C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006L2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056043-ENSDARG00000005872 CGP 7955 24:43450377-43591420
GeneTranscriptPositionBiotype
ENSDARG00000005872 (arhgap28)
Rho GTPase activating protein 28 		ENSDART00000125591 (arhgap28-201) 43551498-43591420 protein_coding
ENSDARG00000056043 (lama1)
laminin, alpha 1 		ENSDART00000078414 (lama1-201) 43450377-43542686 protein_coding
ENSDART00000108598 (lama1-202) 43450377-43542737 protein_coding
ENSDART00000154450 (lama1-001) 43537658-43542769 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006L2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032796-ENSMUSG00000024043 CGP 10090 17:67697265-68004120
GeneTranscriptPositionBiotype
ENSMUSG00000024043 (Arhgap28)
Rho GTPase activating protein 28 		ENSMUST00000024840 (Arhgap28-001) 67842713-68004120 protein_coding
ENSMUST00000163865 (Arhgap28-006) 67845735-67901471 protein_coding
ENSMUST00000164647 (Arhgap28-003) 67845110-67950940 protein_coding
ENSMUST00000170581 (Arhgap28-004) 67868963-67896110 protein_coding
ENSMUST00000170813 (Arhgap28-005) 67857417-67873048 nonsense_mediated_decay
ENSMUSG00000032796 (Lama1)
laminin, alpha 1 		ENSMUST00000035471 (Lama1-201) 67697265-67822645 protein_coding
ENSMUSG00000090955 (Gm17097)
predicted gene 17097 		ENSMUST00000166414 (Gm17097-001) 67850126-67851063 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006L2_0001ENSDARG00000005872ENSDART00000125591ENSDARG00000056043ENSDART00000078414ENSDART00000108598ENSDART00000154450CIL_0006L2_0002ENSMUSG00000024043ENSMUST00000024840ENSMUST00000163865ENSMUST00000164647ENSMUST00000170581ENSMUST00000170813ENSMUSG00000032796ENSMUST00000035471ENSMUSG00000090955ENSMUST00000166414
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006L2_0001ENSDARG00000005872ENSDART00000125591ENSDARG00000056043ENSDART00000078414ENSDART00000108598CIL_0006L2_0002ENSMUSG00000024043ENSMUST00000024840ENSMUST00000163865ENSMUST00000164647ENSMUST00000170581ENSMUSG00000032796ENSMUST00000035471ENSMUSG00000090955ENSMUST00000166414
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005872 ENSDART00000125591 N/A N/A N/A 1.775±0.68 N/A N/A 6.024±1.57 5.890±1.91 0.239±0.00 N/A 0.594±0.00 N/A N/A N/A
ENSDARG00000056043 ENSDART00000078414 N/A N/A N/A 0.428±0.00 N/A N/A 0.353±0.24 N/A 0.063±0.00 N/A N/A N/A N/A N/A
ENSDART00000108598 N/A N/A N/A 0.975±0.76 N/A N/A N/A N/A N/A N/A 0.243±0.00 N/A N/A N/A
ENSDART00000154450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024043 ENSMUST00000024840 3.808±2.73 5.204±3.75 3.209±0.91 1.595±1.28 1.635±0.56 1.277±0.26 0.899±0.17 1.542±0.35 0.306±0.23 5.073±0.61 0.111±0.02 12.725±6.08 4.346±1.52 0.286±0.15
ENSMUST00000163865 N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A 9.145±0.00 4.701±0.81 0.073±0.00
ENSMUST00000164647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A
ENSMUST00000170581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.260±0.00
ENSMUST00000170813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032796 ENSMUST00000035471 0.174±0.17 1.582±0.27 0.159±0.02 2.139±1.33 0.452±0.12 0.284±0.11 0.008±0.00 1.486±0.73 0.564±0.18 0.141±0.05 0.004±0.00 22.316±5.02 28.813±17.65 1.227±0.43
ENSMUSG00000090955 ENSMUST00000166414 0.147±0.04 0.234±0.12 0.315±0.04 0.075±0.04 0.142±0.05 0.255±0.16 0.107±0.04 0.105±0.08 0.034±0.02 0.203±0.12 0.078±0.00 1.304±0.67 0.235±0.08 N/A

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