C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006KK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171150-ENSG00000180398 CGP 9606 2:46698952-46941855
GeneTranscriptPositionBiotype
ENSG00000068724 (TTC7A)
tetratricopeptide repeat domain 7A 		ENST00000319190 (TTC7A-001) 46941174-47076135 protein_coding
ENST00000394850 (TTC7A-002) 46941286-47075324 protein_coding
ENST00000409245 (TTC7A-005) 46916157-47074048 protein_coding
ENST00000409825 (TTC7A-006) 46950421-47076137 nonsense_mediated_decay
ENST00000440051 (TTC7A-010) 47005932-47049980 nonsense_mediated_decay
ENST00000441914 (TTC7A-004) 46941543-47073923 nonsense_mediated_decay
ENST00000461601 (TTC7A-003) 46941275-47050025 processed_transcript
ENST00000474321 (TTC7A-009) 46978118-47005994 processed_transcript
ENST00000484061 (TTC7A-008) 46994231-47075324 retained_intron
ENST00000484337 (TTC7A-011) 47034155-47060956 processed_transcript
ENST00000491786 (TTC7A-007) 46978740-47075557 retained_intron
ENST00000496991 (TTC7A-012) 47046315-47050827 processed_transcript
ENSG00000171150 (SOCS5)
suppressor of cytokine signaling 5 		ENST00000306503 (SOCS5-001) 46698952-46763129 protein_coding
ENST00000394861 (SOCS5-002) 46699187-46762313 protein_coding
ENSG00000180398 (MCFD2)
multiple coagulation factor deficiency 2 		ENST00000319466 (MCFD2-001) 46901874-46915868 protein_coding
ENST00000409105 (MCFD2-002) 46901874-46915780 protein_coding
ENST00000409147 (MCFD2-010) 46905368-46941855 protein_coding
ENST00000409207 (MCFD2-003) 46904958-46941732 protein_coding
ENST00000409218 (MCFD2-005) 46905394-46916112 protein_coding
ENST00000409800 (MCFD2-008) 46901874-46916054 protein_coding
ENST00000409913 (MCFD2-009) 46901874-46915816 protein_coding
ENST00000409973 (MCFD2-004) 46905271-46915810 protein_coding
ENST00000412438 (MCFD2-006) 46905466-46914118 protein_coding
ENST00000417180 (MCFD2-007) 46907935-46914074 protein_coding
ENST00000434262 (MCFD2-011) 46905817-46909072 protein_coding
ENST00000444761 (MCFD2-201) 46901870-46941855 protein_coding
ENST00000470873 (MCFD2-015) 46905245-46941773 processed_transcript
ENST00000477791 (MCFD2-014) 46907529-46915791 retained_intron
ENST00000479225 (MCFD2-012) 46907700-46941714 retained_intron
ENST00000487121 (MCFD2-013) 46908707-46941727 retained_intron
ENST00000493804 (MCFD2-016) 46904855-46915789 processed_transcript
ENSG00000222005 (LINC01118)
long intergenic non-protein coding RNA 1118 		ENST00000409518 (LINC01118-002) 46816688-46822657 lincRNA
ENST00000409912 (LINC01118-001) 46816683-46822655 lincRNA
ENST00000479311 (LINC01118-003) 46816668-46819458 lincRNA
ENSG00000226548 (AC016722.3)
 ENST00000453936 (AC016722.3-001) 46852020-46853496 lincRNA
ENSG00000239332 (LINC01119)
long intergenic non-protein coding RNA 1119 		ENST00000422294 (LINC01119-004) 46816697-46858210 lincRNA
ENST00000468141 (LINC01119-002) 46845876-46859006 lincRNA
ENST00000490950 (LINC01119-001) 46827864-46859007 lincRNA
ENST00000495449 (LINC01119-003) 46855688-46858579 lincRNA
ENSG00000260977 (RP11-333I13.1)
 ENST00000568862 (RP11-333I13.1-001) 46777783-46780245 lincRNA
CIL_0006KK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037104-ENSMUSG00000024150 CGP 10090 17:87107679-87265935
GeneTranscriptPositionBiotype
ENSMUSG00000024150 (Mcfd2)
multiple coagulation factor deficiency 2 		ENSMUST00000024963 (Mcfd2-001) 87254658-87265935 protein_coding
ENSMUST00000129616 (Mcfd2-005) 87255788-87265880 protein_coding
ENSMUST00000139258 (Mcfd2-006) 87258783-87265863 processed_transcript
ENSMUST00000144236 (Mcfd2-002) 87254660-87265904 protein_coding
ENSMUST00000145895 (Mcfd2-007) 87256758-87265874 protein_coding
ENSMUST00000151155 (Mcfd2-003) 87255970-87265895 protein_coding
ENSMUST00000155904 (Mcfd2-004) 87257231-87265880 protein_coding
ENSMUSG00000037104 (Socs5)
suppressor of cytokine signaling 5 		ENSMUST00000041369 (Socs5-201) 87107679-87137583 protein_coding
ENSMUSG00000095035 (Gm22346)
predicted gene, 22346 		ENSMUST00000116918 (Gm22346-201) 87184105-87184225 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006KK_0001ENSG00000068724ENST00000319190ENST00000394850ENST00000461601ENSG00000171150ENST00000306503ENST00000394861ENSG00000180398ENST00000319466ENST00000409800ENST00000409913ENSG00000222005ENST00000409518ENST00000409912ENST00000479311ENSG00000226548ENST00000453936ENSG00000239332ENST00000422294ENST00000468141ENST00000490950ENST00000495449ENSG00000260977ENST00000568862CIL_0006KK_0002ENSMUSG00000024150ENSMUST00000024963ENSMUST00000129616ENSMUST00000139258ENSMUST00000144236ENSMUST00000151155ENSMUSG00000037104ENSMUST00000041369ENSMUSG00000095035ENSMUST00000116918
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000068724 ENST00000319190 N/A 8.658±0.00 N/A N/A N/A N/A N/A 8.315±0.00 N/A 11.974±0.00 N/A 9.545±0.00 8.417±1.80 13.309±0.00
ENST00000394850 N/A N/A 2.459±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.494±0.00
ENST00000474321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171150 ENST00000306503 N/A 2.366±0.00 N/A 0.616±0.00 2.009±0.10 0.355±0.00 0.790±0.00 0.249±0.00 N/A 1.480±0.00 N/A 2.670±1.45 1.037±0.46 1.413±0.62
ENST00000394861 2.931±0.00 2.772±0.00 0.956±0.00 3.657±0.62 2.440±0.40 3.250±0.10 1.765±0.34 1.009±0.08 2.409±1.74 2.030±0.37 1.483±0.39 3.727±0.89 1.774±0.57 3.987±1.91
ENSG00000180398 ENST00000319466 24.323±0.00 21.245±0.00 N/A 12.480±6.33 18.422±6.50 13.419±6.02 5.089±1.66 18.139±0.53 20.663±12.54 17.075±8.49 16.699±0.00 21.278±11.16 27.125±3.47 23.560±9.27
ENST00000409105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.381±0.00 N/A N/A N/A
ENST00000409913 N/A N/A N/A 7.322±1.62 N/A N/A 5.839±4.14 N/A 3.803±1.50 5.676±0.00 5.274±0.00 8.829±3.92 N/A N/A
ENST00000409973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222005 ENST00000409518 N/A N/A N/A N/A 0.111±0.00 N/A 0.091±0.00 N/A N/A 0.268±0.00 0.258±0.00 0.289±0.00 2.562±2.63 N/A
ENST00000409912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A
ENST00000479311 N/A 0.148±0.00 N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A 0.098±0.08 N/A N/A
ENSG00000226548 ENST00000453936 0.068±0.00 0.406±0.00 N/A 0.097±0.00 0.111±0.00 0.041±0.00 0.043±0.00 0.201±0.00 0.019±0.00 0.156±0.00 0.040±0.00 0.037±0.00 0.084±0.00 0.042±0.00
ENSG00000239332 ENST00000422294 N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 N/A N/A 0.424±0.00 N/A N/A N/A
ENST00000468141 0.072±0.00 0.098±0.00 N/A 0.091±0.00 0.081±0.00 N/A N/A 0.097±0.00 N/A 0.057±0.00 0.071±0.00 0.120±0.08 N/A 0.078±0.00
ENST00000490950 N/A 0.652±0.00 N/A 0.545±0.00 0.279±0.00 0.334±0.00 0.135±0.00 N/A 0.541±0.00 0.129±0.00 N/A 0.732±0.36 0.496±0.00 0.033±0.00
ENST00000495449 N/A N/A N/A N/A N/A N/A N/A 0.057±0.00 0.151±0.00 N/A N/A 0.197±0.08 N/A 0.114±0.02
ENSG00000260977 ENST00000568862 0.109±0.00 0.605±0.00 0.108±0.00 0.288±0.02 0.215±0.08 0.205±0.13 0.373±0.08 0.071±0.00 0.239±0.20 0.328±0.00 0.201±0.02 0.303±0.21 0.021±0.00 0.272±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024150 ENSMUST00000024963 33.084±5.28 66.836±5.38 36.816±3.41 13.286±1.63 26.885±6.67 37.996±3.50 15.936±4.47 42.009±7.26 61.769±27.19 31.625±7.14 10.987±2.64 48.094±14.10 37.763±24.26 9.472±2.25
ENSMUST00000129616 N/A N/A N/A 17.948±0.00 N/A N/A 6.291±0.00 N/A N/A N/A N/A 22.147±3.70 N/A 7.104±0.66
ENSMUST00000139258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.645±0.00
ENSMUST00000144236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.503±0.16 7.708±0.00 N/A N/A
ENSMUST00000145895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151155 N/A 39.863±4.84 N/A N/A N/A N/A N/A N/A 37.639±0.00 N/A N/A 24.087±0.14 N/A N/A
ENSMUST00000155904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037104 ENSMUST00000041369 1.071±0.05 12.820±1.16 N/A 4.501±0.31 5.176±2.52 4.598±0.10 4.867±1.36 6.416±0.00 0.781±0.50 6.261±4.84 1.536±0.85 7.982±3.12 0.474±0.04 0.569±0.01
ENSMUSG00000095035 ENSMUST00000116918 N/A N/A 6.970±0.00 3.816±0.00 N/A N/A N/A N/A 1.683±0.00 N/A N/A N/A N/A N/A

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