C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006ES_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185379-ENSG00000073598 CGP 9606 17:35092208-35130732
GeneTranscriptPositionBiotype
ENSG00000073536 (NLE1)
notchless homolog 1 (Drosophila) 		ENST00000360831 (NLE1-005) 35132071-35142303 protein_coding
ENST00000442241 (NLE1-001) 35131347-35142315 protein_coding
ENST00000586869 (NLE1-004) 35128753-35142284 protein_coding
ENST00000588019 (NLE1-003) 35132244-35137167 protein_coding
ENST00000588642 (NLE1-007) 35137053-35142297 nonsense_mediated_decay
ENST00000589367 (NLE1-002) 35136367-35142304 nonsense_mediated_decay
ENST00000593176 (NLE1-008) 35137024-35142233 processed_transcript
ENSG00000073598 (FNDC8)
fibronectin type III domain containing 8 		ENST00000158009 (FNDC8-001) 35121579-35130732 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0006ES_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000018841-ENSMUSG00000018844 CGP 10090 11:82876434-82900801
GeneTranscriptPositionBiotype
ENSMUSG00000018841 (Rad51d)
RAD51 homolog D 		ENSMUST00000018985 (Rad51d-001) 82876699-82890614 protein_coding
ENSMUST00000021033 (Rad51d-005) 82878737-82890589 protein_coding
ENSMUST00000092844 (Rad51d-003) 82878737-82890589 protein_coding
ENSMUST00000100718 (Rad51d-006) 82878737-82890589 nonsense_mediated_decay
ENSMUST00000135963 (Rad51d-004) 82878737-82890589 nonsense_mediated_decay
ENSMUST00000146053 (Rad51d-002) 82876434-82890589 nonsense_mediated_decay
ENSMUSG00000018844 (Fndc8)
fibronectin type III domain containing 8 		ENSMUST00000018988 (Fndc8-001) 82892124-82900801 protein_coding
ENSMUSG00000020692 (Nle1)
notchless homolog 1 (Drosophila) 		ENSMUST00000103213 (Nle1-001) 82900768-82908411 protein_coding
ENSMUST00000124109 (Nle1-005) 82900772-82901816 retained_intron
ENSMUST00000126202 (Nle1-002) 82904792-82907687 nonsense_mediated_decay
ENSMUST00000140318 (Nle1-004) 82901739-82904268 retained_intron
ENSMUST00000147915 (Nle1-003) 82904922-82908342 retained_intron
ENSMUST00000167196 (Nle1-006) 82900780-82904289 nonsense_mediated_decay
ENSMUST00000170815 (Nle1-007) 82904106-82904636 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006ES_0001ENSG00000073536ENST00000360831ENST00000442241ENST00000586869ENST00000588019ENST00000588642ENST00000589367ENST00000593176ENSG00000073598ENST00000158009CIL_0006ES_0002ENSMUSG00000018841ENSMUST00000018985ENSMUST00000021033ENSMUST00000092844ENSMUST00000100718ENSMUST00000135963ENSMUST00000146053ENSMUSG00000018844ENSMUST00000018988ENSMUSG00000020692ENSMUST00000103213ENSMUST00000124109ENSMUST00000126202ENSMUST00000140318ENSMUST00000147915ENSMUST00000167196ENSMUST00000170815
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006ES_0001ENSG00000073536ENST00000360831ENST00000442241ENST00000586869ENST00000588019ENST00000588642ENST00000589367ENSG00000073598ENST00000158009CIL_0006ES_0002ENSMUSG00000018841ENSMUST00000018985ENSMUST00000021033ENSMUST00000092844ENSMUST00000100718ENSMUST00000135963ENSMUST00000146053ENSMUSG00000018844ENSMUST00000018988ENSMUSG00000020692ENSMUST00000103213ENSMUST00000126202ENSMUST00000140318ENSMUST00000147915ENSMUST00000167196ENSMUST00000170815
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000073536 ENST00000360831 1.671±0.00 N/A N/A N/A 1.564±0.00 1.238±0.99 0.154±0.03 0.272±0.00 1.343±0.00 1.364±0.00 1.971±0.00 3.466±0.48 2.356±0.79 N/A
ENST00000442241 1.892±0.00 3.774±0.00 0.031±0.00 1.177±0.48 2.496±0.00 1.627±0.00 0.344±0.00 2.214±0.00 1.214±0.00 0.812±0.00 2.486±0.00 2.937±1.41 2.420±0.90 N/A
ENST00000586869 N/A N/A N/A 1.130±0.00 N/A 0.622±0.00 0.066±0.00 0.108±0.00 0.351±0.00 0.151±0.00 N/A 1.527±0.22 N/A 1.352±0.00
ENST00000588019 N/A N/A N/A N/A 2.179±0.00 2.174±0.00 N/A N/A 0.920±0.00 0.767±0.00 2.614±0.00 N/A 2.005±0.00 N/A
ENST00000588642 N/A N/A 0.200±0.00 N/A N/A 1.043±0.00 0.862±0.00 1.379±0.00 N/A N/A 2.535±0.00 N/A N/A N/A
ENST00000589367 N/A N/A N/A N/A N/A N/A 0.304±0.00 N/A 1.650±0.00 N/A N/A 1.204±0.00 N/A N/A
ENST00000593176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000073598 ENST00000158009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.362±1.32
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018841 ENSMUST00000018985 8.162±1.58 3.687±0.97 2.639±0.13 1.923±0.20 6.613±1.69 5.153±1.04 2.455±0.11 4.548±1.01 2.303±0.89 3.806±0.71 0.571±0.13 5.484±1.38 1.182±0.54 1.331±0.60
ENSMUST00000021033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.638±0.00 N/A N/A N/A
ENSMUST00000092844 N/A 3.934±0.30 N/A N/A N/A 2.543±0.07 N/A N/A N/A N/A 0.905±0.06 5.201±0.90 2.249±1.22 3.373±0.00
ENSMUST00000100718 6.504±3.40 3.091±0.00 3.572±0.00 4.287±2.97 3.787±0.36 3.453±0.99 2.025±0.42 3.001±0.63 1.699±0.66 2.296±0.56 0.369±0.00 5.990±2.68 3.163±1.56 3.676±1.59
ENSMUST00000135963 N/A N/A N/A 5.540±0.00 N/A 2.669±0.00 N/A N/A 1.060±0.27 N/A 0.978±0.41 5.377±1.20 2.846±1.20 2.478±0.00
ENSMUST00000146053 N/A 1.036±0.00 N/A N/A N/A N/A N/A N/A 0.552±0.00 0.589±0.00 0.259±0.00 1.203±0.01 0.376±0.00 N/A
ENSMUSG00000018844 ENSMUST00000018988 2.582±0.34 N/A N/A N/A 1.017±0.00 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 57.090±23.13
ENSMUSG00000020692 ENSMUST00000103213 8.922±2.00 13.611±0.64 5.842±1.33 14.334±3.99 11.437±3.61 11.420±1.34 3.721±0.69 4.259±0.37 9.113±6.77 6.974±0.55 4.343±0.96 19.512±8.37 4.408±3.51 N/A
ENSMUST00000124109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.433±0.00 N/A
ENSMUST00000140318 N/A N/A 2.496±0.00 N/A 3.605±0.40 N/A 1.284±0.00 1.148±0.00 1.338±0.18 3.538±0.79 1.002±0.17 9.505±0.00 N/A N/A
ENSMUST00000147915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.044±0.00 N/A
ENSMUST00000167196 N/A N/A N/A N/A N/A N/A N/A 2.283±0.37 N/A N/A 1.818±0.16 16.199±0.00 1.024±0.58 N/A
ENSMUST00000170815 N/A N/A N/A N/A 8.800±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

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