C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006GY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000012248-ENSDARG00000060687 CGP 7955 18:24703309-24772356
GeneTranscriptPositionBiotype
ENSDARG00000012248 (rgma)
RGM domain family, member A
ENSDART00000008638 (rgma-001) 24703309-24715755 protein_coding
ENSDART00000122789 (rgma-201) 24705820-24715755 protein_coding
ENSDARG00000060687 (chd2)
chromodomain helicase DNA binding protein 2
ENSDART00000085735 (chd2-001) 24722387-24772356 protein_coding
ENSDART00000127730 (chd2-201) 24717169-24772356 protein_coding
ENSDART00000136434 (chd2-002) 24764579-24772340 protein_coding
CIL_0006GY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000070509-ENSMUSG00000078671 CGP 10090 7:73375520-73541746
GeneTranscriptPositionBiotype
ENSMUSG00000070509 (Rgma)
repulsive guidance molecule family member A
ENSMUST00000094312 (Rgma-001) 73375520-73419899 protein_coding
ENSMUST00000119206 (Rgma-002) 73375520-73419899 protein_coding
ENSMUST00000128471 (Rgma-004) 73391160-73409451 protein_coding
ENSMUST00000139780 (Rgma-003) 73391227-73419899 processed_transcript
ENSMUSG00000078671 (Chd2)
chromodomain helicase DNA binding protein 2
ENSMUST00000026895 (Chd2-005) 73501920-73519588 protein_coding
ENSMUST00000038366 (Chd2-004) 73451813-73461733 processed_transcript
ENSMUST00000169922 (Chd2-001) 73426691-73541746 protein_coding
ENSMUST00000172704 (Chd2-002) 73519523-73537621 protein_coding
ENSMUST00000173785 (Chd2-003) 73429988-73447233 protein_coding
ENSMUST00000181971 (Chd2-007) 73454328-73455592 nonsense_mediated_decay
ENSMUSG00000097756 (A730056A06Rik)
RIKEN cDNA A730056A06 gene
ENSMUST00000181299 (A730056A06Rik-201) 73314003-73375739 lincRNA
ENSMUSG00000098496 (1810026B05Rik)
RIKEN cDNA 1810026B05 gene
ENSMUST00000184587 (1810026B05Rik-001) 73539801-73558395 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GY_0001ENSDARG00000012248ENSDART00000008638ENSDART00000122789ENSDARG00000060687ENSDART00000085735ENSDART00000127730ENSDART00000136434CIL_0006GY_0002ENSMUSG00000070509ENSMUST00000094312ENSMUST00000119206ENSMUST00000128471ENSMUST00000139780ENSMUSG00000078671ENSMUST00000026895ENSMUST00000038366ENSMUST00000169922ENSMUST00000172704ENSMUST00000173785ENSMUST00000181971ENSMUSG00000097756ENSMUST00000181299ENSMUSG00000098496ENSMUST00000184587
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GY_0001ENSDARG00000012248ENSDART00000008638ENSDART00000122789ENSDARG00000060687ENSDART00000085735ENSDART00000127730CIL_0006GY_0002ENSMUSG00000070509ENSMUST00000094312ENSMUST00000119206ENSMUST00000128471ENSMUST00000139780ENSMUSG00000078671ENSMUST00000026895ENSMUST00000169922ENSMUSG00000097756ENSMUST00000181299ENSMUSG00000098496ENSMUST00000184587
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012248 ENSDART00000008638 N/A N/A N/A 23.508±4.41 N/A N/A N/A 0.316±0.00 N/A N/A 0.834±0.00 N/A N/A N/A
ENSDART00000122789 N/A N/A N/A 10.971±2.22 N/A N/A 1.135±0.71 0.612±0.31 0.041±0.00 N/A 0.784±0.00 N/A N/A N/A
ENSDARG00000060687 ENSDART00000085735 N/A N/A N/A 2.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000127730 N/A N/A N/A 6.398±4.12 N/A N/A 8.271±1.75 5.993±0.00 0.161±0.00 N/A N/A N/A N/A N/A
ENSDART00000136434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000070509 ENSMUST00000094312 8.675±4.08 1.044±0.18 2.725±0.00 15.556±10.63 5.292±2.26 4.882±0.76 3.620±0.29 0.284±0.01 0.052±0.03 1.587±0.34 1.634±0.67 10.527±3.97 1.083±0.59 1.260±0.62
ENSMUST00000119206 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.812±0.00 0.354±0.00
ENSMUST00000128471 N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A N/A N/A N/A N/A
ENSMUST00000139780 11.849±0.67 4.464±0.69 2.288±0.37 9.285±5.90 7.525±3.78 2.645±0.94 4.132±1.29 2.418±0.24 0.086±0.05 6.794±0.41 5.474±2.57 5.356±2.35 1.508±1.17 2.253±0.39
ENSMUSG00000078671 ENSMUST00000026895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.625±0.00
ENSMUST00000038366 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169922 2.365±0.77 4.733±2.31 4.802±1.90 6.545±2.59 2.513±0.64 5.207±2.67 1.812±0.18 2.370±0.25 2.371±1.18 4.338±0.28 3.021±0.42 5.660±4.01 8.390±1.85 1.512±0.00
ENSMUST00000172704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000181971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097756 ENSMUST00000181299 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A 0.078±0.00
ENSMUSG00000098496 ENSMUST00000184587 N/A N/A 3.212±0.31 4.713±1.13 N/A N/A N/A N/A 2.626±0.36 N/A N/A 2.707±0.00 N/A N/A

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