C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153253-ENSG00000136531 CGP 9606 2:165087522-165392308
GeneTranscriptPositionBiotype
ENSG00000136531 (SCN2A)
sodium channel, voltage-gated, type II, alpha subunit 		ENST00000283256 (SCN2A-001) 165294031-165392053 protein_coding
ENST00000375427 (SCN2A-002) 165295773-165390029 protein_coding
ENST00000375437 (SCN2A-201) 165239402-165392308 protein_coding
ENST00000424833 (SCN2A-003) 165239402-165315598 protein_coding
ENST00000480032 (SCN2A-005) 165294044-165381003 retained_intron
ENST00000486878 (SCN2A-004) 165308666-165310745 retained_intron
ENSG00000153253 (SCN3A)
sodium channel, voltage-gated, type III, alpha subunit 		ENST00000283254 (SCN3A-001) 165087530-165204043 protein_coding
ENST00000360093 (SCN3A-201) 165087522-165204067 protein_coding
ENST00000409101 (SCN3A-002) 165089718-165203886 protein_coding
ENST00000440431 (SCN3A-004) 165097252-165186554 protein_coding
ENST00000453007 (SCN3A-003) 165164393-165204050 protein_coding
ENST00000465043 (SCN3A-007) 165092256-165093828 processed_transcript
ENST00000471697 (SCN3A-006) 165095511-165097614 retained_intron
ENST00000484898 (SCN3A-008) 165122800-165127792 processed_transcript
ENSG00000233204 (MAPRE1P3)
MAPRE1 pseudogene 3 		ENST00000435438 (MAPRE1P3-001) 165285253-165286048 processed_pseudogene
ENSG00000236283 (AC013463.2)
 ENST00000431341 (AC013463.2-001) 164991984-165091293 antisense
CIL_0006CO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057182-ENSMUSG00000075318 CGP 10090 2:65457118-65767447
GeneTranscriptPositionBiotype
ENSMUSG00000057182 (Scn3a)
sodium channel, voltage-gated, type III, alpha 		ENSMUST00000066432 (Scn3a-201) 65457118-65567492 protein_coding
ENSMUST00000100069 (Scn3a-001) 65458263-65567627 protein_coding
ENSMUST00000126837 (Scn3a-002) 65524748-65529404 protein_coding
ENSMUST00000155838 (Scn3a-003) 65493125-65498599 processed_transcript
ENSMUSG00000075318 (Scn2a1)
sodium channel, voltage-gated, type II, alpha 1 		ENSMUST00000028377 (Scn2a1-001) 65620857-65767447 protein_coding
ENSMUST00000100067 (Scn2a1-201) 65670445-65767447 protein_coding
ENSMUST00000138368 (Scn2a1-003) 65682280-65683866 processed_transcript
ENSMUST00000144254 (Scn2a1-002) 65681048-65683872 protein_coding
ENSMUSG00000086701 (Gm13595)
predicted gene 13595 		ENSMUST00000145994 (Gm13595-001) 65509265-65512605 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CO_0001ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000153253ENST00000283254ENST00000360093ENST00000409101ENST00000440431ENST00000453007ENST00000465043ENST00000471697ENST00000484898ENSG00000233204ENST00000435438ENSG00000236283ENST00000431341CIL_0006CO_0002ENSMUSG00000057182ENSMUST00000066432ENSMUST00000100069ENSMUST00000126837ENSMUST00000155838ENSMUSG00000075318ENSMUST00000028377ENSMUST00000100067ENSMUST00000138368ENSMUST00000144254ENSMUSG00000086701ENSMUST00000145994
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CO_0001ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000153253ENST00000283254ENST00000360093ENST00000409101ENST00000440431ENST00000453007ENST00000465043ENST00000471697ENST00000484898ENSG00000233204ENST00000435438ENSG00000236283ENST00000431341CIL_0006CO_0002ENSMUSG00000057182ENSMUST00000066432ENSMUST00000100069ENSMUST00000126837ENSMUST00000155838ENSMUSG00000075318ENSMUST00000028377ENSMUST00000100067ENSMUST00000138368ENSMUST00000144254ENSMUSG00000086701ENSMUST00000145994
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136531 ENST00000283256 0.004±0.00 0.037±0.00 N/A 12.338±6.01 0.110±0.05 0.048±0.02 0.018±0.00 0.857±0.00 0.089±0.00 0.039±0.01 0.016±0.00 0.380±0.22 0.019±0.00 0.146±0.09
ENST00000375427 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.026±0.00 N/A 0.214±0.00 N/A 0.230±0.00
ENST00000375437 N/A N/A N/A 6.533±1.08 N/A N/A N/A 0.272±0.00 N/A N/A N/A 0.070±0.03 0.067±0.00 0.060±0.00
ENST00000424833 N/A N/A N/A N/A N/A N/A 0.066±0.05 0.289±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480032 N/A N/A N/A N/A 0.078±0.00 N/A 0.030±0.00 N/A 0.034±0.00 N/A N/A 0.155±0.00 0.012±0.00 N/A
ENST00000486878 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A
ENSG00000153253 ENST00000283254 N/A 0.254±0.00 1.005±0.00 2.113±0.60 N/A N/A 0.151±0.00 N/A 0.258±0.25 N/A N/A 0.032±0.02 0.014±0.01 N/A
ENST00000360093 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A
ENST00000409101 N/A N/A N/A 0.623±0.00 0.033±0.00 0.255±0.00 N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.118±0.02
ENST00000440431 0.088±0.00 N/A N/A N/A N/A N/A 0.142±0.00 0.025±0.00 N/A 0.074±0.00 0.361±0.00 0.030±0.00 N/A N/A
ENST00000453007 N/A N/A N/A 2.623±0.00 0.197±0.00 0.466±0.00 N/A N/A N/A N/A 0.706±0.00 0.127±0.00 0.010±0.00 N/A
ENST00000465043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.582±0.00
ENST00000471697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.02 1.315±0.00
ENST00000484898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A
ENSG00000233204 ENST00000435438 N/A N/A 0.675±0.00 N/A N/A N/A N/A 0.386±0.00 N/A N/A N/A 0.224±0.19 N/A 0.031±0.00
ENSG00000236283 ENST00000431341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000057182 ENSMUST00000066432 N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.051±0.00 0.019±0.00 N/A 0.057±0.00 N/A N/A N/A
ENSMUST00000100069 0.051±0.02 0.409±0.21 0.068±0.01 6.049±1.67 0.130±0.06 0.503±0.13 0.280±0.04 0.072±0.02 0.047±0.03 6.684±1.96 0.074±0.03 0.400±0.13 0.015±0.01 0.078±0.04
ENSMUST00000126837 N/A N/A N/A N/A 0.741±0.00 N/A N/A N/A N/A N/A 0.477±0.00 N/A N/A N/A
ENSMUST00000155838 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000075318 ENSMUST00000028377 0.134±0.00 N/A N/A 2.736±1.16 0.165±0.06 0.181±0.02 0.075±0.00 N/A 0.016±0.01 N/A N/A 0.286±0.03 N/A 0.127±0.02
ENSMUST00000100067 0.074±0.00 0.079±0.02 0.403±0.00 7.564±4.52 0.126±0.04 N/A N/A 0.046±0.00 0.021±0.01 N/A 0.105±0.01 0.143±0.08 0.021±0.01 0.020±0.00
ENSMUST00000138368 N/A 0.312±0.00 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.13 N/A
ENSMUSG00000086701 ENSMUST00000145994 N/A N/A N/A 0.267±0.18 N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.204±0.10

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