C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006VZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000121966-ENSG00000144229 CGP 9606 2:136114349-137677717
GeneTranscriptPositionBiotype
ENSG00000121966 (CXCR4)
chemokine (C-X-C motif) receptor 4 		ENST00000241393 (CXCR4-001) 136114351-136118165 protein_coding
ENST00000409817 (CXCR4-003) 136114349-136116243 protein_coding
ENST00000466288 (CXCR4-002) 136114637-136117737 processed_transcript
ENSG00000144229 (THSD7B)
thrombospondin, type I, domain containing 7B 		ENST00000272643 (THSD7B-201) 136882179-137677717 protein_coding
ENST00000409968 (THSD7B-001) 136765545-137677717 protein_coding
ENST00000413152 (THSD7B-202) 136990892-137677717 protein_coding
ENST00000472720 (THSD7B-002) 136765545-137056515 nonsense_mediated_decay
ENST00000480352 (THSD7B-004) 137642243-137655640 retained_intron
ENST00000485379 (THSD7B-003) 137155960-137170915 processed_transcript
ENSG00000221762 (AC092786.1)
 ENST00000408835 (AC092786.1-201) 136645108-136645192 miRNA
ENSG00000227347 (HNRNPKP2)
heterogeneous nuclear ribonucleoprotein K pseudogene 2 		ENST00000447355 (HNRNPKP2-001) 136199114-136200503 processed_pseudogene
ENSG00000229568 (AC010146.1)
 ENST00000414479 (AC010146.1-001) 136544712-136545542 unprocessed_pseudogene
ENSG00000230037 (UBBP1)
ubiquitin B pseudogene 1 		ENST00000392399 (UBBP1-001) 136329441-136329913 processed_pseudogene
ENSG00000279024 (RP11-1193F23.1)
 ENST00000624070 (RP11-1193F23.1-001) 136230753-136233245 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0006VZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045382-ENSMUSG00000042581 CGP 10090 1:128588199-130219278
GeneTranscriptPositionBiotype
ENSMUSG00000042581 (Thsd7b)
thrombospondin, type I, domain containing 7B 		ENSMUST00000040311 (Thsd7b-002) 129273463-130050352 protein_coding
ENSMUST00000073527 (Thsd7b-001) 129273344-130219278 protein_coding
ENSMUST00000140629 (Thsd7b-007) 129273485-129629012 processed_transcript
ENSMUST00000140834 (Thsd7b-008) 130163831-130219276 processed_transcript
ENSMUST00000143130 (Thsd7b-006) 130163846-130165398 processed_transcript
ENSMUST00000148051 (Thsd7b-003) 129273302-129431058 retained_intron
ENSMUST00000151700 (Thsd7b-005) 129915539-130183181 processed_transcript
ENSMUST00000152305 (Thsd7b-004) 129537511-129629046 protein_coding
ENSMUST00000190870 (Thsd7b-009) 129613275-129616043 retained_intron
ENSMUSG00000045382 (Cxcr4)
chemokine (C-X-C motif) receptor 4 		ENSMUST00000052172 (Cxcr4-001) 128588199-128592290 protein_coding
ENSMUST00000142893 (Cxcr4-002) 128589099-128592293 protein_coding
ENSMUSG00000089648 (Gm15790)
predicted pseudogene 15790 		ENSMUST00000161109 (Gm15790-001) 129796608-129797858 processed_pseudogene
ENSMUSG00000094122 (Rpl31-ps9)
ribosomal protein L31, pseudogene 9 		ENSMUST00000086596 (Rpl31-ps9-001) 129801387-129801764 processed_pseudogene
ENSMUSG00000097283 (Gm26686)
predicted gene, 26686 		ENSMUST00000181951 (Gm26686-001) 128770599-128774421 lincRNA
ENSMUSG00000100623 (RP24-545N23.1)
predicted gene 29428 		ENSMUST00000190086 (RP24-545N23.1-001) 130195980-130196388 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VZ_0001ENSG00000121966ENST00000241393ENST00000409817ENST00000466288ENSG00000144229ENST00000272643ENST00000409968ENST00000413152ENST00000472720ENST00000480352ENST00000485379ENSG00000221762ENST00000408835ENSG00000227347ENST00000447355ENSG00000229568ENST00000414479ENSG00000230037ENST00000392399ENSG00000279024ENST00000624070CIL_0006VZ_0002ENSMUSG00000042581ENSMUST00000040311ENSMUST00000073527ENSMUST00000140629ENSMUST00000140834ENSMUST00000143130ENSMUST00000148051ENSMUST00000151700ENSMUST00000152305ENSMUST00000190870ENSMUSG00000045382ENSMUST00000052172ENSMUST00000142893ENSMUSG00000089648ENSMUST00000161109ENSMUSG00000094122ENSMUST00000086596ENSMUSG00000097283ENSMUST00000181951ENSMUSG00000100623ENSMUST00000190086
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006VZ_0001ENSG00000121966ENST00000241393ENST00000409817ENSG00000144229ENST00000272643ENST00000409968ENST00000413152ENST00000472720ENST00000480352ENST00000485379ENSG00000221762ENST00000408835ENSG00000227347ENST00000447355ENSG00000229568ENST00000414479ENSG00000230037ENST00000392399ENSG00000279024ENST00000624070CIL_0006VZ_0002ENSMUSG00000042581ENSMUST00000040311ENSMUST00000073527ENSMUST00000140629ENSMUST00000140834ENSMUST00000148051ENSMUST00000151700ENSMUST00000152305ENSMUST00000190870ENSMUSG00000045382ENSMUST00000052172ENSMUST00000142893ENSMUSG00000089648ENSMUST00000161109ENSMUSG00000094122ENSMUST00000086596ENSMUSG00000097283ENSMUST00000181951ENSMUSG00000100623ENSMUST00000190086
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000121966 ENST00000241393 30.603±0.00 179.648±0.00 N/A 1.327±0.05 6.537±0.08 5.842±2.40 1.539±0.73 3.437±1.76 6.253±2.18 39.318±19.95 1.629±0.35 15.105±8.51 23.372±3.01 7.606±1.05
ENST00000409817 N/A N/A 1.660±0.00 N/A 1.948±0.00 N/A N/A N/A N/A 4.484±0.00 N/A N/A N/A N/A
ENST00000466288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144229 ENST00000272643 N/A 0.111±0.00 N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409968 0.220±0.00 N/A N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.222±0.00
ENST00000413152 N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.037±0.00 0.077±0.07 N/A 0.034±0.03 0.047±0.03 0.060±0.04 N/A
ENST00000472720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00
ENST00000480352 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A 0.195±0.00 N/A N/A N/A
ENST00000485379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A
ENSG00000221762 ENST00000408835 N/A N/A N/A N/A N/A N/A 0.272±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000227347 ENST00000447355 0.056±0.00 0.039±0.00 N/A 0.040±0.00 0.019±0.00 0.027±0.00 0.009±0.00 0.039±0.00 0.033±0.00 0.009±0.00 0.032±0.00 0.041±0.01 0.017±0.00 0.056±0.02
ENSG00000229568 ENST00000414479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00
ENSG00000230037 ENST00000392399 0.294±0.00 0.643±0.00 N/A 1.044±0.00 0.601±0.00 0.622±0.00 0.246±0.00 0.695±0.00 0.805±0.00 0.518±0.00 0.853±0.00 0.057±0.00 0.063±0.00 0.609±0.54
ENSG00000279024 ENST00000624070 N/A 0.181±0.00 N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 0.008±0.00 0.028±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042581 ENSMUST00000040311 0.056±0.02 0.068±0.00 0.019±0.00 N/A 0.048±0.00 0.063±0.00 0.030±0.00 0.013±0.00 0.013±0.00 0.017±0.00 N/A N/A 0.032±0.01 N/A
ENSMUST00000073527 0.086±0.03 N/A 0.063±0.02 1.429±0.61 N/A 0.033±0.00 0.031±0.01 0.008±0.00 0.018±0.01 0.049±0.00 0.045±0.01 0.235±0.10 0.003±0.00 N/A
ENSMUST00000140629 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.154±0.00 N/A N/A N/A
ENSMUST00000140834 0.055±0.02 0.145±0.00 N/A N/A 0.072±0.00 0.044±0.00 N/A 0.029±0.01 0.060±0.03 0.024±0.00 0.040±0.01 0.241±0.05 0.011±0.00 6.021±0.81
ENSMUST00000143130 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148051 N/A 0.096±0.02 N/A N/A N/A 0.100±0.00 N/A 0.068±0.00 N/A 0.169±0.00 N/A 0.617±0.27 N/A N/A
ENSMUST00000151700 N/A 0.038±0.00 N/A N/A 0.026±0.00 0.028±0.00 N/A N/A 0.023±0.01 0.018±0.00 0.016±0.00 0.205±0.11 0.004±0.00 N/A
ENSMUST00000152305 0.061±0.03 0.119±0.04 0.068±0.00 N/A 0.075±0.07 0.093±0.04 0.073±0.00 0.029±0.02 0.048±0.02 0.079±0.04 0.063±0.02 0.329±0.18 0.020±0.01 N/A
ENSMUST00000190870 0.087±0.01 N/A N/A N/A 0.070±0.03 0.111±0.04 0.018±0.00 0.015±0.00 0.025±0.00 0.060±0.03 0.017±0.00 0.244±0.11 0.013±0.01 N/A
ENSMUSG00000045382 ENSMUST00000052172 6.818±0.92 6.703±3.48 1.894±0.29 8.261±5.96 12.043±3.09 3.188±0.73 3.266±0.52 2.085±0.49 4.167±4.85 33.793±5.45 1.114±0.59 4.079±0.92 1.065±0.57 1.256±0.53
ENSMUST00000142893 N/A N/A 1.184±0.00 7.834±0.00 N/A 1.938±0.03 N/A 1.345±0.00 2.048±1.95 31.258±0.00 0.555±0.10 3.818±0.59 1.286±0.51 1.617±0.00
ENSMUSG00000089648 ENSMUST00000161109 0.163±0.00 0.209±0.05 0.051±0.00 0.035±0.00 N/A N/A 0.127±0.00 0.049±0.01 0.043±0.04 N/A N/A 0.197±0.06 0.028±0.00 0.068±0.06
ENSMUSG00000094122 ENSMUST00000086596 0.161±0.00 N/A 146.709±89.28 120.317±37.22 N/A N/A N/A N/A 157.738±196.35 N/A 0.203±0.02 0.614±0.32 0.247±0.09 0.155±0.00
ENSMUSG00000097283 ENSMUST00000181951 0.463±0.29 1.611±0.17 0.884±0.13 1.544±1.06 0.775±0.51 1.244±0.27 0.276±0.13 0.293±0.10 0.490±0.41 0.881±0.23 0.024±0.01 1.065±0.80 0.435±0.16 5.139±2.60
ENSMUSG00000100623 ENSMUST00000190086 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A 0.023±0.00 N/A N/A 0.116±0.00 N/A 0.303±0.06

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