C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006LY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000235608-ENSG00000174137 CGP 9606 4:1402932-1684302
GeneTranscriptPositionBiotype
ENSG00000174137 (FAM53A)
family with sequence similarity 53, member A 		ENST00000308132 (FAM53A-201) 1639881-1684261 protein_coding
ENST00000461064 (FAM53A-002) 1640495-1668905 protein_coding
ENST00000463238 (FAM53A-006) 1655536-1684302 protein_coding
ENST00000467215 (FAM53A-005) 1641562-1644953 retained_intron
ENST00000472884 (FAM53A-007) 1640602-1683991 protein_coding
ENST00000489029 (FAM53A-004) 1617915-1655408 protein_coding
ENST00000489363 (FAM53A-001) 1640466-1684127 protein_coding
ENSG00000207009 (Y_RNA)
Y RNA 		ENST00000384282 (Y_RNA.1-666) 1683420-1683529 misc_RNA
ENSG00000235608 (NKX1-1)
NK1 homeobox 1 		ENST00000422806 (NKX1-1-001) 1402932-1406331 protein_coding
ENSG00000244459 (RP11-1398P2.1)
 ENST00000466692 (RP11-1398P2.1-001) 1574062-1580253 lincRNA
ENSG00000272783 (RP13-1016M1.2)
 ENST00000608161 (RP13-1016M1.2-001) 1550284-1550572 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0006LY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029112-ENSMUSG00000037339 CGP 10090 5:33430734-33629635
GeneTranscriptPositionBiotype
ENSMUSG00000029112 (Nkx1-1)
NK1 transcription factor related, locus 1 (Drosophila) 		ENSMUST00000173348 (Nkx1-1-001) 33430734-33433976 protein_coding
ENSMUSG00000037339 (Fam53a)
family with sequence similarity 53, member A 		ENSMUST00000045329 (Fam53a-002) 33600356-33629622 protein_coding
ENSMUST00000065119 (Fam53a-001) 33600351-33629635 protein_coding
ENSMUST00000065162 (Fam53a-006) 33600356-33628912 protein_coding
ENSMUST00000137705 (Fam53a-005) 33608215-33629583 nonsense_mediated_decay
ENSMUST00000140043 (Fam53a-008) 33614815-33629605 processed_transcript
ENSMUST00000150033 (Fam53a-003) 33600356-33629588 nonsense_mediated_decay
ENSMUST00000153696 (Fam53a-004) 33608388-33629599 protein_coding
ENSMUST00000155980 (Fam53a-007) 33610460-33629062 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LY_0001ENSG00000174137ENST00000308132ENST00000461064ENST00000463238ENST00000467215ENST00000472884ENST00000489029ENST00000489363ENSG00000207009ENST00000384282ENSG00000235608ENST00000422806ENSG00000244459ENST00000466692ENSG00000272783ENST00000608161CIL_0006LY_0002ENSMUSG00000029112ENSMUST00000173348ENSMUSG00000037339ENSMUST00000045329ENSMUST00000065119ENSMUST00000065162ENSMUST00000137705ENSMUST00000140043ENSMUST00000150033ENSMUST00000153696ENSMUST00000155980
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LY_0001ENSG00000174137ENST00000308132ENST00000461064ENST00000463238ENST00000467215ENST00000472884ENST00000489029ENST00000489363ENSG00000207009ENST00000384282ENSG00000235608ENST00000422806ENSG00000244459ENST00000466692ENSG00000272783ENST00000608161CIL_0006LY_0002ENSMUSG00000029112ENSMUST00000173348ENSMUSG00000037339ENSMUST00000045329ENSMUST00000065119ENSMUST00000065162ENSMUST00000140043ENSMUST00000150033
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174137 ENST00000308132 0.103±0.00 0.085±0.00 N/A N/A 0.027±0.00 N/A N/A 0.058±0.00 0.081±0.00 N/A N/A 0.107±0.00 N/A N/A
ENST00000461064 0.139±0.00 0.271±0.00 N/A 0.030±0.00 0.177±0.00 0.017±0.00 0.051±0.00 N/A 0.287±0.00 0.238±0.00 N/A 0.772±0.53 0.187±0.00 11.802±0.00
ENST00000463238 N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A 0.120±0.00 N/A 0.108±0.00 N/A
ENST00000467215 N/A N/A 0.126±0.00 0.100±0.00 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472884 0.212±0.00 N/A N/A 0.218±0.19 0.463±0.00 0.018±0.00 0.146±0.00 0.229±0.00 0.288±0.00 0.196±0.00 0.309±0.00 0.379±0.00 0.168±0.00 1.655±0.00
ENST00000489029 N/A 0.219±0.00 N/A N/A N/A 0.321±0.00 N/A N/A N/A 0.219±0.00 N/A 0.559±0.00 0.183±0.00 N/A
ENST00000489363 N/A N/A N/A 0.063±0.00 N/A 0.217±0.00 0.068±0.00 0.067±0.00 0.098±0.00 N/A N/A N/A N/A 2.997±0.32
ENSG00000207009 ENST00000384282 0.565±0.00 N/A N/A N/A 0.567±0.00 N/A N/A N/A N/A N/A 1.302±0.00 N/A N/A N/A
ENSG00000235608 ENST00000422806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.339±1.21
ENSG00000244459 ENST00000466692 1.692±0.00 1.871±0.00 N/A 0.097±0.00 2.297±0.00 3.505±0.00 0.365±0.00 0.626±0.00 0.524±0.00 1.598±0.00 N/A 1.871±0.30 0.720±0.46 1.538±0.43
ENSG00000272783 ENST00000608161 1.247±0.00 N/A N/A 0.226±0.00 0.309±0.00 0.176±0.00 0.906±0.18 0.384±0.00 N/A 2.247±0.00 N/A N/A N/A 0.178±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029112 ENSMUST00000173348 N/A N/A N/A 0.949±0.07 N/A 0.018±0.00 N/A 0.028±0.00 0.008±0.00 N/A N/A 0.039±0.01 0.282±0.23 0.232±0.11
ENSMUSG00000037339 ENSMUST00000045329 3.501±0.04 4.028±0.37 2.018±0.14 2.940±1.57 4.506±1.62 2.885±0.54 1.400±0.05 1.379±0.13 2.162±0.96 3.135±0.41 N/A 9.906±2.67 3.352±2.01 2.328±1.08
ENSMUST00000065119 6.612±1.49 13.922±5.80 5.134±0.23 3.909±2.59 10.823±1.65 11.204±4.33 5.075±1.73 6.832±0.69 4.704±1.85 7.943±0.80 25.303±1.72 21.093±7.27 7.472±4.02 5.228±0.85
ENSMUST00000065162 1.837±0.71 2.134±0.21 1.814±0.11 0.817±0.21 2.760±0.25 1.838±0.20 1.127±0.12 0.862±0.15 0.843±0.36 2.541±0.11 1.276±0.14 5.240±1.27 0.497±0.16 0.738±0.34
ENSMUST00000137705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140043 N/A 21.068±3.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.276±0.00 N/A N/A
ENSMUST00000150033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.025±0.00
ENSMUST00000153696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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