C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006FV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000071863-ENSDARG00000071865 CGP 7955 24:1125152-1331189
GeneTranscriptPositionBiotype
ENSDARG00000071863 (itgb1a)
integrin, beta 1a 		ENSDART00000039700 (itgb1a-001) 1125152-1163974 protein_coding
ENSDART00000152023 (itgb1a-201) 1125926-1144446 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006FV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000150093-ENSG00000099250 CGP 9606 10:32900319-33336262
GeneTranscriptPositionBiotype
ENSG00000099250 (NRP1)
neuropilin 1 		ENST00000265371 (NRP1-001) 33177492-33336262 protein_coding
ENST00000374816 (NRP1-201) 33205449-33334522 protein_coding
ENST00000374821 (NRP1-004) 33197621-33334522 protein_coding
ENST00000374822 (NRP1-003) 33197621-33334642 protein_coding
ENST00000374823 (NRP1-005) 33201018-33334382 protein_coding
ENST00000374867 (NRP1-202) 33177494-33334905 protein_coding
ENST00000374875 (NRP1-002) 33177492-33334636 protein_coding
ENST00000395995 (NRP1-203) 33177494-33334905 protein_coding
ENST00000413802 (NRP1-009) 33179897-33185655 protein_coding
ENST00000418675 (NRP1-008) 33194367-33202995 protein_coding
ENST00000431894 (NRP1-007) 33195424-33207625 protein_coding
ENST00000432372 (NRP1-006) 33211410-33335078 protein_coding
ENST00000455749 (NRP1-011) 33249414-33263704 protein_coding
ENST00000466932 (NRP1-010) 33194372-33213561 protein_coding
ENSG00000150093 (ITGB1)
integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 		ENST00000302278 (ITGB1-001) 32900392-32958209 protein_coding
ENST00000396033 (ITGB1-201) 32900319-32957894 protein_coding
ENST00000414670 (ITGB1-002) 32932521-32958196 protein_coding
ENST00000417122 (ITGB1-003) 32929929-32958227 protein_coding
ENST00000423113 (ITGB1-202) 32900319-32935558 protein_coding
ENST00000437302 (ITGB1-006) 32928232-32957794 protein_coding
ENST00000439974 (ITGB1-017) 32958486-32960503 retained_intron
ENST00000464001 (ITGB1-008) 32929932-32932717 retained_intron
ENST00000472147 (ITGB1-013) 32929985-32936251 protein_coding
ENST00000474568 (ITGB1-004) 32928174-32958232 protein_coding
ENST00000475184 (ITGB1-012) 32929824-33005792 protein_coding
ENST00000480226 (ITGB1-009) 32928150-32955663 protein_coding
ENST00000484088 (ITGB1-011) 32925961-32958218 processed_transcript
ENST00000488427 (ITGB1-005) 32900992-32908503 protein_coding
ENST00000488494 (ITGB1-010) 32928193-32958227 protein_coding
ENST00000493758 (ITGB1-007) 32929934-32935558 protein_coding
ENST00000494395 (ITGB1-014) 32901564-32912064 nonsense_mediated_decay
ENST00000528877 (ITGB1-015) 32929885-32963283 protein_coding
ENST00000534049 (ITGB1-016) 32928212-32992463 protein_coding
ENSG00000228816 (AK3P5)
adenylate kinase 3 pseudogene 5 		ENST00000432033 (AK3P5-001) 32944481-32944999 processed_pseudogene
ENSG00000233387 (RP11-342D11.3)
 ENST00000414308 (RP11-342D11.3-001) 33096257-33116672 lincRNA
ENSG00000235962 (RP11-462L8.2)
 ENST00000468834 (RP11-462L8.2-001) 33057615-33058407 processed_pseudogene
ENSG00000238258 (RP11-342D11.2)
 ENST00000451530 (RP11-342D11.2-001) 33211277-33213804 antisense
ENSG00000244356 (RN7SL398P)
RNA, 7SL, cytoplasmic 398, pseudogene 		ENST00000470244 (RN7SL398P-201) 33288304-33288601 misc_RNA
ENSG00000263576 (AL121748.1)
 ENST00000578452 (AL121748.1-201) 33098535-33098636 miRNA
ENSG00000265319 (RN7SL847P)
RNA, 7SL, cytoplasmic 847, pseudogene 		ENST00000582819 (RN7SL847P-201) 33034655-33034924 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FV_0001ENSDARG00000071863ENSDART00000039700ENSDART00000152023CIL_0006FV_0002ENSG00000099250ENST00000265371ENST00000374816ENST00000374821ENST00000374822ENST00000374823ENST00000374867ENST00000374875ENST00000395995ENST00000413802ENST00000418675ENST00000431894ENST00000432372ENST00000455749ENST00000466932ENSG00000150093ENST00000302278ENST00000396033ENST00000414670ENST00000417122ENST00000423113ENST00000437302ENST00000439974ENST00000464001ENST00000472147ENST00000474568ENST00000475184ENST00000480226ENST00000484088ENST00000488427ENST00000488494ENST00000493758ENST00000494395ENST00000528877ENST00000534049ENSG00000228816ENST00000432033ENSG00000233387ENST00000414308ENSG00000235962ENST00000468834ENSG00000238258ENST00000451530ENSG00000244356ENST00000470244ENSG00000263576ENST00000578452ENSG00000265319ENST00000582819
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FV_0001ENSDARG00000071863ENSDART00000039700ENSDART00000152023CIL_0006FV_0002ENSG00000099250ENST00000265371ENST00000374867ENST00000374875ENST00000395995ENST00000413802ENSG00000150093ENST00000302278ENST00000396033ENST00000423113ENSG00000228816ENST00000432033ENSG00000233387ENST00000414308ENSG00000235962ENST00000468834ENSG00000238258ENST00000451530ENSG00000244356ENST00000470244ENSG00000263576ENST00000578452ENSG00000265319ENST00000582819
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000071863 ENSDART00000039700 N/A N/A N/A 3.371±0.00 N/A N/A 2.107±0.23 2.068±0.14 0.901±0.00 N/A N/A N/A N/A N/A
ENSDART00000152023 N/A N/A N/A N/A N/A N/A N/A N/A 1.351±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099250 ENST00000265371 N/A N/A N/A 1.705±0.00 N/A N/A 1.781±0.00 N/A N/A 8.824±0.00 N/A N/A N/A N/A
ENST00000374816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374867 36.961±0.00 12.116±0.00 3.563±0.00 N/A 12.470±5.01 3.986±2.57 5.650±2.30 4.664±1.93 5.809±1.56 6.317±0.00 1.384±0.44 8.003±6.54 17.346±6.72 2.149±1.37
ENST00000374875 36.031±0.00 22.294±0.00 4.199±0.00 1.526±1.02 15.443±10.04 10.733±7.48 3.927±0.46 10.658±8.49 3.494±1.19 18.791±0.00 3.038±0.00 5.585±4.31 15.473±1.67 7.249±6.20
ENST00000395995 N/A N/A N/A N/A 3.005±0.00 12.693±0.00 N/A 8.921±0.00 N/A N/A 2.018±0.00 N/A 10.653±0.00 2.107±1.35
ENST00000413802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.582±0.00 62.823±0.00 5.699±0.00
ENST00000418675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000150093 ENST00000302278 143.957±0.00 72.924±0.00 24.820±0.00 15.904±7.67 143.425±47.25 103.076±46.49 28.691±11.07 56.586±14.18 70.966±7.44 125.948±60.18 9.993±0.37 51.821±19.55 64.708±19.23 64.603±28.85
ENST00000396033 19.876±0.00 43.321±0.00 N/A 4.425±0.00 75.666±0.00 40.224±0.00 N/A 24.937±0.00 11.169±3.40 N/A N/A 38.660±29.16 99.414±26.01 47.681±0.00
ENST00000414670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423113 N/A N/A N/A N/A N/A N/A 21.335±2.59 N/A N/A N/A 26.409±0.00 N/A N/A N/A
ENST00000437302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474568 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228816 ENST00000432033 N/A 0.284±0.00 1.985±0.00 0.090±0.00 1.585±1.33 1.241±0.00 0.077±0.00 0.029±0.00 0.879±0.00 1.001±0.97 0.644±0.62 2.061±1.99 0.141±0.00 0.051±0.00
ENSG00000233387 ENST00000414308 N/A 0.220±0.00 N/A N/A N/A N/A N/A N/A N/A 0.512±0.00 N/A N/A N/A 0.393±0.00
ENSG00000235962 ENST00000468834 0.115±0.00 0.221±0.00 N/A 0.055±0.00 0.078±0.00 0.024±0.00 0.137±0.00 0.153±0.00 0.022±0.00 0.050±0.00 0.194±0.00 0.089±0.00 N/A 0.156±0.00
ENSG00000238258 ENST00000451530 N/A N/A 23.966±0.00 N/A N/A 10.284±0.00 N/A 16.635±0.00 23.507±0.00 47.407±0.00 N/A 14.677±0.00 N/A N/A
ENSG00000244356 ENST00000470244 0.508±0.00 0.120±0.00 N/A 0.456±0.00 0.594±0.09 0.229±0.00 0.225±0.06 0.269±0.02 N/A 0.059±0.00 N/A N/A N/A 0.220±0.00
ENSG00000263576 ENST00000578452 0.164±0.00 0.139±0.00 N/A N/A 0.359±0.00 0.211±0.00 0.273±0.00 0.247±0.00 N/A 0.199±0.00 0.756±0.00 N/A N/A 0.134±0.00
ENSG00000265319 ENST00000582819 N/A 0.409±0.00 N/A 0.640±0.00 0.345±0.00 0.235±0.00 0.077±0.00 0.173±0.00 0.626±0.00 0.863±0.00 0.074±0.00 1.547±0.00 N/A 0.284±0.16

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