C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000683_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000237289-ENSG00000242866 CGP 9606 15:43593054-43618800
GeneTranscriptPositionBiotype
ENSG00000222398 (RNU6-554P)
RNA, U6 small nuclear 554, pseudogene 		ENST00000410466 (RNU6-554P-201) 43602543-43602648 snRNA
ENSG00000242866 (STRC)
stereocilin 		ENST00000428650 (STRC-011) 43599633-43618798 nonsense_mediated_decay
ENST00000432436 (STRC-005) 43615127-43618240 protein_coding
ENST00000440125 (STRC-012) 43599633-43618798 nonsense_mediated_decay
ENST00000448437 (STRC-003) 43599602-43613187 retained_intron
ENST00000450892 (STRC-001) 43599398-43618800 protein_coding
ENST00000455136 (STRC-006) 43604704-43613235 nonsense_mediated_decay
ENST00000460952 (STRC-007) 43600563-43601675 retained_intron
ENST00000470279 (STRC-009) 43611199-43613020 retained_intron
ENST00000471703 (STRC-002) 43599590-43613105 retained_intron
ENST00000483250 (STRC-008) 43611194-43613025 retained_intron
ENST00000485556 (STRC-004) 43599602-43613214 retained_intron
ENST00000493750 (STRC-010) 43600999-43603582 retained_intron
ENST00000541030 (STRC-201) 43599563-43618800 protein_coding
CIL_000683_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000308-ENSMUSG00000033498 CGP 10090 2:121357714-121387168
GeneTranscriptPositionBiotype
ENSMUSG00000000308 (Ckmt1)
creatine kinase, mitochondrial 1, ubiquitous 		ENSMUST00000000317 (Ckmt1-002) 121358610-121363737 protein_coding
ENSMUST00000078222 (Ckmt1-001) 121357776-121363737 protein_coding
ENSMUST00000125221 (Ckmt1-007) 121357840-121359777 protein_coding
ENSMUST00000125812 (Ckmt1-010) 121357714-121360040 protein_coding
ENSMUST00000126130 (Ckmt1-005) 121358656-121360985 nonsense_mediated_decay
ENSMUST00000128612 (Ckmt1-008) 121358844-121360019 nonsense_mediated_decay
ENSMUST00000129130 (Ckmt1-009) 121358666-121360627 protein_coding
ENSMUST00000145380 (Ckmt1-003) 121358659-121360361 retained_intron
ENSMUST00000150271 (Ckmt1-004) 121357907-121360988 protein_coding
ENSMUST00000153040 (Ckmt1-006) 121362918-121363736 retained_intron
ENSMUSG00000033498 (Strc)
stereocilin 		ENSMUST00000038389 (Strc-001) 121363728-121380940 protein_coding
ENSMUST00000129136 (Strc-004) 121368403-121375031 nonsense_mediated_decay
ENSMUST00000134443 (Strc-003) 121372886-121375015 processed_transcript
ENSMUST00000149219 (Strc-002) 121376344-121387168 retained_intron
ENSMUST00000150332 (Strc-005) 121372965-121374789 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000683_0001ENSG00000222398ENST00000410466ENSG00000242866ENST00000428650ENST00000432436ENST00000440125ENST00000448437ENST00000450892ENST00000455136ENST00000460952ENST00000470279ENST00000471703ENST00000483250ENST00000485556ENST00000493750ENST00000541030CIL_000683_0002ENSMUSG00000000308ENSMUST00000000317ENSMUST00000078222ENSMUST00000125221ENSMUST00000125812ENSMUST00000126130ENSMUST00000128612ENSMUST00000129130ENSMUST00000145380ENSMUST00000150271ENSMUST00000153040ENSMUSG00000033498ENSMUST00000038389ENSMUST00000129136ENSMUST00000134443ENSMUST00000149219ENSMUST00000150332
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000683_0001ENSG00000222398ENST00000410466ENSG00000242866ENST00000428650ENST00000432436ENST00000440125ENST00000448437ENST00000460952ENST00000471703ENST00000485556ENST00000493750ENST00000541030CIL_000683_0002ENSMUSG00000000308ENSMUST00000000317ENSMUST00000078222ENSMUST00000125221ENSMUST00000125812ENSMUST00000126130ENSMUST00000129130ENSMUST00000145380ENSMUST00000150271ENSMUST00000153040ENSMUSG00000033498ENSMUST00000038389ENSMUST00000129136ENSMUST00000149219
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000222398 ENST00000410466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.667±0.00
ENSG00000242866 ENST00000428650 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A
ENST00000432436 N/A N/A N/A N/A N/A N/A N/A 0.199±0.00 N/A N/A N/A 0.120±0.00 N/A N/A
ENST00000440125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.353±0.00
ENST00000448437 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A 0.105±0.00
ENST00000450892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.932±0.00
ENST00000470279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.373±0.28
ENST00000483250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485556 0.009±0.00 0.225±0.00 N/A N/A N/A N/A 0.036±0.00 0.076±0.00 0.015±0.00 0.036±0.00 N/A 0.012±0.00 N/A 0.429±0.33
ENST00000493750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.041±0.00
ENST00000541030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000308 ENSMUST00000000317 3.940±0.36 2.125±0.70 N/A 60.769±64.77 2.136±0.98 202.639±13.32 0.767±0.00 N/A 0.130±0.06 3.162±1.06 N/A 2.606±0.67 1.011±0.66 0.156±0.08
ENSMUST00000078222 2.631±1.71 N/A 27.389±2.91 N/A 1.198±0.23 784.611±67.77 1.100±0.46 47.934±1.76 0.306±0.29 14.273±0.75 0.104±0.00 3.981±1.66 0.556±0.29 0.256±0.17
ENSMUST00000125221 N/A 5.606±0.73 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125812 0.116±0.00 1.374±0.47 N/A N/A 1.154±0.00 250.372±8.59 0.830±0.17 N/A 0.113±0.09 N/A N/A 3.369±0.00 N/A N/A
ENSMUST00000126130 N/A 1.278±0.22 N/A N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A 1.725±0.00 N/A
ENSMUST00000128612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129130 N/A N/A N/A 308.807±0.00 N/A N/A N/A N/A N/A N/A N/A 3.368±0.00 1.647±0.43 N/A
ENSMUST00000145380 N/A 1.962±0.17 N/A N/A 2.256±0.35 480.580±176.44 N/A N/A 0.190±0.00 4.757±0.00 N/A 4.056±0.84 N/A 0.169±0.00
ENSMUST00000150271 2.753±0.00 N/A N/A 107.561±0.00 1.581±0.00 387.254±12.52 0.730±0.14 N/A 0.156±0.10 7.205±1.32 0.149±0.00 2.953±1.37 1.546±0.00 N/A
ENSMUST00000153040 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A 0.222±0.00 N/A 0.217±0.06 3.354±0.74 1.696±0.10 N/A
ENSMUSG00000033498 ENSMUST00000038389 0.044±0.02 N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A 0.025±0.01 0.357±0.08 0.037±0.00 0.035±0.00
ENSMUST00000129136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A
ENSMUST00000134443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.096±0.04
ENSMUST00000150332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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