C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00067J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107438-ENSG00000095637 CGP 9606 10:95237572-95561414
GeneTranscriptPositionBiotype
ENSG00000107438 (PDLIM1)
PDZ and LIM domain 1
ENST00000329399 (PDLIM1-001) 95237572-95291024 protein_coding
ENST00000477757 (PDLIM1-002) 95238010-95291012 processed_transcript
ENST00000490391 (PDLIM1-005) 95238634-95247620 processed_transcript
ENST00000492511 (PDLIM1-004) 95237940-95238848 processed_transcript
ENST00000493949 (PDLIM1-003) 95263876-95273406 processed_transcript
CIL_00067J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055044-ENSMUSG00000025006 CGP 10090 19:40221173-40402267
GeneTranscriptPositionBiotype
ENSMUSG00000025006 (Sorbs1)
sorbin and SH3 domain containing 1
ENSMUST00000099466 (Sorbs1-201) 40295049-40402267 protein_coding
ENSMUST00000099467 (Sorbs1-202) 40295049-40402267 protein_coding
ENSMUST00000165212 (Sorbs1-203) 40295049-40402267 protein_coding
ENSMUST00000165469 (Sorbs1-204) 40295049-40402267 protein_coding
ENSMUSG00000055044 (Pdlim1)
PDZ and LIM domain 1 (elfin)
ENSMUST00000068439 (Pdlim1-001) 40221173-40271616 protein_coding
ENSMUST00000182432 (Pdlim1-003) 40230592-40271842 protein_coding
ENSMUST00000182540 (Pdlim1-005) 40222363-40223356 retained_intron
ENSMUST00000182636 (Pdlim1-002) 40247292-40271616 retained_intron
ENSMUST00000182813 (Pdlim1-004) 40222523-40230805 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00067J_0001ENSG00000107438ENST00000329399ENST00000477757ENST00000490391ENST00000492511ENST00000493949CIL_00067J_0002ENSMUSG00000025006ENSMUST00000099466ENSMUST00000099467ENSMUST00000165212ENSMUST00000165469ENSMUSG00000055044ENSMUST00000068439ENSMUST00000182432ENSMUST00000182540ENSMUST00000182636ENSMUST00000182813
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00067J_0001ENSG00000107438ENST00000329399ENST00000492511ENST00000493949CIL_00067J_0002ENSMUSG00000025006ENSMUST00000099466ENSMUST00000099467ENSMUST00000165469ENSMUSG00000055044ENSMUST00000068439ENSMUST00000182432ENSMUST00000182540ENSMUST00000182813
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107438 ENST00000329399 165.486±0.00 260.731±0.00 1.179±0.00 5.589±5.33 50.970±38.88 69.228±56.13 72.188±68.78 25.145±17.46 47.366±0.00 260.918±254.07 90.945±69.69 65.994±51.14 182.642±13.74 28.517±19.90
ENST00000477757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492511 N/A N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 230.455±0.00 11.898±0.00
ENST00000493949 N/A N/A 0.644±0.00 0.223±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025006 ENSMUST00000099466 N/A N/A 78.212±0.00 17.600±0.00 N/A N/A N/A N/A N/A 2.685±0.00 N/A 17.900±20.78 16.198±9.36 0.972±0.00
ENSMUST00000099467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.120±0.00 N/A
ENSMUST00000165212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.091±0.00 0.828±0.00 0.640±0.00
ENSMUSG00000055044 ENSMUST00000068439 7.184±2.02 2.176±0.58 3.458±0.23 0.411±0.22 9.571±3.12 22.853±3.76 5.120±2.02 1.802±0.64 4.415±1.31 12.787±1.12 1.906±0.76 11.576±2.28 23.730±3.79 0.645±0.23
ENSMUST00000182432 27.875±0.00 2.299±0.35 N/A 7.029±0.00 7.436±0.00 88.809±0.00 N/A 2.421±0.37 8.591±0.00 N/A 5.965±1.54 26.894±12.12 224.568±97.73 1.727±0.57
ENSMUST00000182540 18.830±0.85 2.565±0.03 N/A 2.571±0.00 11.840±3.70 83.232±21.21 7.875±1.12 4.067±1.65 10.141±0.95 27.525±5.36 N/A 29.371±13.01 92.247±16.64 2.197±0.62
ENSMUST00000182636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182813 N/A N/A N/A 1.944±0.00 N/A N/A N/A N/A N/A N/A N/A 14.325±5.45 110.809±45.39 0.645±0.00

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