C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006SB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000021442-ENSDARG00000075549 CGP 7955 7:44733496-45486203
GeneTranscriptPositionBiotype
ENSDARG00000021442 (cdh11)
cadherin 11, osteoblast 		ENSDART00000002279 (cdh11-201) 44733496-44760755 protein_coding
ENSDART00000127332 (cdh11-001) 44733498-44760755 protein_coding
ENSDART00000146126 (cdh11-002) 44735160-44759521 processed_transcript
ENSDARG00000075549 (cdh5)
cadherin 5 		ENSDART00000108766 (cdh5-201) 45433470-45455664 protein_coding
ENSDART00000111441 (cdh5-202) 45433470-45486203 protein_coding
ENSDARG00000087413 (BEAN1)
brain expressed, associated with NEDD4, 1 		ENSDART00000121826 (BEAN1-201) 45472800-45568430 protein_coding
CIL_0006SB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000140937-ENSG00000179776 CGP 9606 16:64943753-66404786
GeneTranscriptPositionBiotype
ENSG00000140937 (CDH11)
cadherin 11, type 2, OB-cadherin (osteoblast) 		ENST00000268603 (CDH11-001) 64943753-65122198 protein_coding
ENST00000394156 (CDH11-002) 64943753-65122036 protein_coding
ENST00000562325 (CDH11-017) 65004803-65122092 protein_coding
ENST00000562712 (CDH11-010) 65004709-65059678 protein_coding
ENST00000562882 (CDH11-016) 65004766-65072213 protein_coding
ENST00000562998 (CDH11-015) 65004660-65122065 protein_coding
ENST00000563255 (CDH11-008) 65053899-65124188 processed_transcript
ENST00000563492 (CDH11-005) 65053804-65126112 processed_transcript
ENST00000564317 (CDH11-007) 65004673-65122365 protein_coding
ENST00000564770 (CDH11-014) 65094607-65122015 processed_transcript
ENST00000565210 (CDH11-011) 65006862-65122046 processed_transcript
ENST00000566827 (CDH11-004) 64947547-65121930 protein_coding
ENST00000567934 (CDH11-003) 64991913-65072260 protein_coding
ENST00000568340 (CDH11-009) 65004853-65124286 processed_transcript
ENST00000569095 (CDH11-013) 64968434-64972949 processed_transcript
ENST00000569128 (CDH11-012) 64991343-64998629 retained_intron
ENST00000569624 (CDH11-018) 65004642-65124292 processed_transcript
ENST00000569783 (CDH11-006) 65118801-65122057 processed_transcript
ENST00000619158 (CDH11-019) 64984696-64988334 protein_coding
ENSG00000179776 (CDH5)
cadherin 5, type 2 (vascular endothelium) 		ENST00000341529 (CDH5-001) 66366630-66404786 protein_coding
ENST00000539168 (CDH5-002) 66395455-66403335 protein_coding
ENST00000562048 (CDH5-005) 66376341-66386992 protein_coding
ENST00000563425 (CDH5-007) 66379225-66392985 protein_coding
ENST00000565334 (CDH5-008) 66366690-66403408 nonsense_mediated_decay
ENST00000568023 (CDH5-003) 66377209-66379389 protein_coding
ENST00000568155 (CDH5-004) 66376390-66386827 protein_coding
ENST00000614547 (CDH5-201) 66366622-66404782 protein_coding
ENSG00000201999 (RNA5SP428)
RNA, 5S ribosomal pseudogene 428 		ENST00000365129 (RNA5SP428-201) 66301809-66301940 rRNA
ENSG00000259847 (RP11-95H3.1)
 ENST00000562742 (RP11-95H3.1-002) 65176151-65176713 lincRNA
ENST00000563754 (RP11-95H3.1-001) 65141756-65176573 lincRNA
ENSG00000260004 (RP11-351A20.2)
 ENST00000568659 (RP11-351A20.2-001) 65601101-65601698 lincRNA
ENSG00000260695 (RP11-513N24.1)
 ENST00000568767 (RP11-513N24.1-001) 65861112-65863784 lincRNA
ENSG00000261742 (LINC00922)
long intergenic non-protein coding RNA 922 		ENST00000564041 (LINC00922-003) 65285024-65571789 lincRNA
ENST00000568492 (LINC00922-002) 65285024-65571789 lincRNA
ENST00000569736 (LINC00922-001) 65284499-65576300 lincRNA
ENSG00000261818 (RP11-351A20.1)
 ENST00000563811 (RP11-351A20.1-001) 65580668-65646947 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SB_0001ENSDARG00000021442ENSDART00000002279ENSDART00000127332ENSDART00000146126ENSDARG00000075549ENSDART00000108766ENSDART00000111441ENSDARG00000087413ENSDART00000121826CIL_0006SB_0002ENSG00000140937ENST00000268603ENST00000394156ENST00000562325ENST00000562712ENST00000562882ENST00000562998ENST00000563255ENST00000563492ENST00000564317ENST00000564770ENST00000565210ENST00000566827ENST00000567934ENST00000568340ENST00000569095ENST00000569128ENST00000569624ENST00000569783ENST00000619158ENSG00000179776ENST00000341529ENST00000539168ENST00000562048ENST00000563425ENST00000565334ENST00000568023ENST00000568155ENST00000614547ENSG00000201999ENST00000365129ENSG00000259847ENST00000562742ENST00000563754ENSG00000260004ENST00000568659ENSG00000260695ENST00000568767ENSG00000261742ENST00000564041ENST00000568492ENST00000569736ENSG00000261818ENST00000563811
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SB_0001ENSDARG00000021442ENSDART00000002279ENSDART00000127332ENSDARG00000075549ENSDART00000108766ENSDART00000111441ENSDARG00000087413ENSDART00000121826CIL_0006SB_0002ENSG00000140937ENST00000268603ENST00000394156ENST00000565210ENST00000566827ENST00000567934ENST00000569095ENST00000619158ENSG00000179776ENST00000341529ENST00000563425ENST00000565334ENST00000614547ENSG00000201999ENST00000365129ENSG00000259847ENST00000562742ENST00000563754ENSG00000260004ENST00000568659ENSG00000260695ENST00000568767ENSG00000261742ENST00000564041ENST00000568492ENST00000569736ENSG00000261818ENST00000563811
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021442 ENSDART00000002279 N/A N/A N/A 11.961±2.01 N/A N/A 0.122±0.05 2.569±0.00 N/A N/A 1.214±0.00 N/A N/A N/A
ENSDART00000127332 N/A N/A N/A N/A N/A N/A 0.184±0.06 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000075549 ENSDART00000108766 N/A N/A N/A 1.228±0.00 N/A N/A 36.910±27.28 9.362±7.44 N/A N/A N/A N/A N/A N/A
ENSDART00000111441 N/A N/A N/A 3.741±1.76 N/A N/A 15.783±5.13 2.046±0.00 0.909±0.00 N/A N/A N/A N/A N/A
ENSDARG00000087413 ENSDART00000121826 N/A N/A N/A 5.107±0.00 N/A N/A 0.580±0.04 N/A 0.046±0.00 N/A 0.195±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140937 ENST00000268603 N/A 2.590±0.00 0.683±0.00 1.035±0.14 3.680±1.77 1.632±0.56 0.167±0.00 2.534±0.00 1.871±1.85 3.380±0.31 N/A 6.034±2.21 6.786±6.03 2.795±2.48
ENST00000394156 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.226±0.00 N/A N/A N/A 0.256±0.00
ENST00000562325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565210 N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A
ENST00000566827 5.800±0.00 8.538±0.00 0.818±0.00 3.594±1.33 4.318±1.64 2.741±1.33 1.939±0.00 4.799±0.00 N/A 6.993±3.85 0.510±0.30 33.197±31.81 38.602±0.00 6.240±4.66
ENST00000567934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A
ENST00000568340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569095 N/A N/A N/A N/A N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A N/A N/A
ENST00000569128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619158 N/A N/A N/A 0.649±0.00 N/A N/A N/A N/A N/A 1.932±0.00 N/A 2.717±0.00 N/A 0.275±0.00
ENSG00000179776 ENST00000341529 49.075±0.00 16.693±0.00 0.638±0.00 3.378±3.12 17.177±14.56 9.420±8.70 13.172±11.88 6.447±2.67 1.873±0.14 7.120±0.00 8.076±0.00 4.893±1.96 103.766±57.39 10.774±0.00
ENST00000539168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563425 N/A N/A N/A N/A 1.876±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565334 N/A N/A 1.438±0.00 0.864±0.00 N/A 1.161±0.00 1.436±0.00 N/A 1.371±0.00 N/A 2.457±0.00 2.098±0.00 N/A N/A
ENST00000568023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614547 16.335±0.00 9.451±0.00 N/A N/A 7.435±0.00 N/A 1.387±0.00 N/A 1.619±0.00 18.198±0.00 2.513±0.00 2.059±0.00 55.554±0.00 3.908±1.08
ENSG00000201999 ENST00000365129 N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259847 ENST00000562742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.516±0.00 N/A N/A
ENST00000563754 0.036±0.00 N/A N/A N/A 0.056±0.00 0.637±0.00 N/A N/A N/A 0.402±0.12 N/A 0.872±0.62 0.086±0.01 N/A
ENSG00000260004 ENST00000568659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.251±0.23
ENSG00000260695 ENST00000568767 N/A N/A N/A N/A N/A N/A 0.004±0.00 0.008±0.00 N/A 0.555±0.27 N/A 0.026±0.00 N/A 0.007±0.00
ENSG00000261742 ENST00000564041 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A
ENST00000568492 N/A N/A N/A N/A 0.242±0.00 N/A N/A N/A N/A 0.709±0.00 N/A N/A 0.033±0.00 N/A
ENST00000569736 N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A 0.018±0.00 0.029±0.00 N/A
ENSG00000261818 ENST00000563811 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.205±0.00 N/A N/A N/A N/A

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