C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006BT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014057-ENSDARG00000033489 CGP 7955 20:1181702-1215219
GeneTranscriptPositionBiotype
ENSDARG00000014057 (gabrr2b)
gamma-aminobutyric acid (GABA) A receptor, rho 2b
ENSDART00000023304 (gabrr2b-001) 1181702-1197575 protein_coding
ENSDART00000152255 (gabrr2b-201) 1182044-1195457 protein_coding
ENSDARG00000033489 (ube2j1)
ubiquitin-conjugating enzyme E2, J1
ENSDART00000043218 (ube2j1-001) 1201060-1215219 protein_coding
CIL_0006BT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111886-ENSG00000198833 CGP 9606 6:89257208-89352848
GeneTranscriptPositionBiotype
ENSG00000111886 (GABRR2)
gamma-aminobutyric acid (GABA) A receptor, rho 2
ENST00000402938 (GABRR2-001) 89257520-89315299 protein_coding
ENST00000602432 (GABRR2-002) 89257208-89269353 retained_intron
ENST00000602808 (GABRR2-003) 89270393-89315299 processed_transcript
ENSG00000198833 (UBE2J1)
ubiquitin-conjugating enzyme E2, J1
ENST00000435041 (UBE2J1-001) 89326625-89352848 protein_coding
ENSG00000220418 (TUBB3P1)
tubulin, beta 3 class III pseudogene 1
ENST00000405796 (TUBB3P1-001) 89301783-89303114 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006BT_0001ENSDARG00000014057ENSDART00000023304ENSDART00000152255ENSDARG00000033489ENSDART00000043218CIL_0006BT_0002ENSG00000111886ENST00000402938ENST00000602432ENST00000602808ENSG00000198833ENST00000435041ENSG00000220418ENST00000405796
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006BT_0001ENSDARG00000014057ENSDART00000023304ENSDARG00000033489ENSDART00000043218CIL_0006BT_0002ENSG00000111886ENST00000402938ENST00000602432ENST00000602808ENSG00000198833ENST00000435041ENSG00000220418ENST00000405796
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014057 ENSDART00000023304 N/A N/A N/A 0.145±0.09 N/A N/A 0.057±0.00 0.364±0.00 0.022±0.00 N/A N/A N/A N/A N/A
ENSDART00000152255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000033489 ENSDART00000043218 N/A N/A N/A 4.188±3.25 N/A N/A 3.621±1.15 4.688±2.33 0.937±0.00 N/A 2.782±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111886 ENST00000402938 N/A N/A N/A 0.023±0.00 0.044±0.00 N/A N/A 0.024±0.00 N/A N/A 0.054±0.00 N/A 0.089±0.00 N/A
ENST00000602432 0.047±0.00 0.565±0.00 N/A 0.053±0.00 0.152±0.00 0.168±0.06 0.107±0.02 0.253±0.17 0.062±0.03 0.162±0.07 N/A 0.176±0.06 0.126±0.00 0.157±0.07
ENST00000602808 N/A N/A N/A N/A 0.511±0.00 0.082±0.00 N/A 0.083±0.00 N/A 0.408±0.04 N/A 0.065±0.00 N/A 0.063±0.00
ENSG00000198833 ENST00000435041 11.104±0.00 19.946±0.00 2.816±0.00 7.228±1.91 7.625±0.09 8.471±1.07 2.984±1.98 9.230±5.14 5.027±1.55 9.345±4.44 2.425±1.65 5.065±1.32 6.849±3.41 9.506±3.71
ENSG00000220418 ENST00000405796 0.016±0.00 N/A 0.388±0.00 0.107±0.00 N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A 0.034±0.00

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