C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006TB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167767-ENSG00000135480 CGP 9606 12:52168996-52252186
GeneTranscriptPositionBiotype
ENSG00000135480 (KRT7)
keratin 7 		ENST00000331817 (KRT7-001) 52233114-52248921 protein_coding
ENST00000546666 (KRT7-013) 52232665-52233440 processed_transcript
ENST00000546856 (KRT7-006) 52238719-52243541 processed_transcript
ENST00000547613 (KRT7-005) 52233592-52241508 processed_transcript
ENST00000548088 (KRT7-003) 52238688-52241971 retained_intron
ENST00000548657 (KRT7-011) 52245439-52252186 processed_transcript
ENST00000549127 (KRT7-018) 52243085-52248688 processed_transcript
ENST00000549638 (KRT7-010) 52247918-52248925 retained_intron
ENST00000550153 (KRT7-009) 52247658-52248921 processed_transcript
ENST00000551130 (KRT7-004) 52241545-52243411 retained_intron
ENST00000552183 (KRT7-007) 52241528-52244577 processed_transcript
ENST00000552322 (KRT7-008) 52244378-52248855 processed_transcript
ENST00000552400 (KRT7-012) 52232520-52233148 processed_transcript
ENSG00000167767 (KRT80)
keratin 80 		ENST00000313234 (KRT80-001) 52168996-52192000 protein_coding
ENST00000394815 (KRT80-002) 52168996-52192000 protein_coding
ENST00000466011 (KRT80-003) 52169523-52185749 retained_intron
ENSG00000170442 (KRT86)
keratin 86 		ENST00000293525 (KRT86-201) 52301865-52309163 protein_coding
ENST00000423955 (KRT86-001) 52274675-52309163 protein_coding
ENST00000553310 (KRT86-002) 52249300-52303159 protein_coding
ENSG00000257137 (C12orf80)
chromosome 12 open reading frame 80 		ENST00000551332 (C12orf80-003) 52205785-52208402 lincRNA
ENST00000551894 (C12orf80-001) 52205584-52210823 lincRNA
ENST00000553017 (C12orf80-002) 52209749-52210855 lincRNA
ENSG00000257649 (METTL7AP1)
methyltransferase like 7A pseudogene 1 		ENST00000547343 (METTL7AP1-001) 52229093-52229588 processed_pseudogene
ENSG00000257671 (RP3-416H24.1)
 ENST00000546686 (RP3-416H24.1-001) 52245048-52247448 antisense
ENSG00000258279 (LINC00592)
long intergenic non-protein coding RNA 592 		ENST00000549830 (LINC00592-001) 52210930-52223804 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0006TB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037185-ENSMUSG00000023039 CGP 10090 15:101349571-101430313
GeneTranscriptPositionBiotype
ENSMUSG00000023039 (Krt7)
keratin 7 		ENSMUST00000068904 (Krt7-001) 101412402-101430313 protein_coding
ENSMUST00000131069 (Krt7-002) 101412449-101427789 retained_intron
ENSMUST00000141190 (Krt7-004) 101411043-101411983 processed_transcript
ENSMUST00000147662 (Krt7-003) 101411103-101419507 protein_coding
ENSMUST00000153021 (Krt7-005) 101411052-101412395 processed_transcript
ENSMUST00000183401 (Krt7-006) 101411052-101427611 processed_transcript
ENSMUSG00000037185 (Krt80)
keratin 80 		ENSMUST00000077196 (Krt80-201) 101349571-101370125 protein_coding

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TB_0001ENSG00000135480ENST00000331817ENST00000546666ENST00000546856ENST00000547613ENST00000548088ENST00000548657ENST00000549127ENST00000549638ENST00000550153ENST00000551130ENST00000552183ENST00000552322ENST00000552400ENSG00000167767ENST00000313234ENST00000394815ENST00000466011ENSG00000170442ENST00000293525ENST00000423955ENST00000553310ENSG00000257137ENST00000551332ENST00000551894ENST00000553017ENSG00000257649ENST00000547343ENSG00000257671ENST00000546686ENSG00000258279ENST00000549830CIL_0006TB_0002ENSMUSG00000023039ENSMUST00000068904ENSMUST00000131069ENSMUST00000141190ENSMUST00000147662ENSMUST00000153021ENSMUST00000183401ENSMUSG00000037185ENSMUST00000077196
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TB_0001ENSG00000135480ENST00000331817ENST00000546666ENST00000546856ENST00000548657ENST00000549127ENST00000550153ENST00000552183ENST00000552322ENSG00000167767ENST00000313234ENST00000394815ENST00000466011ENSG00000170442ENST00000293525ENST00000423955ENST00000553310ENSG00000257137ENST00000551332ENST00000551894ENST00000553017ENSG00000257649ENST00000547343ENSG00000257671ENST00000546686ENSG00000258279ENST00000549830CIL_0006TB_0002ENSMUSG00000023039ENSMUST00000068904ENSMUST00000131069ENSMUST00000141190ENSMUST00000147662ENSMUSG00000037185ENSMUST00000077196
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135480 ENST00000331817 1.069±0.00 0.305±0.00 2.949±0.00 0.050±0.00 40.395±38.43 0.502±0.19 0.222±0.07 56.938±55.78 4.277±0.00 137.012±128.57 0.157±0.00 25.079±23.07 681.743±191.77 5.042±0.00
ENST00000546666 N/A N/A N/A N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000546856 N/A 0.482±0.00 N/A N/A N/A N/A 0.402±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000547613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548657 N/A 0.147±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549127 N/A N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A 0.291±0.00 N/A N/A N/A
ENST00000549638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550153 N/A N/A N/A N/A N/A 1.064±0.00 0.275±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000551130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552183 N/A N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000552322 N/A N/A N/A N/A N/A N/A 0.284±0.00 1.229±0.00 N/A N/A N/A N/A N/A N/A
ENST00000552400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167767 ENST00000313234 N/A N/A 0.138±0.00 N/A N/A 0.081±0.00 N/A 1.063±0.00 N/A N/A N/A 1.530±1.85 5.272±2.74 0.182±0.00
ENST00000394815 0.145±0.00 0.042±0.00 N/A 0.024±0.00 1.369±0.00 N/A N/A N/A 0.051±0.00 N/A 0.262±0.00 0.651±0.04 6.398±2.05 0.515±0.00
ENST00000466011 N/A N/A N/A 0.043±0.00 0.176±0.00 0.013±0.00 0.053±0.02 0.127±0.00 N/A N/A N/A 0.974±0.00 N/A N/A
ENSG00000170442 ENST00000293525 N/A 0.029±0.00 N/A 0.229±0.00 0.273±0.13 N/A N/A 0.128±0.00 0.028±0.00 0.077±0.00 N/A 0.064±0.05 2.052±1.45 0.485±0.00
ENST00000423955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.689±0.39
ENST00000553310 N/A N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257137 ENST00000551332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.247±0.00
ENST00000551894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.740±0.97
ENST00000553017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.340±0.00
ENSG00000257649 ENST00000547343 0.034±0.00 0.035±0.00 N/A 0.038±0.00 0.111±0.00 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A
ENSG00000257671 ENST00000546686 0.146±0.00 0.069±0.00 N/A N/A 4.468±3.70 N/A N/A N/A N/A 2.662±0.00 0.070±0.00 3.379±0.00 N/A 0.428±0.18
ENSG00000258279 ENST00000549830 N/A N/A N/A 0.090±0.03 N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 0.242±0.09 1.625±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023039 ENSMUST00000068904 4.492±3.16 0.241±0.11 N/A 0.066±0.03 20.703±10.31 38.398±1.63 0.329±0.15 10.990±3.94 0.205±0.13 23.593±11.71 0.019±0.01 15.375±9.75 29.575±11.89 0.121±0.07
ENSMUST00000131069 3.979±3.28 0.277±0.05 46.191±5.54 0.291±0.10 7.924±1.85 9.188±1.30 0.657±0.31 10.258±2.77 0.384±0.27 20.219±4.01 0.031±0.02 4.788±1.43 76.038±32.80 0.133±0.09
ENSMUST00000141190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A
ENSMUST00000147662 N/A N/A N/A 0.869±0.00 N/A N/A N/A N/A 1.144±0.28 N/A N/A 19.893±5.38 239.603±150.50 1.050±0.00
ENSMUST00000153021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037185 ENSMUST00000077196 N/A 0.267±0.08 0.428±0.00 1.219±1.67 N/A N/A N/A N/A 0.055±0.05 N/A 0.315±0.17 1.767±1.30 6.882±0.78 0.133±0.08

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