Institute of Cardiovascular Regeneration Webtool Repository

Region Summary

Source ID	Type	Tax ID	Position
ENSDARG00000030585-ENSDARG00000037084	CGP	7955	7:69521681-69648797
Gene	Transcript	Position	Biotype
ENSDARG00000030585 (rpl13) ribosomal protein L13	ENSDART00000047391 (rpl13-001)	69521681-69531116	protein_coding
	ENSDART00000149628 (rpl13-002)	69521721-69527575	protein_coding
	ENSDART00000149670 (rpl13-003)	69522965-69527576	retained_intron
ENSDARG00000037084 (CPNE7) copine VII	ENSDART00000091052 (CPNE7-201)	69548086-69648039	protein_coding
ENSDARG00000037084 (CPNE7) copine VII	ENSDART00000155249 (CPNE7-001)	69540786-69648797	protein_coding
ENSDARG00000084186 (snoMBII-202) Small nucleolar RNA MBII-202	ENSDART00000119586 (snoMBII-202.2-201)	69525336-69525417	snoRNA
ENSDARG00000085320 (snoMBII-202) Small nucleolar RNA MBII-202	ENSDART00000120720 (snoMBII-202.3-201)	69530134-69530210	snoRNA

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CIL_0006AP_0002 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0006AP_0002 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000030585' => 'ribosomal protein L13',
		'ENSDARG00000037084' => 'copine VII',
		'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
		'ENSG00000167526' => 'ribosomal protein L13',
		'ENSG00000178773' => 'copine VII',
		'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000000740' => 'ribosomal protein L13',
		'ENSMUSG00000034796' => 'copine VII',
		'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000098550' => 'microRNA 7079',
		'ENSMUSG00000098582' => 'microRNA 7080'
	),
	'gene_name_arr' => array(
		'ENSDARG00000030585' => 'rpl13',
		'ENSDARG00000037084' => 'CPNE7',
		'ENSDARG00000080268' => 'snoMBII-202',
		'ENSDARG00000084186' => 'snoMBII-202',
		'ENSDARG00000085320' => 'snoMBII-202',
		'ENSG00000167526' => 'RPL13',
		'ENSG00000178773' => 'CPNE7',
		'ENSG00000200084' => 'SNORD68',
		'ENSMUSG00000000740' => 'Rpl13',
		'ENSMUSG00000034796' => 'Cpne7',
		'ENSMUSG00000064450' => 'Snord68',
		'ENSMUSG00000098550' => 'Mir7079',
		'ENSMUSG00000098582' => 'Mir7080'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 12 => 'Bladder',
		(int) 14 => 'Brain',
		(int) 21 => 'Breast',
		(int) 30 => 'Colon',
		(int) 34 => 'Heart',
		(int) 42 => 'Kidney',
		(int) 51 => 'Liver',
		(int) 59 => 'Lung',
		(int) 63 => 'Muscle',
		(int) 69 => 'Ovary',
		(int) 81 => 'Placenta',
		(int) 89 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 45,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000047391' => array(
			'start' => '69521681',
			'end' => '69531116',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-001'
		),
		'ENSDART00000149628' => array(
			'start' => '69521721',
			'end' => '69527575',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-002'
		),
		'ENSDART00000149670' => array(
			'start' => '69522965',
			'end' => '69527576',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'rpl13-003'
		),
		'ENSDART00000091052' => array(
			'start' => '69548086',
			'end' => '69648039',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-201'
		),
		'ENSDART00000155249' => array(
			'start' => '69540786',
			'end' => '69648797',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENSDART00000118328' => array(
			'start' => '69527371',
			'end' => '69527453',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.1-201'
		),
		'ENSDART00000119586' => array(
			'start' => '69525336',
			'end' => '69525417',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.2-201'
		),
		'ENSDART00000120720' => array(
			'start' => '69530134',
			'end' => '69530210',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.3-201'
		),
		'ENST00000311528' => array(
			'start' => '89560657',
			'end' => '89566828',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-001'
		),
		'ENST00000393099' => array(
			'start' => '89560711',
			'end' => '89564542',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-002'
		),
		'ENST00000399461' => array(
			'start' => '89560904',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-003'
		),
		'ENST00000452368' => array(
			'start' => '89560683',
			'end' => '89563952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-015'
		),
		'ENST00000467736' => array(
			'start' => '89560711',
			'end' => '89561710',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-006'
		),
		'ENST00000472354' => array(
			'start' => '89562370',
			'end' => '89563438',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-008'
		),
		'ENST00000484610' => array(
			'start' => '89560679',
			'end' => '89563067',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-004'
		),
		'ENST00000487034' => array(
			'start' => '89560682',
			'end' => '89561523',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-007'
		),
		'ENST00000491523' => array(
			'start' => '89560677',
			'end' => '89562393',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-005'
		),
		'ENST00000562879' => array(
			'start' => '89560682',
			'end' => '89563473',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RPL13-011'
		),
		'ENST00000563270' => array(
			'start' => '89560681',
			'end' => '89563032',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-016'
		),
		'ENST00000563749' => array(
			'start' => '89560677',
			'end' => '89563043',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-010'
		),
		'ENST00000565571' => array(
			'start' => '89560683',
			'end' => '89561849',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-018'
		),
		'ENST00000567815' => array(
			'start' => '89560681',
			'end' => '89563080',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-009'
		),
		'ENST00000570149' => array(
			'start' => '89562140',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-017'
		),
		'ENST00000268720' => array(
			'start' => '89575768',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-002'
		),
		'ENST00000319518' => array(
			'start' => '89575791',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENST00000525982' => array(
			'start' => '89575782',
			'end' => '89583714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-003'
		),
		'ENST00000526232' => array(
			'start' => '89595576',
			'end' => '89596849',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-006'
		),
		'ENST00000529800' => array(
			'start' => '89587043',
			'end' => '89595423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-004'
		),
		'ENST00000532500' => array(
			'start' => '89584821',
			'end' => '89587732',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CPNE7-005'
		),
		'ENST00000564421' => array(
			'start' => '89595770',
			'end' => '89596845',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-009'
		),
		'ENST00000566398' => array(
			'start' => '89594100',
			'end' => '89596859',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-008'
		),
		'ENST00000568977' => array(
			'start' => '89588804',
			'end' => '89596816',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-010'
		),
		'ENST00000363214' => array(
			'start' => '89561434',
			'end' => '89561517',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'SNORD68-201'
		),
		'ENSMUST00000000756' => array(
			'start' => '123102350',
			'end' => '123105244',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rpl13-001'
		),
		'ENSMUST00000129311' => array(
			'start' => '123102653',
			'end' => '123105244',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-002'
		),
		'ENSMUST00000132275' => array(
			'start' => '123102653',
			'end' => '123104464',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-004'
		),
		'ENSMUST00000152444' => array(
			'start' => '123102651',
			'end' => '123103641',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-003'
		),
		'ENSMUST00000037900' => array(
			'start' => '123117378',
			'end' => '123135182',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Cpne7-001'
		),
		'ENSMUST00000123191' => array(
			'start' => '123126517',
			'end' => '123127373',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Cpne7-005'
		),
		'ENSMUST00000127431' => array(
			'start' => '123128623',
			'end' => '123131892',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-004'
		),
		'ENSMUST00000131659' => array(
			'start' => '123117447',
			'end' => '123135182',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-002'
		),
		'ENSMUST00000134235' => array(
			'start' => '123117374',
			'end' => '123135180',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-003'
		),
		'ENSMUST00000082516' => array(
			'start' => '123103038',
			'end' => '123103123',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'Snord68-201'
		),
		'ENSMUST00000184697' => array(
			'start' => '123104975',
			'end' => '123105043',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7079-201'
		),
		'ENSMUST00000184815' => array(
			'start' => '123130106',
			'end' => '123130172',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7080-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000030585' => 'ribosomal protein L13',
	'ENSDARG00000037084' => 'copine VII',
	'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
	'ENSG00000167526' => 'ribosomal protein L13',
	'ENSG00000178773' => 'copine VII',
	'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000000740' => 'ribosomal protein L13',
	'ENSMUSG00000034796' => 'copine VII',
	'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000098550' => 'microRNA 7079',
	'ENSMUSG00000098582' => 'microRNA 7080'
)
$gene_name_arr = array(
	'ENSDARG00000030585' => 'rpl13',
	'ENSDARG00000037084' => 'CPNE7',
	'ENSDARG00000080268' => 'snoMBII-202',
	'ENSDARG00000084186' => 'snoMBII-202',
	'ENSDARG00000085320' => 'snoMBII-202',
	'ENSG00000167526' => 'RPL13',
	'ENSG00000178773' => 'CPNE7',
	'ENSG00000200084' => 'SNORD68',
	'ENSMUSG00000000740' => 'Rpl13',
	'ENSMUSG00000034796' => 'Cpne7',
	'ENSMUSG00000064450' => 'Snord68',
	'ENSMUSG00000098550' => 'Mir7079',
	'ENSMUSG00000098582' => 'Mir7080'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0001',
			'tax_id' => '7955',
			'chromosome' => '7',
			'seq_start' => '69521681',
			'seq_end' => '69648797',
			'region_length' => '127116',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000030585-ENSDARG00000037084'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '89560657',
			'seq_end' => '89597246',
			'region_length' => '36589',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000167526-ENSG00000178773'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '123102350',
			'seq_end' => '123135182',
			'region_length' => '32832',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000000740-ENSMUSG00000034796'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 12 => 'Bladder',
	(int) 14 => 'Brain',
	(int) 21 => 'Breast',
	(int) 30 => 'Colon',
	(int) 34 => 'Heart',
	(int) 42 => 'Kidney',
	(int) 51 => 'Liver',
	(int) 59 => 'Lung',
	(int) 63 => 'Muscle',
	(int) 69 => 'Ovary',
	(int) 81 => 'Placenta',
	(int) 89 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 45
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000047391' => array(
		'start' => '69521681',
		'end' => '69531116',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-001'
	),
	'ENSDART00000149628' => array(
		'start' => '69521721',
		'end' => '69527575',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-002'
	),
	'ENSDART00000149670' => array(
		'start' => '69522965',
		'end' => '69527576',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'rpl13-003'
	),
	'ENSDART00000091052' => array(
		'start' => '69548086',
		'end' => '69648039',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-201'
	),
	'ENSDART00000155249' => array(
		'start' => '69540786',
		'end' => '69648797',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENSDART00000118328' => array(
		'start' => '69527371',
		'end' => '69527453',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.1-201'
	),
	'ENSDART00000119586' => array(
		'start' => '69525336',
		'end' => '69525417',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.2-201'
	),
	'ENSDART00000120720' => array(
		'start' => '69530134',
		'end' => '69530210',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.3-201'
	),
	'ENST00000311528' => array(
		'start' => '89560657',
		'end' => '89566828',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-001'
	),
	'ENST00000393099' => array(
		'start' => '89560711',
		'end' => '89564542',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-002'
	),
	'ENST00000399461' => array(
		'start' => '89560904',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-003'
	),
	'ENST00000452368' => array(
		'start' => '89560683',
		'end' => '89563952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-015'
	),
	'ENST00000467736' => array(
		'start' => '89560711',
		'end' => '89561710',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-006'
	),
	'ENST00000472354' => array(
		'start' => '89562370',
		'end' => '89563438',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-008'
	),
	'ENST00000484610' => array(
		'start' => '89560679',
		'end' => '89563067',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-004'
	),
	'ENST00000487034' => array(
		'start' => '89560682',
		'end' => '89561523',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-007'
	),
	'ENST00000491523' => array(
		'start' => '89560677',
		'end' => '89562393',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-005'
	),
	'ENST00000562879' => array(
		'start' => '89560682',
		'end' => '89563473',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RPL13-011'
	),
	'ENST00000563270' => array(
		'start' => '89560681',
		'end' => '89563032',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-016'
	),
	'ENST00000563749' => array(
		'start' => '89560677',
		'end' => '89563043',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-010'
	),
	'ENST00000565571' => array(
		'start' => '89560683',
		'end' => '89561849',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-018'
	),
	'ENST00000567815' => array(
		'start' => '89560681',
		'end' => '89563080',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-009'
	),
	'ENST00000570149' => array(
		'start' => '89562140',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-017'
	),
	'ENST00000268720' => array(
		'start' => '89575768',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-002'
	),
	'ENST00000319518' => array(
		'start' => '89575791',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENST00000525982' => array(
		'start' => '89575782',
		'end' => '89583714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-003'
	),
	'ENST00000526232' => array(
		'start' => '89595576',
		'end' => '89596849',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-006'
	),
	'ENST00000529800' => array(
		'start' => '89587043',
		'end' => '89595423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-004'
	),
	'ENST00000532500' => array(
		'start' => '89584821',
		'end' => '89587732',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CPNE7-005'
	),
	'ENST00000564421' => array(
		'start' => '89595770',
		'end' => '89596845',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-009'
	),
	'ENST00000566398' => array(
		'start' => '89594100',
		'end' => '89596859',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-008'
	),
	'ENST00000568977' => array(
		'start' => '89588804',
		'end' => '89596816',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-010'
	),
	'ENST00000363214' => array(
		'start' => '89561434',
		'end' => '89561517',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'SNORD68-201'
	),
	'ENSMUST00000000756' => array(
		'start' => '123102350',
		'end' => '123105244',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rpl13-001'
	),
	'ENSMUST00000129311' => array(
		'start' => '123102653',
		'end' => '123105244',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-002'
	),
	'ENSMUST00000132275' => array(
		'start' => '123102653',
		'end' => '123104464',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-004'
	),
	'ENSMUST00000152444' => array(
		'start' => '123102651',
		'end' => '123103641',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-003'
	),
	'ENSMUST00000037900' => array(
		'start' => '123117378',
		'end' => '123135182',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Cpne7-001'
	),
	'ENSMUST00000123191' => array(
		'start' => '123126517',
		'end' => '123127373',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Cpne7-005'
	),
	'ENSMUST00000127431' => array(
		'start' => '123128623',
		'end' => '123131892',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-004'
	),
	'ENSMUST00000131659' => array(
		'start' => '123117447',
		'end' => '123135182',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-002'
	),
	'ENSMUST00000134235' => array(
		'start' => '123117374',
		'end' => '123135180',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-003'
	),
	'ENSMUST00000082516' => array(
		'start' => '123103038',
		'end' => '123103123',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'Snord68-201'
	),
	'ENSMUST00000184697' => array(
		'start' => '123104975',
		'end' => '123105043',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7079-201'
	),
	'ENSMUST00000184815' => array(
		'start' => '123130106',
		'end' => '123130172',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7080-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0006AP_0002',
		'tax_id' => '9606',
		'chromosome' => '16',
		'seq_start' => '89560657',
		'seq_end' => '89597246',
		'region_length' => '36589',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000167526-ENSG00000178773'
	)
)
$gene_el = array(
	'ENSDART00000120720' => array(
		'Heart' => array(
			'average_FPKM' => '4.550',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSDARG00000085320'
$is_first = false
$tran_el = array(
	'Heart' => array(
		'average_FPKM' => '4.550',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSDART00000120720'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000030585' => 'ribosomal protein L13',
		'ENSDARG00000037084' => 'copine VII',
		'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
		'ENSG00000167526' => 'ribosomal protein L13',
		'ENSG00000178773' => 'copine VII',
		'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000000740' => 'ribosomal protein L13',
		'ENSMUSG00000034796' => 'copine VII',
		'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000098550' => 'microRNA 7079',
		'ENSMUSG00000098582' => 'microRNA 7080'
	),
	'gene_name_arr' => array(
		'ENSDARG00000030585' => 'rpl13',
		'ENSDARG00000037084' => 'CPNE7',
		'ENSDARG00000080268' => 'snoMBII-202',
		'ENSDARG00000084186' => 'snoMBII-202',
		'ENSDARG00000085320' => 'snoMBII-202',
		'ENSG00000167526' => 'RPL13',
		'ENSG00000178773' => 'CPNE7',
		'ENSG00000200084' => 'SNORD68',
		'ENSMUSG00000000740' => 'Rpl13',
		'ENSMUSG00000034796' => 'Cpne7',
		'ENSMUSG00000064450' => 'Snord68',
		'ENSMUSG00000098550' => 'Mir7079',
		'ENSMUSG00000098582' => 'Mir7080'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 12 => 'Bladder',
		(int) 14 => 'Brain',
		(int) 21 => 'Breast',
		(int) 30 => 'Colon',
		(int) 34 => 'Heart',
		(int) 42 => 'Kidney',
		(int) 51 => 'Liver',
		(int) 59 => 'Lung',
		(int) 63 => 'Muscle',
		(int) 69 => 'Ovary',
		(int) 81 => 'Placenta',
		(int) 89 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 45,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000047391' => array(
			'start' => '69521681',
			'end' => '69531116',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-001'
		),
		'ENSDART00000149628' => array(
			'start' => '69521721',
			'end' => '69527575',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-002'
		),
		'ENSDART00000149670' => array(
			'start' => '69522965',
			'end' => '69527576',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'rpl13-003'
		),
		'ENSDART00000091052' => array(
			'start' => '69548086',
			'end' => '69648039',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-201'
		),
		'ENSDART00000155249' => array(
			'start' => '69540786',
			'end' => '69648797',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENSDART00000118328' => array(
			'start' => '69527371',
			'end' => '69527453',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.1-201'
		),
		'ENSDART00000119586' => array(
			'start' => '69525336',
			'end' => '69525417',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.2-201'
		),
		'ENSDART00000120720' => array(
			'start' => '69530134',
			'end' => '69530210',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.3-201'
		),
		'ENST00000311528' => array(
			'start' => '89560657',
			'end' => '89566828',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-001'
		),
		'ENST00000393099' => array(
			'start' => '89560711',
			'end' => '89564542',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-002'
		),
		'ENST00000399461' => array(
			'start' => '89560904',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-003'
		),
		'ENST00000452368' => array(
			'start' => '89560683',
			'end' => '89563952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-015'
		),
		'ENST00000467736' => array(
			'start' => '89560711',
			'end' => '89561710',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-006'
		),
		'ENST00000472354' => array(
			'start' => '89562370',
			'end' => '89563438',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-008'
		),
		'ENST00000484610' => array(
			'start' => '89560679',
			'end' => '89563067',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-004'
		),
		'ENST00000487034' => array(
			'start' => '89560682',
			'end' => '89561523',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-007'
		),
		'ENST00000491523' => array(
			'start' => '89560677',
			'end' => '89562393',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-005'
		),
		'ENST00000562879' => array(
			'start' => '89560682',
			'end' => '89563473',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RPL13-011'
		),
		'ENST00000563270' => array(
			'start' => '89560681',
			'end' => '89563032',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-016'
		),
		'ENST00000563749' => array(
			'start' => '89560677',
			'end' => '89563043',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-010'
		),
		'ENST00000565571' => array(
			'start' => '89560683',
			'end' => '89561849',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-018'
		),
		'ENST00000567815' => array(
			'start' => '89560681',
			'end' => '89563080',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-009'
		),
		'ENST00000570149' => array(
			'start' => '89562140',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-017'
		),
		'ENST00000268720' => array(
			'start' => '89575768',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-002'
		),
		'ENST00000319518' => array(
			'start' => '89575791',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENST00000525982' => array(
			'start' => '89575782',
			'end' => '89583714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-003'
		),
		'ENST00000526232' => array(
			'start' => '89595576',
			'end' => '89596849',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-006'
		),
		'ENST00000529800' => array(
			'start' => '89587043',
			'end' => '89595423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-004'
		),
		'ENST00000532500' => array(
			'start' => '89584821',
			'end' => '89587732',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CPNE7-005'
		),
		'ENST00000564421' => array(
			'start' => '89595770',
			'end' => '89596845',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-009'
		),
		'ENST00000566398' => array(
			'start' => '89594100',
			'end' => '89596859',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-008'
		),
		'ENST00000568977' => array(
			'start' => '89588804',
			'end' => '89596816',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-010'
		),
		'ENST00000363214' => array(
			'start' => '89561434',
			'end' => '89561517',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'SNORD68-201'
		),
		'ENSMUST00000000756' => array(
			'start' => '123102350',
			'end' => '123105244',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rpl13-001'
		),
		'ENSMUST00000129311' => array(
			'start' => '123102653',
			'end' => '123105244',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-002'
		),
		'ENSMUST00000132275' => array(
			'start' => '123102653',
			'end' => '123104464',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-004'
		),
		'ENSMUST00000152444' => array(
			'start' => '123102651',
			'end' => '123103641',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-003'
		),
		'ENSMUST00000037900' => array(
			'start' => '123117378',
			'end' => '123135182',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Cpne7-001'
		),
		'ENSMUST00000123191' => array(
			'start' => '123126517',
			'end' => '123127373',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Cpne7-005'
		),
		'ENSMUST00000127431' => array(
			'start' => '123128623',
			'end' => '123131892',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-004'
		),
		'ENSMUST00000131659' => array(
			'start' => '123117447',
			'end' => '123135182',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-002'
		),
		'ENSMUST00000134235' => array(
			'start' => '123117374',
			'end' => '123135180',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-003'
		),
		'ENSMUST00000082516' => array(
			'start' => '123103038',
			'end' => '123103123',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'Snord68-201'
		),
		'ENSMUST00000184697' => array(
			'start' => '123104975',
			'end' => '123105043',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7079-201'
		),
		'ENSMUST00000184815' => array(
			'start' => '123130106',
			'end' => '123130172',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7080-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000030585' => 'ribosomal protein L13',
	'ENSDARG00000037084' => 'copine VII',
	'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
	'ENSG00000167526' => 'ribosomal protein L13',
	'ENSG00000178773' => 'copine VII',
	'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000000740' => 'ribosomal protein L13',
	'ENSMUSG00000034796' => 'copine VII',
	'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000098550' => 'microRNA 7079',
	'ENSMUSG00000098582' => 'microRNA 7080'
)
$gene_name_arr = array(
	'ENSDARG00000030585' => 'rpl13',
	'ENSDARG00000037084' => 'CPNE7',
	'ENSDARG00000080268' => 'snoMBII-202',
	'ENSDARG00000084186' => 'snoMBII-202',
	'ENSDARG00000085320' => 'snoMBII-202',
	'ENSG00000167526' => 'RPL13',
	'ENSG00000178773' => 'CPNE7',
	'ENSG00000200084' => 'SNORD68',
	'ENSMUSG00000000740' => 'Rpl13',
	'ENSMUSG00000034796' => 'Cpne7',
	'ENSMUSG00000064450' => 'Snord68',
	'ENSMUSG00000098550' => 'Mir7079',
	'ENSMUSG00000098582' => 'Mir7080'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0001',
			'tax_id' => '7955',
			'chromosome' => '7',
			'seq_start' => '69521681',
			'seq_end' => '69648797',
			'region_length' => '127116',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000030585-ENSDARG00000037084'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '89560657',
			'seq_end' => '89597246',
			'region_length' => '36589',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000167526-ENSG00000178773'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '123102350',
			'seq_end' => '123135182',
			'region_length' => '32832',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000000740-ENSMUSG00000034796'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 12 => 'Bladder',
	(int) 14 => 'Brain',
	(int) 21 => 'Breast',
	(int) 30 => 'Colon',
	(int) 34 => 'Heart',
	(int) 42 => 'Kidney',
	(int) 51 => 'Liver',
	(int) 59 => 'Lung',
	(int) 63 => 'Muscle',
	(int) 69 => 'Ovary',
	(int) 81 => 'Placenta',
	(int) 89 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 45
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000047391' => array(
		'start' => '69521681',
		'end' => '69531116',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-001'
	),
	'ENSDART00000149628' => array(
		'start' => '69521721',
		'end' => '69527575',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-002'
	),
	'ENSDART00000149670' => array(
		'start' => '69522965',
		'end' => '69527576',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'rpl13-003'
	),
	'ENSDART00000091052' => array(
		'start' => '69548086',
		'end' => '69648039',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-201'
	),
	'ENSDART00000155249' => array(
		'start' => '69540786',
		'end' => '69648797',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENSDART00000118328' => array(
		'start' => '69527371',
		'end' => '69527453',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.1-201'
	),
	'ENSDART00000119586' => array(
		'start' => '69525336',
		'end' => '69525417',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.2-201'
	),
	'ENSDART00000120720' => array(
		'start' => '69530134',
		'end' => '69530210',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.3-201'
	),
	'ENST00000311528' => array(
		'start' => '89560657',
		'end' => '89566828',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-001'
	),
	'ENST00000393099' => array(
		'start' => '89560711',
		'end' => '89564542',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-002'
	),
	'ENST00000399461' => array(
		'start' => '89560904',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-003'
	),
	'ENST00000452368' => array(
		'start' => '89560683',
		'end' => '89563952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-015'
	),
	'ENST00000467736' => array(
		'start' => '89560711',
		'end' => '89561710',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-006'
	),
	'ENST00000472354' => array(
		'start' => '89562370',
		'end' => '89563438',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-008'
	),
	'ENST00000484610' => array(
		'start' => '89560679',
		'end' => '89563067',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-004'
	),
	'ENST00000487034' => array(
		'start' => '89560682',
		'end' => '89561523',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-007'
	),
	'ENST00000491523' => array(
		'start' => '89560677',
		'end' => '89562393',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-005'
	),
	'ENST00000562879' => array(
		'start' => '89560682',
		'end' => '89563473',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RPL13-011'
	),
	'ENST00000563270' => array(
		'start' => '89560681',
		'end' => '89563032',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-016'
	),
	'ENST00000563749' => array(
		'start' => '89560677',
		'end' => '89563043',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-010'
	),
	'ENST00000565571' => array(
		'start' => '89560683',
		'end' => '89561849',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-018'
	),
	'ENST00000567815' => array(
		'start' => '89560681',
		'end' => '89563080',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-009'
	),
	'ENST00000570149' => array(
		'start' => '89562140',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-017'
	),
	'ENST00000268720' => array(
		'start' => '89575768',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-002'
	),
	'ENST00000319518' => array(
		'start' => '89575791',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENST00000525982' => array(
		'start' => '89575782',
		'end' => '89583714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-003'
	),
	'ENST00000526232' => array(
		'start' => '89595576',
		'end' => '89596849',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-006'
	),
	'ENST00000529800' => array(
		'start' => '89587043',
		'end' => '89595423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-004'
	),
	'ENST00000532500' => array(
		'start' => '89584821',
		'end' => '89587732',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CPNE7-005'
	),
	'ENST00000564421' => array(
		'start' => '89595770',
		'end' => '89596845',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-009'
	),
	'ENST00000566398' => array(
		'start' => '89594100',
		'end' => '89596859',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-008'
	),
	'ENST00000568977' => array(
		'start' => '89588804',
		'end' => '89596816',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-010'
	),
	'ENST00000363214' => array(
		'start' => '89561434',
		'end' => '89561517',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'SNORD68-201'
	),
	'ENSMUST00000000756' => array(
		'start' => '123102350',
		'end' => '123105244',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rpl13-001'
	),
	'ENSMUST00000129311' => array(
		'start' => '123102653',
		'end' => '123105244',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-002'
	),
	'ENSMUST00000132275' => array(
		'start' => '123102653',
		'end' => '123104464',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-004'
	),
	'ENSMUST00000152444' => array(
		'start' => '123102651',
		'end' => '123103641',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-003'
	),
	'ENSMUST00000037900' => array(
		'start' => '123117378',
		'end' => '123135182',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Cpne7-001'
	),
	'ENSMUST00000123191' => array(
		'start' => '123126517',
		'end' => '123127373',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Cpne7-005'
	),
	'ENSMUST00000127431' => array(
		'start' => '123128623',
		'end' => '123131892',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-004'
	),
	'ENSMUST00000131659' => array(
		'start' => '123117447',
		'end' => '123135182',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-002'
	),
	'ENSMUST00000134235' => array(
		'start' => '123117374',
		'end' => '123135180',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-003'
	),
	'ENSMUST00000082516' => array(
		'start' => '123103038',
		'end' => '123103123',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'Snord68-201'
	),
	'ENSMUST00000184697' => array(
		'start' => '123104975',
		'end' => '123105043',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7079-201'
	),
	'ENSMUST00000184815' => array(
		'start' => '123130106',
		'end' => '123130172',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7080-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0006AP_0002',
		'tax_id' => '9606',
		'chromosome' => '16',
		'seq_start' => '89560657',
		'seq_end' => '89597246',
		'region_length' => '36589',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000167526-ENSG00000178773'
	)
)
$gene_el = array(
	'ENSDART00000120720' => array(
		'Heart' => array(
			'average_FPKM' => '4.550',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSDARG00000085320'
$is_first = false
$tran_el = array(
	'Heart' => array(
		'average_FPKM' => '4.550',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSDART00000120720'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000167526-ENSG00000178773		CGP	9606	16:89560657-89597246
Gene		Transcript	Position	Biotype

Genome

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Genes

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Transcripts

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CIL_0006AP_0003 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0006AP_0003 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000030585' => 'ribosomal protein L13',
		'ENSDARG00000037084' => 'copine VII',
		'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
		'ENSG00000167526' => 'ribosomal protein L13',
		'ENSG00000178773' => 'copine VII',
		'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000000740' => 'ribosomal protein L13',
		'ENSMUSG00000034796' => 'copine VII',
		'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000098550' => 'microRNA 7079',
		'ENSMUSG00000098582' => 'microRNA 7080'
	),
	'gene_name_arr' => array(
		'ENSDARG00000030585' => 'rpl13',
		'ENSDARG00000037084' => 'CPNE7',
		'ENSDARG00000080268' => 'snoMBII-202',
		'ENSDARG00000084186' => 'snoMBII-202',
		'ENSDARG00000085320' => 'snoMBII-202',
		'ENSG00000167526' => 'RPL13',
		'ENSG00000178773' => 'CPNE7',
		'ENSG00000200084' => 'SNORD68',
		'ENSMUSG00000000740' => 'Rpl13',
		'ENSMUSG00000034796' => 'Cpne7',
		'ENSMUSG00000064450' => 'Snord68',
		'ENSMUSG00000098550' => 'Mir7079',
		'ENSMUSG00000098582' => 'Mir7080'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 12 => 'Bladder',
		(int) 14 => 'Brain',
		(int) 21 => 'Breast',
		(int) 30 => 'Colon',
		(int) 34 => 'Heart',
		(int) 42 => 'Kidney',
		(int) 51 => 'Liver',
		(int) 59 => 'Lung',
		(int) 63 => 'Muscle',
		(int) 69 => 'Ovary',
		(int) 81 => 'Placenta',
		(int) 89 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 45,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000047391' => array(
			'start' => '69521681',
			'end' => '69531116',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-001'
		),
		'ENSDART00000149628' => array(
			'start' => '69521721',
			'end' => '69527575',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-002'
		),
		'ENSDART00000149670' => array(
			'start' => '69522965',
			'end' => '69527576',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'rpl13-003'
		),
		'ENSDART00000091052' => array(
			'start' => '69548086',
			'end' => '69648039',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-201'
		),
		'ENSDART00000155249' => array(
			'start' => '69540786',
			'end' => '69648797',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENSDART00000118328' => array(
			'start' => '69527371',
			'end' => '69527453',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.1-201'
		),
		'ENSDART00000119586' => array(
			'start' => '69525336',
			'end' => '69525417',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.2-201'
		),
		'ENSDART00000120720' => array(
			'start' => '69530134',
			'end' => '69530210',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.3-201'
		),
		'ENST00000311528' => array(
			'start' => '89560657',
			'end' => '89566828',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-001'
		),
		'ENST00000393099' => array(
			'start' => '89560711',
			'end' => '89564542',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-002'
		),
		'ENST00000399461' => array(
			'start' => '89560904',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-003'
		),
		'ENST00000452368' => array(
			'start' => '89560683',
			'end' => '89563952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-015'
		),
		'ENST00000467736' => array(
			'start' => '89560711',
			'end' => '89561710',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-006'
		),
		'ENST00000472354' => array(
			'start' => '89562370',
			'end' => '89563438',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-008'
		),
		'ENST00000484610' => array(
			'start' => '89560679',
			'end' => '89563067',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-004'
		),
		'ENST00000487034' => array(
			'start' => '89560682',
			'end' => '89561523',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-007'
		),
		'ENST00000491523' => array(
			'start' => '89560677',
			'end' => '89562393',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-005'
		),
		'ENST00000562879' => array(
			'start' => '89560682',
			'end' => '89563473',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RPL13-011'
		),
		'ENST00000563270' => array(
			'start' => '89560681',
			'end' => '89563032',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-016'
		),
		'ENST00000563749' => array(
			'start' => '89560677',
			'end' => '89563043',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-010'
		),
		'ENST00000565571' => array(
			'start' => '89560683',
			'end' => '89561849',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-018'
		),
		'ENST00000567815' => array(
			'start' => '89560681',
			'end' => '89563080',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-009'
		),
		'ENST00000570149' => array(
			'start' => '89562140',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-017'
		),
		'ENST00000268720' => array(
			'start' => '89575768',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-002'
		),
		'ENST00000319518' => array(
			'start' => '89575791',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENST00000525982' => array(
			'start' => '89575782',
			'end' => '89583714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-003'
		),
		'ENST00000526232' => array(
			'start' => '89595576',
			'end' => '89596849',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-006'
		),
		'ENST00000529800' => array(
			'start' => '89587043',
			'end' => '89595423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-004'
		),
		'ENST00000532500' => array(
			'start' => '89584821',
			'end' => '89587732',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CPNE7-005'
		),
		'ENST00000564421' => array(
			'start' => '89595770',
			'end' => '89596845',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-009'
		),
		'ENST00000566398' => array(
			'start' => '89594100',
			'end' => '89596859',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-008'
		),
		'ENST00000568977' => array(
			'start' => '89588804',
			'end' => '89596816',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-010'
		),
		'ENST00000363214' => array(
			'start' => '89561434',
			'end' => '89561517',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'SNORD68-201'
		),
		'ENSMUST00000000756' => array(
			'start' => '123102350',
			'end' => '123105244',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rpl13-001'
		),
		'ENSMUST00000129311' => array(
			'start' => '123102653',
			'end' => '123105244',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-002'
		),
		'ENSMUST00000132275' => array(
			'start' => '123102653',
			'end' => '123104464',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-004'
		),
		'ENSMUST00000152444' => array(
			'start' => '123102651',
			'end' => '123103641',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-003'
		),
		'ENSMUST00000037900' => array(
			'start' => '123117378',
			'end' => '123135182',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Cpne7-001'
		),
		'ENSMUST00000123191' => array(
			'start' => '123126517',
			'end' => '123127373',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Cpne7-005'
		),
		'ENSMUST00000127431' => array(
			'start' => '123128623',
			'end' => '123131892',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-004'
		),
		'ENSMUST00000131659' => array(
			'start' => '123117447',
			'end' => '123135182',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-002'
		),
		'ENSMUST00000134235' => array(
			'start' => '123117374',
			'end' => '123135180',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-003'
		),
		'ENSMUST00000082516' => array(
			'start' => '123103038',
			'end' => '123103123',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'Snord68-201'
		),
		'ENSMUST00000184697' => array(
			'start' => '123104975',
			'end' => '123105043',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7079-201'
		),
		'ENSMUST00000184815' => array(
			'start' => '123130106',
			'end' => '123130172',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7080-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000030585' => 'ribosomal protein L13',
	'ENSDARG00000037084' => 'copine VII',
	'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
	'ENSG00000167526' => 'ribosomal protein L13',
	'ENSG00000178773' => 'copine VII',
	'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000000740' => 'ribosomal protein L13',
	'ENSMUSG00000034796' => 'copine VII',
	'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000098550' => 'microRNA 7079',
	'ENSMUSG00000098582' => 'microRNA 7080'
)
$gene_name_arr = array(
	'ENSDARG00000030585' => 'rpl13',
	'ENSDARG00000037084' => 'CPNE7',
	'ENSDARG00000080268' => 'snoMBII-202',
	'ENSDARG00000084186' => 'snoMBII-202',
	'ENSDARG00000085320' => 'snoMBII-202',
	'ENSG00000167526' => 'RPL13',
	'ENSG00000178773' => 'CPNE7',
	'ENSG00000200084' => 'SNORD68',
	'ENSMUSG00000000740' => 'Rpl13',
	'ENSMUSG00000034796' => 'Cpne7',
	'ENSMUSG00000064450' => 'Snord68',
	'ENSMUSG00000098550' => 'Mir7079',
	'ENSMUSG00000098582' => 'Mir7080'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0001',
			'tax_id' => '7955',
			'chromosome' => '7',
			'seq_start' => '69521681',
			'seq_end' => '69648797',
			'region_length' => '127116',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000030585-ENSDARG00000037084'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '89560657',
			'seq_end' => '89597246',
			'region_length' => '36589',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000167526-ENSG00000178773'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '123102350',
			'seq_end' => '123135182',
			'region_length' => '32832',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000000740-ENSMUSG00000034796'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 12 => 'Bladder',
	(int) 14 => 'Brain',
	(int) 21 => 'Breast',
	(int) 30 => 'Colon',
	(int) 34 => 'Heart',
	(int) 42 => 'Kidney',
	(int) 51 => 'Liver',
	(int) 59 => 'Lung',
	(int) 63 => 'Muscle',
	(int) 69 => 'Ovary',
	(int) 81 => 'Placenta',
	(int) 89 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 45
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000047391' => array(
		'start' => '69521681',
		'end' => '69531116',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-001'
	),
	'ENSDART00000149628' => array(
		'start' => '69521721',
		'end' => '69527575',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-002'
	),
	'ENSDART00000149670' => array(
		'start' => '69522965',
		'end' => '69527576',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'rpl13-003'
	),
	'ENSDART00000091052' => array(
		'start' => '69548086',
		'end' => '69648039',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-201'
	),
	'ENSDART00000155249' => array(
		'start' => '69540786',
		'end' => '69648797',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENSDART00000118328' => array(
		'start' => '69527371',
		'end' => '69527453',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.1-201'
	),
	'ENSDART00000119586' => array(
		'start' => '69525336',
		'end' => '69525417',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.2-201'
	),
	'ENSDART00000120720' => array(
		'start' => '69530134',
		'end' => '69530210',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.3-201'
	),
	'ENST00000311528' => array(
		'start' => '89560657',
		'end' => '89566828',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-001'
	),
	'ENST00000393099' => array(
		'start' => '89560711',
		'end' => '89564542',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-002'
	),
	'ENST00000399461' => array(
		'start' => '89560904',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-003'
	),
	'ENST00000452368' => array(
		'start' => '89560683',
		'end' => '89563952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-015'
	),
	'ENST00000467736' => array(
		'start' => '89560711',
		'end' => '89561710',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-006'
	),
	'ENST00000472354' => array(
		'start' => '89562370',
		'end' => '89563438',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-008'
	),
	'ENST00000484610' => array(
		'start' => '89560679',
		'end' => '89563067',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-004'
	),
	'ENST00000487034' => array(
		'start' => '89560682',
		'end' => '89561523',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-007'
	),
	'ENST00000491523' => array(
		'start' => '89560677',
		'end' => '89562393',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-005'
	),
	'ENST00000562879' => array(
		'start' => '89560682',
		'end' => '89563473',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RPL13-011'
	),
	'ENST00000563270' => array(
		'start' => '89560681',
		'end' => '89563032',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-016'
	),
	'ENST00000563749' => array(
		'start' => '89560677',
		'end' => '89563043',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-010'
	),
	'ENST00000565571' => array(
		'start' => '89560683',
		'end' => '89561849',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-018'
	),
	'ENST00000567815' => array(
		'start' => '89560681',
		'end' => '89563080',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-009'
	),
	'ENST00000570149' => array(
		'start' => '89562140',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-017'
	),
	'ENST00000268720' => array(
		'start' => '89575768',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-002'
	),
	'ENST00000319518' => array(
		'start' => '89575791',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENST00000525982' => array(
		'start' => '89575782',
		'end' => '89583714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-003'
	),
	'ENST00000526232' => array(
		'start' => '89595576',
		'end' => '89596849',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-006'
	),
	'ENST00000529800' => array(
		'start' => '89587043',
		'end' => '89595423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-004'
	),
	'ENST00000532500' => array(
		'start' => '89584821',
		'end' => '89587732',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CPNE7-005'
	),
	'ENST00000564421' => array(
		'start' => '89595770',
		'end' => '89596845',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-009'
	),
	'ENST00000566398' => array(
		'start' => '89594100',
		'end' => '89596859',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-008'
	),
	'ENST00000568977' => array(
		'start' => '89588804',
		'end' => '89596816',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-010'
	),
	'ENST00000363214' => array(
		'start' => '89561434',
		'end' => '89561517',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'SNORD68-201'
	),
	'ENSMUST00000000756' => array(
		'start' => '123102350',
		'end' => '123105244',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rpl13-001'
	),
	'ENSMUST00000129311' => array(
		'start' => '123102653',
		'end' => '123105244',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-002'
	),
	'ENSMUST00000132275' => array(
		'start' => '123102653',
		'end' => '123104464',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-004'
	),
	'ENSMUST00000152444' => array(
		'start' => '123102651',
		'end' => '123103641',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-003'
	),
	'ENSMUST00000037900' => array(
		'start' => '123117378',
		'end' => '123135182',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Cpne7-001'
	),
	'ENSMUST00000123191' => array(
		'start' => '123126517',
		'end' => '123127373',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Cpne7-005'
	),
	'ENSMUST00000127431' => array(
		'start' => '123128623',
		'end' => '123131892',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-004'
	),
	'ENSMUST00000131659' => array(
		'start' => '123117447',
		'end' => '123135182',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-002'
	),
	'ENSMUST00000134235' => array(
		'start' => '123117374',
		'end' => '123135180',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-003'
	),
	'ENSMUST00000082516' => array(
		'start' => '123103038',
		'end' => '123103123',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'Snord68-201'
	),
	'ENSMUST00000184697' => array(
		'start' => '123104975',
		'end' => '123105043',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7079-201'
	),
	'ENSMUST00000184815' => array(
		'start' => '123130106',
		'end' => '123130172',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7080-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0006AP_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '123102350',
		'seq_end' => '123135182',
		'region_length' => '32832',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000000740-ENSMUSG00000034796'
	)
)
$gene_el = array(
	'ENSDART00000120720' => array(
		'Heart' => array(
			'average_FPKM' => '4.550',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSDARG00000085320'
$is_first = false
$tran_el = array(
	'Heart' => array(
		'average_FPKM' => '4.550',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSDART00000120720'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000030585' => 'ribosomal protein L13',
		'ENSDARG00000037084' => 'copine VII',
		'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
		'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
		'ENSG00000167526' => 'ribosomal protein L13',
		'ENSG00000178773' => 'copine VII',
		'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000000740' => 'ribosomal protein L13',
		'ENSMUSG00000034796' => 'copine VII',
		'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
		'ENSMUSG00000098550' => 'microRNA 7079',
		'ENSMUSG00000098582' => 'microRNA 7080'
	),
	'gene_name_arr' => array(
		'ENSDARG00000030585' => 'rpl13',
		'ENSDARG00000037084' => 'CPNE7',
		'ENSDARG00000080268' => 'snoMBII-202',
		'ENSDARG00000084186' => 'snoMBII-202',
		'ENSDARG00000085320' => 'snoMBII-202',
		'ENSG00000167526' => 'RPL13',
		'ENSG00000178773' => 'CPNE7',
		'ENSG00000200084' => 'SNORD68',
		'ENSMUSG00000000740' => 'Rpl13',
		'ENSMUSG00000034796' => 'Cpne7',
		'ENSMUSG00000064450' => 'Snord68',
		'ENSMUSG00000098550' => 'Mir7079',
		'ENSMUSG00000098582' => 'Mir7080'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 12 => 'Bladder',
		(int) 14 => 'Brain',
		(int) 21 => 'Breast',
		(int) 30 => 'Colon',
		(int) 34 => 'Heart',
		(int) 42 => 'Kidney',
		(int) 51 => 'Liver',
		(int) 59 => 'Lung',
		(int) 63 => 'Muscle',
		(int) 69 => 'Ovary',
		(int) 81 => 'Placenta',
		(int) 89 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 45,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000047391' => array(
			'start' => '69521681',
			'end' => '69531116',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-001'
		),
		'ENSDART00000149628' => array(
			'start' => '69521721',
			'end' => '69527575',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'rpl13-002'
		),
		'ENSDART00000149670' => array(
			'start' => '69522965',
			'end' => '69527576',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'rpl13-003'
		),
		'ENSDART00000091052' => array(
			'start' => '69548086',
			'end' => '69648039',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-201'
		),
		'ENSDART00000155249' => array(
			'start' => '69540786',
			'end' => '69648797',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENSDART00000118328' => array(
			'start' => '69527371',
			'end' => '69527453',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.1-201'
		),
		'ENSDART00000119586' => array(
			'start' => '69525336',
			'end' => '69525417',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.2-201'
		),
		'ENSDART00000120720' => array(
			'start' => '69530134',
			'end' => '69530210',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'snoMBII-202.3-201'
		),
		'ENST00000311528' => array(
			'start' => '89560657',
			'end' => '89566828',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-001'
		),
		'ENST00000393099' => array(
			'start' => '89560711',
			'end' => '89564542',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-002'
		),
		'ENST00000399461' => array(
			'start' => '89560904',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-003'
		),
		'ENST00000452368' => array(
			'start' => '89560683',
			'end' => '89563952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-015'
		),
		'ENST00000467736' => array(
			'start' => '89560711',
			'end' => '89561710',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-006'
		),
		'ENST00000472354' => array(
			'start' => '89562370',
			'end' => '89563438',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-008'
		),
		'ENST00000484610' => array(
			'start' => '89560679',
			'end' => '89563067',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-004'
		),
		'ENST00000487034' => array(
			'start' => '89560682',
			'end' => '89561523',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-007'
		),
		'ENST00000491523' => array(
			'start' => '89560677',
			'end' => '89562393',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-005'
		),
		'ENST00000562879' => array(
			'start' => '89560682',
			'end' => '89563473',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RPL13-011'
		),
		'ENST00000563270' => array(
			'start' => '89560681',
			'end' => '89563032',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-016'
		),
		'ENST00000563749' => array(
			'start' => '89560677',
			'end' => '89563043',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-010'
		),
		'ENST00000565571' => array(
			'start' => '89560683',
			'end' => '89561849',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-018'
		),
		'ENST00000567815' => array(
			'start' => '89560681',
			'end' => '89563080',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RPL13-009'
		),
		'ENST00000570149' => array(
			'start' => '89562140',
			'end' => '89563066',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RPL13-017'
		),
		'ENST00000268720' => array(
			'start' => '89575768',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-002'
		),
		'ENST00000319518' => array(
			'start' => '89575791',
			'end' => '89597246',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-001'
		),
		'ENST00000525982' => array(
			'start' => '89575782',
			'end' => '89583714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-003'
		),
		'ENST00000526232' => array(
			'start' => '89595576',
			'end' => '89596849',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-006'
		),
		'ENST00000529800' => array(
			'start' => '89587043',
			'end' => '89595423',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'CPNE7-004'
		),
		'ENST00000532500' => array(
			'start' => '89584821',
			'end' => '89587732',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'CPNE7-005'
		),
		'ENST00000564421' => array(
			'start' => '89595770',
			'end' => '89596845',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-009'
		),
		'ENST00000566398' => array(
			'start' => '89594100',
			'end' => '89596859',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'CPNE7-008'
		),
		'ENST00000568977' => array(
			'start' => '89588804',
			'end' => '89596816',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'CPNE7-010'
		),
		'ENST00000363214' => array(
			'start' => '89561434',
			'end' => '89561517',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'SNORD68-201'
		),
		'ENSMUST00000000756' => array(
			'start' => '123102350',
			'end' => '123105244',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rpl13-001'
		),
		'ENSMUST00000129311' => array(
			'start' => '123102653',
			'end' => '123105244',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-002'
		),
		'ENSMUST00000132275' => array(
			'start' => '123102653',
			'end' => '123104464',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-004'
		),
		'ENSMUST00000152444' => array(
			'start' => '123102651',
			'end' => '123103641',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rpl13-003'
		),
		'ENSMUST00000037900' => array(
			'start' => '123117378',
			'end' => '123135182',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Cpne7-001'
		),
		'ENSMUST00000123191' => array(
			'start' => '123126517',
			'end' => '123127373',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Cpne7-005'
		),
		'ENSMUST00000127431' => array(
			'start' => '123128623',
			'end' => '123131892',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-004'
		),
		'ENSMUST00000131659' => array(
			'start' => '123117447',
			'end' => '123135182',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-002'
		),
		'ENSMUST00000134235' => array(
			'start' => '123117374',
			'end' => '123135180',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Cpne7-003'
		),
		'ENSMUST00000082516' => array(
			'start' => '123103038',
			'end' => '123103123',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'Snord68-201'
		),
		'ENSMUST00000184697' => array(
			'start' => '123104975',
			'end' => '123105043',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7079-201'
		),
		'ENSMUST00000184815' => array(
			'start' => '123130106',
			'end' => '123130172',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir7080-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0006AP_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000030585' => 'ribosomal protein L13',
	'ENSDARG00000037084' => 'copine VII',
	'ENSDARG00000080268' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000084186' => 'Small nucleolar RNA MBII-202',
	'ENSDARG00000085320' => 'Small nucleolar RNA MBII-202',
	'ENSG00000167526' => 'ribosomal protein L13',
	'ENSG00000178773' => 'copine VII',
	'ENSG00000200084' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000000740' => 'ribosomal protein L13',
	'ENSMUSG00000034796' => 'copine VII',
	'ENSMUSG00000064450' => 'small nucleolar RNA, C/D box 68',
	'ENSMUSG00000098550' => 'microRNA 7079',
	'ENSMUSG00000098582' => 'microRNA 7080'
)
$gene_name_arr = array(
	'ENSDARG00000030585' => 'rpl13',
	'ENSDARG00000037084' => 'CPNE7',
	'ENSDARG00000080268' => 'snoMBII-202',
	'ENSDARG00000084186' => 'snoMBII-202',
	'ENSDARG00000085320' => 'snoMBII-202',
	'ENSG00000167526' => 'RPL13',
	'ENSG00000178773' => 'CPNE7',
	'ENSG00000200084' => 'SNORD68',
	'ENSMUSG00000000740' => 'Rpl13',
	'ENSMUSG00000034796' => 'Cpne7',
	'ENSMUSG00000064450' => 'Snord68',
	'ENSMUSG00000098550' => 'Mir7079',
	'ENSMUSG00000098582' => 'Mir7080'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0001',
			'tax_id' => '7955',
			'chromosome' => '7',
			'seq_start' => '69521681',
			'seq_end' => '69648797',
			'region_length' => '127116',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000030585-ENSDARG00000037084'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '89560657',
			'seq_end' => '89597246',
			'region_length' => '36589',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000167526-ENSG00000178773'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0006AP_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '123102350',
			'seq_end' => '123135182',
			'region_length' => '32832',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000000740-ENSMUSG00000034796'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 12 => 'Bladder',
	(int) 14 => 'Brain',
	(int) 21 => 'Breast',
	(int) 30 => 'Colon',
	(int) 34 => 'Heart',
	(int) 42 => 'Kidney',
	(int) 51 => 'Liver',
	(int) 59 => 'Lung',
	(int) 63 => 'Muscle',
	(int) 69 => 'Ovary',
	(int) 81 => 'Placenta',
	(int) 89 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 45
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000047391' => array(
		'start' => '69521681',
		'end' => '69531116',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-001'
	),
	'ENSDART00000149628' => array(
		'start' => '69521721',
		'end' => '69527575',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'rpl13-002'
	),
	'ENSDART00000149670' => array(
		'start' => '69522965',
		'end' => '69527576',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'rpl13-003'
	),
	'ENSDART00000091052' => array(
		'start' => '69548086',
		'end' => '69648039',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-201'
	),
	'ENSDART00000155249' => array(
		'start' => '69540786',
		'end' => '69648797',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENSDART00000118328' => array(
		'start' => '69527371',
		'end' => '69527453',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.1-201'
	),
	'ENSDART00000119586' => array(
		'start' => '69525336',
		'end' => '69525417',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.2-201'
	),
	'ENSDART00000120720' => array(
		'start' => '69530134',
		'end' => '69530210',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'snoMBII-202.3-201'
	),
	'ENST00000311528' => array(
		'start' => '89560657',
		'end' => '89566828',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-001'
	),
	'ENST00000393099' => array(
		'start' => '89560711',
		'end' => '89564542',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-002'
	),
	'ENST00000399461' => array(
		'start' => '89560904',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-003'
	),
	'ENST00000452368' => array(
		'start' => '89560683',
		'end' => '89563952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-015'
	),
	'ENST00000467736' => array(
		'start' => '89560711',
		'end' => '89561710',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-006'
	),
	'ENST00000472354' => array(
		'start' => '89562370',
		'end' => '89563438',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-008'
	),
	'ENST00000484610' => array(
		'start' => '89560679',
		'end' => '89563067',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-004'
	),
	'ENST00000487034' => array(
		'start' => '89560682',
		'end' => '89561523',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-007'
	),
	'ENST00000491523' => array(
		'start' => '89560677',
		'end' => '89562393',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-005'
	),
	'ENST00000562879' => array(
		'start' => '89560682',
		'end' => '89563473',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RPL13-011'
	),
	'ENST00000563270' => array(
		'start' => '89560681',
		'end' => '89563032',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-016'
	),
	'ENST00000563749' => array(
		'start' => '89560677',
		'end' => '89563043',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-010'
	),
	'ENST00000565571' => array(
		'start' => '89560683',
		'end' => '89561849',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-018'
	),
	'ENST00000567815' => array(
		'start' => '89560681',
		'end' => '89563080',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RPL13-009'
	),
	'ENST00000570149' => array(
		'start' => '89562140',
		'end' => '89563066',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RPL13-017'
	),
	'ENST00000268720' => array(
		'start' => '89575768',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-002'
	),
	'ENST00000319518' => array(
		'start' => '89575791',
		'end' => '89597246',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-001'
	),
	'ENST00000525982' => array(
		'start' => '89575782',
		'end' => '89583714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-003'
	),
	'ENST00000526232' => array(
		'start' => '89595576',
		'end' => '89596849',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-006'
	),
	'ENST00000529800' => array(
		'start' => '89587043',
		'end' => '89595423',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'CPNE7-004'
	),
	'ENST00000532500' => array(
		'start' => '89584821',
		'end' => '89587732',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'CPNE7-005'
	),
	'ENST00000564421' => array(
		'start' => '89595770',
		'end' => '89596845',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-009'
	),
	'ENST00000566398' => array(
		'start' => '89594100',
		'end' => '89596859',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'CPNE7-008'
	),
	'ENST00000568977' => array(
		'start' => '89588804',
		'end' => '89596816',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'CPNE7-010'
	),
	'ENST00000363214' => array(
		'start' => '89561434',
		'end' => '89561517',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'SNORD68-201'
	),
	'ENSMUST00000000756' => array(
		'start' => '123102350',
		'end' => '123105244',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rpl13-001'
	),
	'ENSMUST00000129311' => array(
		'start' => '123102653',
		'end' => '123105244',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-002'
	),
	'ENSMUST00000132275' => array(
		'start' => '123102653',
		'end' => '123104464',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-004'
	),
	'ENSMUST00000152444' => array(
		'start' => '123102651',
		'end' => '123103641',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rpl13-003'
	),
	'ENSMUST00000037900' => array(
		'start' => '123117378',
		'end' => '123135182',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Cpne7-001'
	),
	'ENSMUST00000123191' => array(
		'start' => '123126517',
		'end' => '123127373',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Cpne7-005'
	),
	'ENSMUST00000127431' => array(
		'start' => '123128623',
		'end' => '123131892',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-004'
	),
	'ENSMUST00000131659' => array(
		'start' => '123117447',
		'end' => '123135182',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-002'
	),
	'ENSMUST00000134235' => array(
		'start' => '123117374',
		'end' => '123135180',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Cpne7-003'
	),
	'ENSMUST00000082516' => array(
		'start' => '123103038',
		'end' => '123103123',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'Snord68-201'
	),
	'ENSMUST00000184697' => array(
		'start' => '123104975',
		'end' => '123105043',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7079-201'
	),
	'ENSMUST00000184815' => array(
		'start' => '123130106',
		'end' => '123130172',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir7080-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0006AP_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000030585' => array(
				[maximum depth reached]
			),
			'ENSDARG00000037084' => array(
				[maximum depth reached]
			),
			'ENSDARG00000084186' => array(
				[maximum depth reached]
			),
			'ENSDARG00000085320' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Muscle',
			(int) 9 => 'Kidney',
			(int) 10 => 'Brain',
			(int) 11 => 'Heart',
			(int) 12 => 'Kidney',
			(int) 13 => 'Liver',
			(int) 14 => 'Brain',
			(int) 15 => 'Heart',
			(int) 16 => 'Muscle',
			(int) 17 => 'Liver',
			(int) 18 => 'Heart'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0006AP_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '123102350',
		'seq_end' => '123135182',
		'region_length' => '32832',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000000740-ENSMUSG00000034796'
	)
)
$gene_el = array(
	'ENSDART00000120720' => array(
		'Heart' => array(
			'average_FPKM' => '4.550',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSDARG00000085320'
$is_first = false
$tran_el = array(
	'Heart' => array(
		'average_FPKM' => '4.550',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSDART00000120720'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000000740-ENSMUSG00000034796		CGP	10090	8:123102350-123135182
Gene		Transcript	Position	Biotype

Genome

Exciting message

Genes

Connecting

Transcripts

Connecting

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000030585

ENSDART00000047391

N/A

91.047±72.60

N/A

214.622±287.31

16.330±22.35

300.345±0.00

N/A

518.619±0.00

N/A

ENSDART00000149628

N/A

59.146±0.00

N/A

265.736±0.00

0.649±0.00

N/A

190.044±0.00

N/A

ENSDART00000149670

N/A

1.451±0.00

N/A

ENSDARG00000037084

ENSDART00000091052

N/A

0.735±0.00

N/A

0.232±0.08

0.108±0.00

0.023±0.00

N/A

ENSDART00000155249

N/A

1.756±0.00

N/A

0.302±0.00

N/A

0.233±0.00

N/A

ENSDARG00000084186

ENSDART00000119586

N/A

3.583±0.00

N/A

ENSDARG00000085320

ENSDART00000120720

N/A

4.550±0.00

N/A

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Danio rerio Ensembl (Zv9)

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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