C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006AA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000244462-ENSG00000244005 CGP 9606 20:35648925-35699359
GeneTranscriptPositionBiotype
ENSG00000244462 (RBM12)
RNA binding motif protein 12 		ENST00000359646 (RBM12-003) 35650142-35664888 protein_coding
ENST00000374104 (RBM12-002) 35650326-35664900 protein_coding
ENST00000374114 (RBM12-001) 35648925-35664916 protein_coding
ENST00000424458 (RBM12-004) 35654450-35664889 protein_coding
ENST00000431148 (RBM12-005) 35654893-35664956 protein_coding
ENST00000435161 (RBM12-006) 35654921-35664934 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0006AA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000089824-ENSMUSG00000027618 CGP 10090 2:156091958-156144186
GeneTranscriptPositionBiotype
ENSMUSG00000027618 (Nfs1)
nitrogen fixation gene 1 (S. cerevisiae) 		ENSMUST00000029147 (Nfs1-001) 156123639-156144186 protein_coding
ENSMUST00000109600 (Nfs1-002) 156141787-156144180 protein_coding
ENSMUST00000125449 (Nfs1-003) 156138507-156144153 retained_intron
ENSMUST00000184469 (Nfs1-007) 156123650-156139809 protein_coding
ENSMUSG00000067847 (Romo1)
reactive oxygen species modulator 1 		ENSMUST00000088610 (Romo1-001) 156144039-156145797 protein_coding
ENSMUST00000109597 (Romo1-003) 156144233-156145794 protein_coding
ENSMUST00000109598 (Romo1-002) 156144237-156145783 protein_coding
ENSMUST00000119950 (Romo1-004) 156144240-156145794 protein_coding
ENSMUSG00000089824 (Rbm12)
RNA binding motif protein 12 		ENSMUST00000059647 (Rbm12-001) 156091958-156111956 protein_coding
ENSMUST00000109604 (Rbm12-002) 156091958-156111956 protein_coding
ENSMUST00000128499 (Rbm12-005) 156097921-156111978 protein_coding
ENSMUST00000131377 (Rbm12-004) 156097485-156111916 protein_coding
ENSMUST00000138068 (Rbm12-006) 156097950-156111961 protein_coding
ENSMUSG00000098950 (Gm28036)
predicted gene, 28036 		ENSMUST00000127956 (Gm28036-002) 156071845-156098085 nonsense_mediated_decay
ENSMUST00000132494 (Gm28036-001) 156071845-156111901 nonsense_mediated_decay
ENSMUST00000159952 (Gm28036-008) 156078929-156127092 nonsense_mediated_decay
ENSMUST00000160165 (Gm28036-007) 156078929-156127092 nonsense_mediated_decay
ENSMUST00000162612 (Gm28036-006) 156078929-156127092 nonsense_mediated_decay
ENSMUST00000183518 (Gm28036-003) 156079424-156111931 protein_coding
ENSMUST00000183972 (Gm28036-005) 156079097-156096928 nonsense_mediated_decay
ENSMUST00000184899 (Gm28036-004) 156079091-156111926 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AA_0001ENSG00000244462ENST00000359646ENST00000374104ENST00000374114ENST00000424458ENST00000431148ENST00000435161CIL_0006AA_0002ENSMUSG00000027618ENSMUST00000029147ENSMUST00000109600ENSMUST00000125449ENSMUST00000184469ENSMUSG00000067847ENSMUST00000088610ENSMUST00000109597ENSMUST00000109598ENSMUST00000119950ENSMUSG00000089824ENSMUST00000059647ENSMUST00000109604ENSMUST00000128499ENSMUST00000131377ENSMUST00000138068ENSMUSG00000098950ENSMUST00000127956ENSMUST00000132494ENSMUST00000159952ENSMUST00000160165ENSMUST00000162612ENSMUST00000183518ENSMUST00000183972ENSMUST00000184899
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AA_0001ENSG00000244462ENST00000359646ENST00000374104ENST00000374114ENST00000424458CIL_0006AA_0002ENSMUSG00000027618ENSMUST00000029147ENSMUST00000109600ENSMUSG00000067847ENSMUST00000088610ENSMUST00000109597ENSMUSG00000089824ENSMUST00000059647ENSMUST00000109604ENSMUSG00000098950ENSMUST00000127956
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000244462 ENST00000359646 N/A N/A 1.855±0.00 N/A 4.497±0.00 N/A N/A 1.804±0.00 N/A 4.991±0.00 N/A 14.697±10.62 11.841±0.00 10.923±0.00
ENST00000374104 7.623±0.00 13.510±0.00 N/A 3.877±1.31 8.244±0.00 4.455±1.86 4.182±1.38 7.470±0.00 3.573±1.02 7.564±0.00 3.321±0.31 11.582±0.22 11.433±1.72 7.894±0.00
ENST00000374114 4.820±0.00 8.618±0.00 1.658±0.00 3.605±1.40 4.449±0.88 4.426±1.37 2.274±0.66 5.461±0.00 2.529±1.07 3.905±0.18 N/A 6.781±1.85 N/A 4.873±0.58
ENST00000424458 N/A N/A 9.944±0.00 12.478±0.00 18.809±0.00 16.919±0.00 10.925±0.00 N/A 21.437±0.00 15.502±0.00 7.166±0.00 N/A N/A N/A
ENST00000431148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027618 ENSMUST00000029147 38.457±5.08 42.764±1.48 25.462±4.19 19.335±5.64 36.478±3.50 26.417±1.05 47.340±1.67 60.465±4.03 38.458±8.42 26.873±0.56 49.159±1.46 35.248±4.70 26.734±5.36 23.097±6.17
ENSMUST00000109600 N/A 145.816±55.75 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067847 ENSMUST00000088610 157.859±20.81 125.120±8.66 161.809±24.35 160.355±49.35 139.596±3.18 93.634±9.89 174.689±13.13 212.364±36.10 143.401±52.88 112.507±6.74 142.977±12.40 132.312±41.95 146.085±10.83 70.129±15.63
ENSMUST00000109597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.620±0.00 N/A N/A
ENSMUST00000109598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089824 ENSMUST00000059647 N/A N/A N/A 8.401±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.181±0.00 N/A
ENSMUST00000109604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.081±0.59 2.748±0.00 0.939±0.00
ENSMUST00000128499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098950 ENSMUST00000127956 N/A N/A N/A 2.901±0.00 N/A N/A N/A N/A N/A N/A N/A 9.269±1.38 8.996±3.17 3.178±1.16
ENSMUST00000132494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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