C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006R6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129317-ENSG00000198001 CGP 9606 12:43728607-43789543
GeneTranscriptPositionBiotype
ENSG00000129317 (PUS7L)
pseudouridylate synthase 7 homolog (S. cerevisiae)-like 		ENST00000344862 (PUS7L-001) 43728612-43758817 protein_coding
ENST00000416848 (PUS7L-004) 43728607-43758758 protein_coding
ENST00000431332 (PUS7L-005) 43729763-43758793 protein_coding
ENST00000547156 (PUS7L-009) 43738353-43758759 protein_coding
ENST00000549868 (PUS7L-007) 43754867-43758759 protein_coding
ENST00000550784 (PUS7L-008) 43738333-43758759 protein_coding
ENST00000551923 (PUS7L-002) 43729258-43758773 protein_coding
ENST00000553166 (PUS7L-006) 43746214-43758767 non_stop_decay
ENSG00000198001 (IRAK4)
interleukin-1 receptor-associated kinase 4 		ENST00000431837 (IRAK4-201) 43758944-43789543 protein_coding
ENST00000440781 (IRAK4-005) 43758944-43786975 protein_coding
ENST00000448290 (IRAK4-001) 43758955-43788096 protein_coding
ENST00000546780 (IRAK4-009) 43758967-43768592 retained_intron
ENST00000547101 (IRAK4-004) 43758961-43786903 nonsense_mediated_decay
ENST00000547521 (IRAK4-007) 43758951-43786414 nonsense_mediated_decay
ENST00000547928 (IRAK4-012) 43773795-43782472 retained_intron
ENST00000550361 (IRAK4-008) 43759036-43772956 nonsense_mediated_decay
ENST00000550386 (IRAK4-003) 43758961-43786903 nonsense_mediated_decay
ENST00000550615 (IRAK4-006) 43758950-43786750 nonsense_mediated_decay
ENST00000550616 (IRAK4-011) 43758950-43771326 protein_coding
ENST00000551736 (IRAK4-002) 43758961-43786903 protein_coding
ENST00000552309 (IRAK4-010) 43758967-43782490 nonsense_mediated_decay
ENST00000613694 (IRAK4-202) 43758944-43789543 protein_coding
ENSG00000276981 (RP11-210N13.4)
 ENST00000621343 (RP11-210N13.4-001) 43789005-43789541 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006R6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033356-ENSMUSG00000059883 CGP 10090 15:94522688-94581815
GeneTranscriptPositionBiotype
ENSMUSG00000022451 (Twf1)
twinfilin, actin-binding protein, homolog 1 (Drosophila) 		ENSMUST00000023087 (Twf1-001) 94577951-94589879 protein_coding
ENSMUST00000127347 (Twf1-004) 94581020-94581386 retained_intron
ENSMUST00000152590 (Twf1-002) 94584443-94589889 protein_coding
ENSMUST00000155654 (Twf1-003) 94579666-94585475 processed_transcript
ENSMUSG00000033356 (Pus7l)
pseudouridylate synthase 7 homolog (S. cerevisiae)-like 		ENSMUST00000049151 (Pus7l-001) 94522688-94543547 protein_coding
ENSMUST00000134061 (Pus7l-003) 94540735-94543486 protein_coding
ENSMUST00000147832 (Pus7l-002) 94536159-94543493 retained_intron
ENSMUSG00000059883 (Irak4)
interleukin-1 receptor-associated kinase 4 		ENSMUST00000074936 (Irak4-001) 94543643-94568306 protein_coding
ENSMUST00000109248 (Irak4-002) 94543672-94581815 protein_coding
ENSMUST00000138306 (Irak4-003) 94543653-94556953 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R6_0001ENSG00000129317ENST00000344862ENST00000416848ENST00000431332ENST00000547156ENST00000549868ENST00000550784ENST00000551923ENST00000553166ENSG00000198001ENST00000431837ENST00000440781ENST00000448290ENST00000546780ENST00000547101ENST00000547521ENST00000547928ENST00000550361ENST00000550386ENST00000550615ENST00000550616ENST00000551736ENST00000552309ENST00000613694ENSG00000276981ENST00000621343CIL_0006R6_0002ENSMUSG00000022451ENSMUST00000023087ENSMUST00000127347ENSMUST00000152590ENSMUST00000155654ENSMUSG00000033356ENSMUST00000049151ENSMUST00000134061ENSMUST00000147832ENSMUSG00000059883ENSMUST00000074936ENSMUST00000109248ENSMUST00000138306
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006R6_0001ENSG00000129317ENST00000344862ENST00000416848ENST00000431332ENST00000549868ENST00000550784ENST00000551923ENSG00000198001ENST00000431837ENST00000440781ENST00000448290ENST00000547101ENST00000547521ENST00000550615ENST00000551736ENST00000613694ENSG00000276981ENST00000621343CIL_0006R6_0002ENSMUSG00000022451ENSMUST00000023087ENSMUST00000155654ENSMUSG00000033356ENSMUST00000049151ENSMUST00000147832ENSMUSG00000059883ENSMUST00000074936ENSMUST00000138306
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129317 ENST00000344862 0.214±0.00 N/A 1.083±0.00 1.811±0.00 2.785±2.51 1.026±0.58 0.696±0.00 0.642±0.00 0.995±0.88 N/A N/A 3.433±0.00 N/A N/A
ENST00000416848 N/A 0.159±0.00 N/A 0.458±0.00 N/A N/A N/A N/A N/A N/A N/A 0.423±0.00 0.165±0.05 0.416±0.00
ENST00000431332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.08 N/A N/A N/A
ENST00000547156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549868 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.947±0.00 1.156±0.00 N/A N/A N/A
ENST00000550784 N/A N/A 2.283±0.00 N/A N/A N/A N/A N/A N/A N/A 0.370±0.00 N/A N/A N/A
ENST00000551923 0.371±0.00 N/A N/A N/A N/A N/A 0.355±0.00 N/A N/A 0.039±0.00 N/A N/A N/A 0.218±0.00
ENST00000553166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198001 ENST00000431837 N/A 2.390±0.00 0.161±0.00 0.729±0.00 N/A 2.259±0.00 0.291±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000440781 N/A N/A 0.622±0.00 N/A 1.788±0.00 N/A N/A N/A N/A 3.662±0.00 N/A N/A N/A N/A
ENST00000448290 N/A N/A N/A N/A 1.400±0.00 1.112±0.00 0.329±0.00 1.011±0.00 N/A 1.405±0.00 0.217±0.00 0.860±0.00 0.885±0.19 N/A
ENST00000546780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547101 N/A N/A N/A 0.511±0.00 N/A N/A N/A N/A N/A 0.986±0.00 N/A N/A N/A N/A
ENST00000547521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.107±0.00
ENST00000547928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550615 N/A N/A N/A N/A N/A N/A N/A 0.971±0.00 N/A N/A N/A N/A N/A N/A
ENST00000550616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551736 N/A N/A 0.564±0.00 N/A N/A 0.986±0.00 0.196±0.00 N/A N/A N/A N/A N/A N/A 1.117±0.00
ENST00000552309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613694 N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A 0.504±0.00 0.496±0.00 N/A 0.615±0.08 N/A 1.600±0.00
ENSG00000276981 ENST00000621343 N/A N/A N/A N/A 3.881±0.00 N/A N/A N/A N/A N/A N/A 11.189±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022451 ENSMUST00000023087 29.273±1.24 14.602±1.98 40.975±2.15 15.200±8.40 15.728±5.08 38.545±4.59 3.671±1.35 33.751±2.34 12.607±3.08 20.012±1.22 2.031±0.45 28.336±7.81 22.503±11.68 6.370±2.48
ENSMUST00000127347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155654 N/A N/A N/A 8.274±0.00 N/A N/A N/A N/A N/A N/A N/A 20.927±0.00 27.339±9.19 5.179±0.00
ENSMUSG00000033356 ENSMUST00000049151 1.364±0.12 1.649±0.64 1.810±0.08 1.131±0.71 2.567±1.01 1.719±0.80 0.645±0.14 0.809±0.33 1.464±0.94 0.911±0.47 0.528±0.06 2.951±1.47 1.974±0.92 1.418±0.97
ENSMUST00000134061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A
ENSMUSG00000059883 ENSMUST00000074936 4.722±0.29 4.751±1.14 6.970±0.64 N/A 4.842±0.63 8.280±1.75 1.325±0.17 4.758±0.31 3.124±0.66 4.538±0.77 0.480±0.08 5.609±0.68 9.169±1.34 2.115±0.75
ENSMUST00000109248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138306 N/A N/A N/A N/A N/A 12.255±1.34 N/A N/A N/A N/A N/A N/A N/A N/A

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