C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006TI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070601-ENSG00000165275 CGP 9606 9:37651000-37778972
GeneTranscriptPositionBiotype
ENSG00000070601 (FRMPD1)
FERM and PDZ domain containing 1 		ENST00000359927 (FRMPD1-003) 37669778-37707502 protein_coding
ENST00000377765 (FRMPD1-001) 37651000-37746904 protein_coding
ENST00000539465 (FRMPD1-002) 37668005-37746904 protein_coding
ENSG00000107371 (EXOSC3)
exosome component 3 		ENST00000327304 (EXOSC3-001) 37779714-37785057 protein_coding
ENST00000396521 (EXOSC3-002) 37780607-37785064 protein_coding
ENST00000465229 (EXOSC3-005) 37766978-37785061 nonsense_mediated_decay
ENST00000465860 (EXOSC3-007) 37781804-37784745 retained_intron
ENST00000482614 (EXOSC3-008) 37780806-37801437 processed_transcript
ENST00000489414 (EXOSC3-009) 37780691-37800709 processed_transcript
ENST00000490516 (EXOSC3-004) 37780588-37784713 processed_transcript
ENST00000496910 (EXOSC3-006) 37783872-37784745 retained_intron
ENSG00000165275 (TRMT10B)
tRNA methyltransferase 10 homolog B (S. cerevisiae) 		ENST00000297994 (TRMT10B-001) 37753817-37778972 protein_coding
ENST00000377753 (TRMT10B-201) 37753803-37778965 protein_coding
ENST00000377754 (TRMT10B-002) 37753817-37778681 protein_coding
ENST00000488673 (TRMT10B-003) 37753817-37778022 nonsense_mediated_decay
ENST00000509577 (TRMT10B-008) 37769557-37770755 retained_intron
ENST00000537016 (TRMT10B-007) 37753817-37776430 nonsense_mediated_decay
ENST00000537911 (TRMT10B-202) 37753803-37778965 protein_coding
ENST00000538370 (TRMT10B-004) 37753817-37768163 nonsense_mediated_decay
ENST00000540616 (TRMT10B-005) 37753817-37763757 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0006TI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035615-ENSMUSG00000035601 CGP 10090 4:45184875-45316131
GeneTranscriptPositionBiotype
ENSMUSG00000035601 (Trmt10b)
tRNA methyltransferase 10B 		ENSMUST00000044673 (Trmt10b-001) 45297127-45316131 protein_coding
ENSMUST00000107800 (Trmt10b-002) 45300434-45315142 protein_coding
ENSMUST00000126972 (Trmt10b-003) 45300434-45315142 processed_transcript
ENSMUST00000141659 (Trmt10b-005) 45300414-45308721 processed_transcript
ENSMUST00000142785 (Trmt10b-007) 45300434-45304385 processed_transcript
ENSMUST00000144781 (Trmt10b-004) 45297155-45304388 protein_coding
ENSMUST00000145756 (Trmt10b-006) 45314098-45315048 processed_transcript
ENSMUSG00000035615 (Frmpd1)
FERM and PDZ domain containing 1 		ENSMUST00000044773 (Frmpd1-201) 45184906-45285936 protein_coding
ENSMUST00000107804 (Frmpd1-001) 45203925-45285936 protein_coding
ENSMUST00000134280 (Frmpd1-002) 45184875-45261900 protein_coding
ENSMUSG00000086284 (Frmpd1os)
FERM and PDZ domain containing 1, opposite strand 		ENSMUST00000134640 (Frmpd1os-001) 45234723-45243990 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TI_0001ENSG00000070601ENST00000359927ENST00000377765ENST00000539465ENSG00000107371ENST00000327304ENST00000396521ENST00000465229ENST00000465860ENST00000482614ENST00000489414ENST00000490516ENST00000496910ENSG00000165275ENST00000297994ENST00000377753ENST00000377754ENST00000488673ENST00000509577ENST00000537016ENST00000537911ENST00000538370ENST00000540616CIL_0006TI_0002ENSMUSG00000035601ENSMUST00000044673ENSMUST00000107800ENSMUST00000126972ENSMUST00000141659ENSMUST00000142785ENSMUST00000144781ENSMUST00000145756ENSMUSG00000035615ENSMUST00000044773ENSMUST00000107804ENSMUST00000134280ENSMUSG00000086284ENSMUST00000134640
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TI_0001ENSG00000070601ENST00000359927ENST00000377765ENSG00000107371ENST00000327304ENST00000396521ENST00000489414ENSG00000165275ENST00000297994ENST00000377753ENST00000488673ENST00000537911ENST00000540616CIL_0006TI_0002ENSMUSG00000035601ENSMUST00000044673ENSMUST00000107800ENSMUST00000126972ENSMUST00000141659ENSMUST00000144781ENSMUSG00000035615ENSMUST00000044773ENSMUST00000107804ENSMUST00000134280ENSMUSG00000086284ENSMUST00000134640
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070601 ENST00000359927 0.061±0.00 0.347±0.00 N/A N/A 0.134±0.00 0.098±0.00 0.090±0.00 0.054±0.00 0.162±0.00 0.062±0.00 N/A 0.153±0.06 0.140±0.04 N/A
ENST00000377765 N/A N/A 0.040±0.00 0.443±0.25 0.074±0.00 0.183±0.15 0.187±0.14 0.282±0.00 0.018±0.00 0.035±0.01 0.628±0.00 0.071±0.02 0.043±0.01 2.361±0.09
ENST00000539465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000107371 ENST00000327304 N/A N/A N/A N/A N/A N/A 1.945±0.00 N/A 6.947±0.00 5.745±0.00 N/A 6.932±0.00 N/A N/A
ENST00000396521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.867±0.00 29.506±0.00 57.744±0.00
ENST00000465229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.614±0.00 N/A N/A
ENST00000490516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165275 ENST00000297994 0.640±0.00 2.281±0.00 N/A 2.037±0.00 1.060±0.24 0.582±0.00 0.155±0.00 0.619±0.20 N/A N/A N/A 2.164±1.24 0.489±0.20 1.125±0.56
ENST00000377753 N/A 1.310±0.00 N/A N/A 0.775±0.14 1.479±0.00 0.468±0.11 0.936±0.00 1.201±0.75 N/A 0.344±0.00 1.218±0.06 N/A 1.000±0.00
ENST00000377754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488673 N/A 1.266±0.00 N/A N/A 0.686±0.33 0.988±0.00 0.416±0.00 0.925±0.00 N/A 1.617±0.00 N/A 1.220±0.70 0.616±0.06 0.834±0.00
ENST00000509577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537911 N/A 1.256±0.00 N/A 1.606±0.00 1.166±0.00 N/A 0.840±0.00 1.270±0.00 N/A 0.415±0.00 N/A N/A N/A 1.036±0.00
ENST00000538370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.837±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035601 ENSMUST00000044673 0.850±0.23 0.693±0.45 3.109±0.41 4.063±2.49 1.073±0.53 1.140±0.53 0.710±0.12 1.472±0.39 1.269±0.81 1.154±0.32 1.074±0.16 1.660±0.98 1.927±1.01 2.293±0.73
ENSMUST00000107800 N/A N/A N/A 6.385±0.00 N/A N/A N/A N/A N/A N/A 0.614±0.14 6.309±0.00 3.937±0.51 5.435±5.94
ENSMUST00000126972 N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00 0.913±0.00 1.003±0.29 2.416±1.94 4.636±1.19 N/A
ENSMUST00000141659 N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.16 N/A N/A
ENSMUST00000142785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144781 N/A N/A N/A N/A N/A 0.691±0.00 N/A N/A N/A N/A 1.042±0.07 4.634±3.91 5.245±1.17 24.191±0.00
ENSMUST00000145756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035615 ENSMUST00000044773 0.071±0.06 1.237±0.58 0.091±0.01 1.292±1.29 0.289±0.07 0.179±0.06 0.121±0.03 0.359±0.11 0.036±0.02 1.434±0.20 0.360±0.14 0.718±0.25 10.249±13.15 0.894±0.15
ENSMUST00000107804 0.108±0.06 0.780±0.65 N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A 0.282±0.10 N/A N/A
ENSMUST00000134280 N/A N/A N/A 6.359±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 45.661±27.20 3.558±0.00
ENSMUSG00000086284 ENSMUST00000134640 N/A N/A N/A 0.174±0.08 N/A N/A N/A N/A N/A N/A N/A 0.981±0.61 0.252±0.08 N/A

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