSMUST00000163560ENSMUST00000163710ENSMUST00000163722ENSMUST00000166161ENSMUST00000166268ENSMUST00000166959ENSMUST00000168111ENSMUST00000169571ENSMUST00000178163
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00065K_0001ENSG00000105048ENST00000291901ENST00000356783ENST00000585321ENST00000586649ENST00000587089ENST00000587465ENST00000587758ENST00000588147ENST00000589226ENST00000589745ENST00000592920ENST00000593046ENST00000593194ENSG00000129991ENST00000344887ENST00000585806ENST00000586669ENST00000588882ENST00000589864ENST00000590463ENSG00000267110ENST00000587871CIL_00065K_0002ENSMUSG00000035458ENSMUST00000098859ENSMUST00000126873ENSMUST00000127736ENSMUST00000140424ENSMUST00000150166ENSMUST00000151844ENSMUST00000154913ENSMUSG00000055809ENSMUST00000094897ENSMUSG00000064179ENSMUST00000071798ENSMUST00000086502ENSMUST00000108587ENSMUST00000163538ENSMUST00000163560ENSMUST00000163710ENSMUST00000166161ENSMUST00000166268ENSMUST00000166959ENSMUST00000168111ENSMUST00000169571ENSMUST00000178163
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105048 ENST00000291901 N/A N/A N/A N/A 35.379±34.06 N/A 0.758±0.00 N/A 0.495±0.00 N/A 761.522±110.24 0.659±0.00 N/A 47.249±0.00
ENST00000356783 N/A N/A 0.154±0.00 N/A 31.420±0.00 0.471±0.00 N/A N/A N/A N/A 519.551±0.00 N/A N/A 49.350±0.00
ENST00000536926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585321 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.968±0.00 2.700±0.00 N/A
ENST00000586282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586649 0.375±0.00 N/A 0.538±0.00 N/A N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A N/A
ENST00000587089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.019±0.00
ENST00000587465 N/A 0.131±0.00 N/A N/A N/A 0.339±0.00 N/A N/A N/A N/A N/A 3.855±3.65 3.646±0.00 N/A
ENST00000587758 0.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588147 N/A N/A N/A N/A N/A 0.097±0.00 N/A 0.249±0.12 N/A N/A N/A N/A 15.290±0.00 6.466±0.00
ENST00000588426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589226 0.174±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.730±0.00 N/A N/A
ENST00000589745 N/A 0.697±0.00 N/A 7.946±5.16 N/A 0.381±0.00 N/A N/A 2.477±2.32 0.685±0.00 977.775±0.00 1.748±0.00 N/A N/A
ENST00000592920 N/A 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A N/A N/A N/A
ENST00000593046 N/A N/A N/A N/A 0.829±0.00 0.256±0.00 0.334±0.00 N/A 0.653±0.00 N/A N/A 0.621±0.00 7.122±0.00 N/A
ENST00000593194 N/A N/A N/A 1.656±0.00 93.775±0.00 0.344±0.00 N/A N/A N/A N/A 729.438±0.00 1.771±0.00 9.752±10.27 63.187±60.03
ENSG00000129991 ENST00000344887 N/A N/A N/A N/A N/A 0.219±0.00 1632.066±966.73 N/A N/A 0.485±0.00 N/A 3.221±0.00 10.778±13.43 N/A
ENST00000585806 N/A N/A N/A 0.658±0.00 0.173±0.00 N/A N/A N/A N/A N/A 3.237±0.00 N/A N/A N/A
ENST00000586446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586669 N/A N/A N/A N/A N/A N/A N/A N/A 0.169±0.00 N/A N/A 0.348±0.00 3.714±0.00 N/A
ENST00000586858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.600±0.00 N/A
ENST00000589864 N/A N/A N/A 0.649±0.00 N/A N/A N/A N/A 0.109±0.00 0.246±0.00 4.235±0.00 N/A N/A N/A
ENST00000590463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 2.838±0.00 N/A
ENSG00000267110 ENST00000587871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 53.682±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035458 ENSMUST00000098859 N/A 1.120±0.20 N/A N/A N/A N/A 1673.690±236.45 0.718±0.25 0.161±0.03 30.812±4.98 0.283±0.18 36.165±51.00 0.868±0.17 32.815±0.00
ENSMUST00000126873 N/A N/A N/A 1.041±0.00 N/A N/A N/A N/A N/A N/A 0.374±0.16 54.662±6.87 0.798±0.27 N/A
ENSMUST00000127736 N/A N/A N/A N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A N/A
ENSMUST00000132621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140424 N/A 1.854±0.05 N/A N/A N/A N/A N/A 1.069±0.00 0.414±0.09 125.320±50.19 N/A 86.361±18.12 0.832±0.00 N/A
ENSMUST00000150166 N/A 1.475±0.07 N/A N/A N/A 1.048±0.00 N/A N/A N/A N/A N/A 17.432±2.58 0.454±0.00 N/A
ENSMUST00000151844 N/A N/A N/A N/A N/A N/A N/A N/A 0.727±0.41 N/A 0.318±0.04 108.670±18.93 N/A N/A
ENSMUST00000154913 N/A N/A N/A N/A N/A N/A 4435.370±1718.43 0.851±0.27 N/A 92.623±17.88 0.145±0.00 20.797±4.21 N/A N/A
ENSMUSG00000055809 ENSMUST00000094897 1.832±0.16 1.048±0.25 N/A 0.925±0.59 4.670±0.95 1.219±0.12 N/A 0.479±0.16 0.166±0.08 7.882±0.65 0.131±0.06 6.663±0.97 0.659±0.36 55.560±24.25
ENSMUSG00000064179 ENSMUST00000071798 N/A N/A N/A 0.406±0.00 N/A N/A 1.239±0.41 0.914±0.11 3.182±0.00 0.118±0.05 107.393±67.91 0.590±0.38 N/A N/A
ENSMUST00000086502 0.136±0.04 0.618±0.25 N/A 0.615±0.00 0.317±0.11 0.607±0.30 N/A 0.146±0.07 0.361±0.27 0.885±0.69 N/A 2.688±1.64 0.563±0.00 0.234±0.15
ENSMUST00000108587 N/A N/A 0.461±0.00 0.309±0.08 0.152±0.00 N/A 1.114±0.02 0.754±0.07 2.003±0.00 0.075±0.00 67.430±46.59 1.146±0.81 N/A 0.148±0.00
ENSMUST00000163538 0.119±0.01 0.313±0.21 0.579±0.00 37.323±0.00 0.248±0.18 0.245±0.05 1.014±0.04 0.827±0.00 N/A 0.386±0.00 N/A 1.987±3.07 N/A 0.148±0.00
ENSMUST00000163560 1.370±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163710 N/A N/A 1.016±0.25 3.713±4.80 0.430±0.25 0.320±0.00 N/A N/A 0.604±0.44 N/A 30.284±16.30 3.325±2.13 2.496±1.56 0.261±0.06
ENSMUST00000163722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166161 N/A N/A 0.819±0.07 21.907±0.00 0.384±0.16 0.627±0.00 N/A 0.867±0.00 0.587±0.38 0.219±0.00 24.459±17.11 N/A 11.370±15.73 N/A
ENSMUST00000166268 N/A N/A N/A 0.375±0.00 N/A 0.216±0.00 N/A 0.326±0.11 1.344±1.13 N/A N/A 1.632±1.31 N/A N/A
ENSMUST00000166959 0.971±0.00 N/A 1.174±0.00 0.273±0.00 N/A N/A 2.125±0.42 0.311±0.21 N/A 0.322±0.05 N/A 0.334±0.07 N/A 0.284±0.12
ENSMUST00000168111 N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A 0.067±0.00 N/A N/A 0.372±0.00 0.382±0.00 N/A
ENSMUST00000169571 0.132±0.00 0.568±0.00 N/A N/A N/A 0.404±0.18 N/A 0.325±0.26 1.362±0.61 N/A N/A 0.812±0.00 5.175±4.94 N/A
ENSMUST00000178163 N/A N/A N/A N/A N/A N/A N/A N/A 0.653±0.00 N/A N/A N/A N/A N/A

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