C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00067L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108231-ENSG00000176273 CGP 9606 10:93757885-93956062
GeneTranscriptPositionBiotype
ENSG00000108231 (LGI1)
leucine-rich, glioma inactivated 1 		ENST00000371413 (LGI1-002) 93757921-93798157 protein_coding
ENST00000371418 (LGI1-001) 93757885-93798159 protein_coding
ENST00000464250 (LGI1-004) 93777557-93778987 processed_transcript
ENST00000478763 (LGI1-003) 93757921-93758912 processed_transcript
ENST00000485458 (LGI1-005) 93777177-93777618 processed_transcript
ENSG00000176273 (SLC35G1)
solute carrier family 35, member G1 		ENST00000371408 (SLC35G1-001) 93893973-93903824 protein_coding
ENST00000427197 (SLC35G1-201) 93893973-93902733 protein_coding
ENST00000483386 (SLC35G1-002) 93893991-93909830 nonsense_mediated_decay
ENST00000494992 (SLC35G1-003) 93894002-93956062 nonsense_mediated_decay
ENST00000603665 (SLC35G1-004) 93894022-93909825 nonsense_mediated_decay
ENST00000605679 (SLC35G1-005) 93894001-93954256 nonsense_mediated_decay
CIL_00067L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067242-ENSMUSG00000044026 CGP 10090 19:38264782-38405607
GeneTranscriptPositionBiotype
ENSMUSG00000044026 (Slc35g1)
solute carrier family 35, member G1 		ENSMUST00000054098 (Slc35g1-201) 38395980-38405607 protein_coding
ENSMUSG00000067242 (Lgi1)
leucine-rich repeat LGI family, member 1 		ENSMUST00000087252 (Lgi1-001) 38264782-38308939 protein_coding
ENSMUST00000130039 (Lgi1-003) 38265410-38301269 protein_coding
ENSMUST00000134832 (Lgi1-002) 38264782-38269046 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00067L_0001ENSG00000108231ENST00000371413ENST00000371418ENST00000464250ENST00000478763ENST00000485458ENSG00000176273ENST00000371408ENST00000427197ENST00000483386ENST00000494992ENST00000603665ENST00000605679CIL_00067L_0002ENSMUSG00000044026ENSMUST00000054098ENSMUSG00000067242ENSMUST00000087252ENSMUST00000130039ENSMUST00000134832
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00067L_0001ENSG00000108231ENST00000371413ENST00000371418ENST00000478763ENSG00000176273ENST00000371408ENST00000427197ENST00000483386ENST00000603665CIL_00067L_0002ENSMUSG00000044026ENSMUST00000054098ENSMUSG00000067242ENSMUST00000087252ENSMUST00000130039ENSMUST00000134832
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108231 ENST00000371413 N/A 0.114±0.00 N/A 5.163±0.82 0.081±0.04 0.098±0.00 N/A N/A N/A 0.400±0.00 0.170±0.00 0.057±0.00 0.025±0.00 0.115±0.00
ENST00000371418 0.084±0.00 0.081±0.00 N/A 6.371±1.49 0.157±0.00 0.943±0.85 0.033±0.00 0.058±0.00 0.167±0.10 N/A 0.206±0.00 0.017±0.00 N/A 0.407±0.29
ENST00000464250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478763 N/A N/A N/A N/A 0.077±0.00 0.563±0.00 0.057±0.00 N/A 0.092±0.00 N/A 0.603±0.30 N/A N/A N/A
ENST00000485458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000176273 ENST00000371408 0.142±0.00 N/A N/A 0.099±0.00 0.369±0.00 0.500±0.41 0.078±0.00 0.238±0.00 0.094±0.04 0.079±0.05 0.136±0.00 0.474±0.00 0.161±0.04 N/A
ENST00000427197 0.296±0.00 0.218±0.00 0.210±0.00 N/A 0.645±0.04 1.276±1.10 0.177±0.01 0.493±0.00 0.307±0.16 0.184±0.00 N/A 0.760±0.66 0.216±0.13 1.838±0.40
ENST00000483386 0.107±0.00 0.308±0.00 0.113±0.00 0.589±0.00 0.596±0.13 0.589±0.00 0.086±0.00 N/A 0.131±0.07 0.286±0.00 0.058±0.00 0.424±0.19 0.159±0.10 1.009±0.52
ENST00000494992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603665 0.310±0.00 0.191±0.00 0.136±0.00 N/A 0.459±0.00 N/A N/A 0.383±0.00 0.039±0.00 0.204±0.08 N/A 0.608±0.00 0.163±0.07 N/A
ENST00000605679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000044026 ENSMUST00000054098 2.148±1.05 4.607±1.13 17.866±6.06 0.178±0.06 1.644±1.24 19.299±2.98 0.417±0.05 2.677±0.23 2.465±0.42 1.313±0.10 0.558±0.13 2.047±1.69 2.784±1.40 0.725±0.27
ENSMUSG00000067242 ENSMUST00000087252 0.356±0.06 0.177±0.08 0.470±0.02 5.235±3.00 0.074±0.04 0.102±0.04 1.336±0.39 0.056±0.02 0.025±0.03 0.132±0.07 1.009±0.55 0.204±0.11 0.014±0.01 0.067±0.03
ENSMUST00000130039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A
ENSMUST00000134832 N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A 0.094±0.03 0.005±0.00 0.093±0.04

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