C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006TL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107338-ENSG00000137124 CGP 9606 9:37919134-38398661
GeneTranscriptPositionBiotype
ENSG00000107338 (SHB)
Src homology 2 domain containing adaptor protein B 		ENST00000377707 (SHB-001) 37919134-38069211 protein_coding
ENSG00000137124 (ALDH1B1)
aldehyde dehydrogenase 1 family, member B1 		ENST00000377698 (ALDH1B1-001) 38392664-38398661 protein_coding
ENSG00000223716 (RP11-113O24.3)
 ENST00000422554 (RP11-113O24.3-001) 38360427-38376430 lincRNA
ENSG00000251745 (RNU7-124P)
RNA, U7 small nuclear 124 pseudogene 		ENST00000515936 (RNU7-124P-201) 37936707-37936768 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006TL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044813-ENSMUSG00000035561 CGP 10090 4:45423278-45804604
GeneTranscriptPositionBiotype
ENSMUSG00000035561 (Aldh1b1)
aldehyde dehydrogenase 1 family, member B1 		ENSMUST00000044384 (Aldh1b1-001) 45799022-45804604 protein_coding
ENSMUST00000172750 (Aldh1b1-002) 45799121-45802858 protein_coding
ENSMUSG00000044813 (Shb)
src homology 2 domain-containing transforming protein B 		ENSMUST00000061986 (Shb-001) 45423278-45530330 protein_coding
ENSMUST00000125599 (Shb-006) 45447506-45489403 retained_intron
ENSMUST00000130107 (Shb-004) 45444706-45492841 processed_transcript
ENSMUST00000146236 (Shb-005) 45458129-45489794 protein_coding
ENSMUST00000147448 (Shb-003) 45458320-45532470 protein_coding
ENSMUST00000147926 (Shb-002) 45423278-45482802 processed_transcript
ENSMUSG00000073860 (Gm829)
predicted gene 829 		ENSMUST00000123741 (Gm829-002) 45683589-45692938 lincRNA
ENSMUST00000146622 (Gm829-001) 45683589-45723338 lincRNA
ENSMUSG00000081559 (Gm12411)
predicted gene 12411 		ENSMUST00000119140 (Gm12411-001) 45550017-45550499 processed_pseudogene
ENSMUSG00000085305 (Gm12410)
predicted gene 12410 		ENSMUST00000124989 (Gm12410-001) 45715169-45716421 lincRNA
ENSMUSG00000085876 (Gm12409)
predicted gene 12409 		ENSMUST00000147231 (Gm12409-001) 45762377-45764223 processed_transcript
ENSMUSG00000085980 (Gm12408)
predicted gene 12408 		ENSMUST00000151883 (Gm12408-001) 45639936-45642304 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TL_0001ENSG00000107338ENST00000377707ENSG00000137124ENST00000377698ENSG00000223716ENST00000422554ENSG00000251745ENST00000515936CIL_0006TL_0002ENSMUSG00000035561ENSMUST00000044384ENSMUST00000172750ENSMUSG00000044813ENSMUST00000061986ENSMUST00000125599ENSMUST00000130107ENSMUST00000146236ENSMUST00000147448ENSMUST00000147926ENSMUSG00000073860ENSMUST00000123741ENSMUST00000146622ENSMUSG00000081559ENSMUST00000119140ENSMUSG00000085305ENSMUST00000124989ENSMUSG00000085876ENSMUST00000147231ENSMUSG00000085980ENSMUST00000151883
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TL_0001ENSG00000107338ENST00000377707ENSG00000137124ENST00000377698ENSG00000223716ENST00000422554ENSG00000251745ENST00000515936CIL_0006TL_0002ENSMUSG00000035561ENSMUST00000044384ENSMUST00000172750ENSMUSG00000044813ENSMUST00000061986ENSMUST00000125599ENSMUST00000146236ENSMUST00000147926ENSMUSG00000073860ENSMUST00000123741ENSMUST00000146622ENSMUSG00000081559ENSMUST00000119140ENSMUSG00000085305ENSMUST00000124989ENSMUSG00000085876ENSMUST00000147231ENSMUSG00000085980ENSMUST00000151883
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107338 ENST00000377707 N/A N/A 3.856±0.00 16.259±0.00 N/A 5.757±0.00 6.793±4.66 5.740±0.00 11.079±6.60 19.158±16.74 N/A 16.470±7.02 12.770±1.22 N/A
ENSG00000137124 ENST00000377698 10.038±0.00 37.709±0.00 5.511±0.00 2.683±1.43 9.196±0.93 10.400±4.54 2.642±1.71 19.654±0.20 20.717±0.36 3.670±3.03 9.909±7.29 14.480±7.15 5.001±1.41 10.808±6.47
ENSG00000223716 ENST00000422554 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00
ENSG00000251745 ENST00000515936 N/A N/A N/A 1.184±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035561 ENSMUST00000044384 4.036±3.66 20.449±1.09 10.938±0.01 5.781±1.46 0.776±0.29 67.683±6.33 8.477±1.00 2.178±0.31 41.402±10.52 1.651±0.28 0.355±0.12 15.827±3.60 11.155±14.63 4.933±0.61
ENSMUST00000172750 N/A N/A N/A N/A 0.901±0.28 N/A N/A N/A N/A 1.111±0.00 N/A N/A N/A N/A
ENSMUSG00000044813 ENSMUST00000061986 6.339±0.97 31.324±5.54 12.211±0.50 8.376±4.31 7.912±1.10 14.503±1.46 5.923±0.64 18.793±3.50 9.216±5.09 13.249±1.66 1.120±0.17 10.194±4.19 7.732±4.16 2.316±1.09
ENSMUST00000125599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.507±0.04 N/A N/A N/A
ENSMUST00000130107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146236 N/A N/A N/A 9.402±0.00 N/A N/A N/A N/A N/A N/A N/A 12.193±0.00 25.841±4.17 3.094±0.00
ENSMUST00000147448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147926 N/A N/A N/A N/A N/A N/A N/A N/A 8.817±2.71 N/A N/A N/A N/A N/A
ENSMUSG00000073860 ENSMUST00000123741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A
ENSMUST00000146622 N/A N/A N/A N/A 0.121±0.04 N/A N/A N/A 0.078±0.00 N/A N/A 0.062±0.00 N/A 0.103±0.00
ENSMUSG00000081559 ENSMUST00000119140 N/A N/A 0.088±0.00 0.074±0.02 0.207±0.05 N/A 0.153±0.05 0.176±0.05 0.225±0.16 0.173±0.00 0.122±0.02 0.364±0.07 0.101±0.05 N/A
ENSMUSG00000085305 ENSMUST00000124989 N/A N/A N/A 0.091±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085876 ENSMUST00000147231 0.061±0.00 N/A N/A 0.085±0.05 0.163±0.04 0.370±0.07 0.535±0.10 N/A 0.094±0.00 0.244±0.14 N/A 0.483±0.29 0.033±0.01 0.730±0.29
ENSMUSG00000085980 ENSMUST00000151883 0.033±0.00 N/A N/A 0.114±0.00 0.057±0.02 0.531±0.13 N/A 0.033±0.00 0.049±0.00 N/A 0.066±0.00 0.071±0.02 0.065±0.03 N/A

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