C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153253-ENSG00000136531 CGP 9606 2:165087522-165392308
GeneTranscriptPositionBiotype
ENSG00000136531 (SCN2A)
sodium channel, voltage-gated, type II, alpha subunit 		ENST00000283256 (SCN2A-001) 165294031-165392053 protein_coding
ENST00000375427 (SCN2A-002) 165295773-165390029 protein_coding
ENST00000375437 (SCN2A-201) 165239402-165392308 protein_coding
ENST00000424833 (SCN2A-003) 165239402-165315598 protein_coding
ENST00000480032 (SCN2A-005) 165294044-165381003 retained_intron
ENST00000486878 (SCN2A-004) 165308666-165310745 retained_intron
ENSG00000153253 (SCN3A)
sodium channel, voltage-gated, type III, alpha subunit 		ENST00000283254 (SCN3A-001) 165087530-165204043 protein_coding
ENST00000360093 (SCN3A-201) 165087522-165204067 protein_coding
ENST00000409101 (SCN3A-002) 165089718-165203886 protein_coding
ENST00000440431 (SCN3A-004) 165097252-165186554 protein_coding
ENST00000453007 (SCN3A-003) 165164393-165204050 protein_coding
ENST00000465043 (SCN3A-007) 165092256-165093828 processed_transcript
ENST00000471697 (SCN3A-006) 165095511-165097614 retained_intron
ENST00000484898 (SCN3A-008) 165122800-165127792 processed_transcript
ENSG00000233204 (MAPRE1P3)
MAPRE1 pseudogene 3 		ENST00000435438 (MAPRE1P3-001) 165285253-165286048 processed_pseudogene
ENSG00000236283 (AC013463.2)
 ENST00000431341 (AC013463.2-001) 164991984-165091293 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0006CO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057182-ENSMUSG00000075318 CGP 10090 2:65457118-65767447
GeneTranscriptPositionBiotype
ENSMUSG00000057182 (Scn3a)
sodium channel, voltage-gated, type III, alpha 		ENSMUST00000066432 (Scn3a-201) 65457118-65567492 protein_coding
ENSMUST00000100069 (Scn3a-001) 65458263-65567627 protein_coding
ENSMUST00000126837 (Scn3a-002) 65524748-65529404 protein_coding
ENSMUST00000155838 (Scn3a-003) 65493125-65498599 processed_transcript
ENSMUSG00000075318 (Scn2a1)
sodium channel, voltage-gated, type II, alpha 1 		ENSMUST00000028377 (Scn2a1-001) 65620857-65767447 protein_coding
ENSMUST00000100067 (Scn2a1-201) 65670445-65767447 protein_coding
ENSMUST00000138368 (Scn2a1-003) 65682280-65683866 processed_transcript
ENSMUST00000144254 (Scn2a1-002) 65681048-65683872 protein_coding
ENSMUSG00000086701 (Gm13595)
predicted gene 13595 		ENSMUST00000145994 (Gm13595-001) 65509265-65512605 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CO_0001ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000153253ENST00000283254ENST00000360093ENST00000409101ENST00000440431ENST00000453007ENST00000465043ENST00000471697ENST00000484898ENSG00000233204ENST00000435438ENSG00000236283ENST00000431341CIL_0006CO_0002ENSMUSG00000057182ENSMUST00000066432ENSMUST00000100069ENSMUST00000126837ENSMUST00000155838ENSMUSG00000075318ENSMUST00000028377ENSMUST00000100067ENSMUST00000138368ENSMUST00000144254ENSMUSG00000086701ENSMUST00000145994
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CO_0001ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000153253ENST00000283254ENST00000360093ENST00000409101ENST00000440431ENST00000453007ENST00000465043ENST00000471697ENST00000484898ENSG00000233204ENST00000435438ENSG00000236283ENST00000431341CIL_0006CO_0002ENSMUSG00000057182ENSMUST00000066432ENSMUST00000100069ENSMUST00000126837ENSMUST00000155838ENSMUSG00000075318ENSMUST00000028377ENSMUST00000100067ENSMUST00000138368ENSMUST00000144254ENSMUSG00000086701ENSMUST00000145994
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136531 ENST00000283256 0.004±0.00 0.037±0.00 N/A 12.338±6.01 0.110±0.05 0.048±0.02 0.018±0.00 0.857±0.00 0.089±0.00 0.039±0.01 0.016±0.00 0.380±0.22 0.019±0.00 0.146±0.09
ENST00000375427 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.026±0.00 N/A 0.214±0.00 N/A 0.230±0.00
ENST00000375437 N/A N/A N/A 6.533±1.08 N/A N/A N/A 0.272±0.00 N/A N/A N/A 0.070±0.03 0.067±0.00 0.060±0.00
ENST00000424833 N/A N/A N/A N/A N/A N/A 0.066±0.05 0.289±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480032 N/A N/A N/A N/A 0.078±0.00 N/A 0.030±0.00 N/A 0.034±0.00 N/A N/A 0.155±0.00 0.012±0.00 N/A
ENST00000486878 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A
ENSG00000153253 ENST00000283254 N/A 0.254±0.00 1.005±0.00 2.113±0.60 N/A N/A 0.151±0.00 N/A 0.258±0.25 N/A N/A 0.032±0.02 0.014±0.01 N/A
ENST00000360093 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A
ENST00000409101 N/A N/A N/A 0.623±0.00 0.033±0.00 0.255±0.00 N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.118±0.02
ENST00000440431 0.088±0.00 N/A N/A N/A N/A N/A 0.142±0.00 0.025±0.00 N/A 0.074±0.00 0.361±0.00 0.030±0.00 N/A N/A
ENST00000453007 N/A N/A N/A 2.623±0.00 0.197±0.00 0.466±0.00 N/A N/A N/A N/A 0.706±0.00 0.127±0.00 0.010±0.00 N/A
ENST00000465043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.582±0.00
ENST00000471697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.02 1.315±0.00
ENST00000484898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A
ENSG00000233204 ENST00000435438 N/A N/A 0.675±0.00 N/A N/A N/A N/A 0.386±0.00 N/A N/A N/A 0.224±0.19 N/A 0.031±0.00
ENSG00000236283 ENST00000431341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000057182 ENSMUST00000066432 N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.051±0.00 0.019±0.00 N/A 0.057±0.00 N/A N/A N/A
ENSMUST00000100069 0.051±0.02 0.409±0.21 0.068±0.01 6.049±1.67 0.130±0.06 0.503±0.13 0.280±0.04 0.072±0.02 0.047±0.03 6.684±1.96 0.074±0.03 0.400±0.13 0.015±0.01 0.078±0.04
ENSMUST00000126837 N/A N/A N/A N/A 0.741±0.00 N/A N/A N/A N/A N/A 0.477±0.00 N/A N/A N/A
ENSMUST00000155838 N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000075318 ENSMUST00000028377 0.134±0.00 N/A N/A 2.736±1.16 0.165±0.06 0.181±0.02 0.075±0.00 N/A 0.016±0.01 N/A N/A 0.286±0.03 N/A 0.127±0.02
ENSMUST00000100067 0.074±0.00 0.079±0.02 0.403±0.00 7.564±4.52 0.126±0.04 N/A N/A 0.046±0.00 0.021±0.01 N/A 0.105±0.01 0.143±0.08 0.021±0.01 0.020±0.00
ENSMUST00000138368 N/A 0.312±0.00 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.13 N/A
ENSMUSG00000086701 ENSMUST00000145994 N/A N/A N/A 0.267±0.18 N/A N/A N/A N/A N/A 0.093±0.00 N/A N/A N/A 0.204±0.10

Loading