C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006YB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007461-ENSDARG00000063414 CGP 7955 18:12311302-12599686
GeneTranscriptPositionBiotype
ENSDARG00000002249 (tbxas1)
thromboxane A synthase 1 (platelet, cytochrome P450, family 5, subfamily A) 		ENSDART00000047555 (tbxas1-201) 12104314-12321906 protein_coding
ENSDART00000109497 (tbxas1-202) 12107697-12282878 protein_coding
ENSDART00000144246 (tbxas1-001) 12104319-12282876 protein_coding
ENSDARG00000007461 (srgap1)
SLIT-ROBO Rho GTPase activating protein 1 		ENSDART00000088908 (srgap1-201) 12311302-12505454 protein_coding
ENSDART00000140403 (srgap1-001) 12315953-12406004 protein_coding
ENSDARG00000063414 (tmem5)
transmembrane protein 5 		ENSDART00000092648 (tmem5-201) 12511863-12599686 protein_coding
ENSDARG00000087650 (CABZ01034126.1)
Uncharacterized protein 		ENSDART00000122384 (CABZ01034126.1-201) 12548503-12561385 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006YB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020121-ENSMUSG00000034620 CGP 10090 10:121780991-122097371
GeneTranscriptPositionBiotype
ENSMUSG00000020121 (Srgap1)
SLIT-ROBO Rho GTPase activating protein 1 		ENSMUST00000020322 (Srgap1-001) 121780991-122047308 protein_coding
ENSMUST00000081688 (Srgap1-201) 121780991-122047315 protein_coding
ENSMUST00000161156 (Srgap1-004) 121806640-121823133 protein_coding
ENSMUST00000161996 (Srgap1-003) 121785240-121807104 processed_transcript
ENSMUST00000162710 (Srgap1-002) 121895837-122047315 retained_intron
ENSMUSG00000034620 (Tmem5)
transmembrane protein 5 		ENSMUST00000038772 (Tmem5-002) 122081260-122097156 nonsense_mediated_decay
ENSMUST00000125506 (Tmem5-006) 122081682-122089389 retained_intron
ENSMUST00000129359 (Tmem5-004) 122088645-122090705 retained_intron
ENSMUST00000135083 (Tmem5-003) 122096056-122097126 processed_transcript
ENSMUST00000140299 (Tmem5-001) 122078114-122097371 protein_coding
ENSMUST00000141057 (Tmem5-005) 122089022-122096136 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006YB_0001ENSDARG00000002249ENSDART00000047555ENSDART00000109497ENSDART00000144246ENSDARG00000007461ENSDART00000088908ENSDART00000140403ENSDARG00000063414ENSDART00000092648ENSDARG00000087650ENSDART00000122384CIL_0006YB_0002ENSMUSG00000020121ENSMUST00000020322ENSMUST00000081688ENSMUST00000161156ENSMUST00000161996ENSMUST00000162710ENSMUSG00000034620ENSMUST00000038772ENSMUST00000125506ENSMUST00000129359ENSMUST00000135083ENSMUST00000140299ENSMUST00000141057
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006YB_0001ENSDARG00000002249ENSDART00000047555ENSDART00000109497ENSDART00000144246ENSDARG00000007461ENSDART00000088908ENSDART00000140403ENSDARG00000063414ENSDART00000092648ENSDARG00000087650ENSDART00000122384CIL_0006YB_0002ENSMUSG00000020121ENSMUST00000020322ENSMUST00000081688ENSMUST00000161996ENSMUSG00000034620ENSMUST00000038772ENSMUST00000135083ENSMUST00000140299ENSMUST00000141057
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002249 ENSDART00000047555 N/A N/A N/A 4.954±0.36 N/A N/A 9.859±0.68 4.948±0.00 3.125±0.00 N/A 4.372±0.00 N/A N/A N/A
ENSDART00000109497 N/A N/A N/A 3.037±1.18 N/A N/A 59.506±0.00 2.383±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000144246 N/A N/A N/A 6.505±3.13 N/A N/A 25.345±12.91 14.393±7.33 N/A N/A N/A N/A N/A N/A
ENSDARG00000007461 ENSDART00000088908 N/A N/A N/A 4.943±1.53 N/A N/A 1.825±0.77 0.512±0.27 N/A N/A 0.842±0.00 N/A N/A N/A
ENSDART00000140403 N/A N/A N/A N/A N/A N/A 0.635±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000063414 ENSDART00000092648 N/A N/A N/A 8.069±5.36 N/A N/A 5.454±4.72 3.087±1.35 0.234±0.00 N/A 0.303±0.00 N/A N/A N/A
ENSDARG00000087650 ENSDART00000122384 N/A N/A N/A 3.724±0.76 N/A N/A 1.224±0.57 1.864±0.00 0.380±0.00 N/A 0.204±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020121 ENSMUST00000020322 0.798±0.24 0.114±0.00 N/A 10.380±6.08 0.673±0.11 N/A 0.273±0.04 0.263±0.00 0.089±0.03 0.839±0.42 0.098±0.05 0.796±0.10 1.146±0.83 0.622±0.13
ENSMUST00000081688 1.891±0.93 N/A 1.160±0.09 N/A 0.531±0.22 1.605±0.42 0.186±0.05 0.841±0.16 0.266±0.08 1.145±0.37 N/A 1.003±0.38 2.573±0.56 0.489±0.00
ENSMUST00000161156 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161996 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.02 N/A 0.081±0.00 N/A N/A 10.183±3.62
ENSMUST00000162710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034620 ENSMUST00000038772 4.006±0.47 3.037±0.45 4.167±1.87 4.131±1.88 2.552±1.24 1.878±0.46 2.728±0.34 2.926±0.48 2.315±0.96 2.250±0.54 10.710±1.50 5.376±4.41 14.912±5.19 1.210±0.46
ENSMUST00000125506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135083 N/A 6.359±2.72 N/A N/A 2.379±0.15 2.639±0.30 N/A N/A 1.543±0.34 N/A N/A 5.329±1.73 N/A N/A
ENSMUST00000140299 1.211±0.33 5.513±1.09 0.850±0.26 0.705±0.12 1.207±0.55 1.853±0.28 0.406±0.12 0.719±0.43 0.527±0.17 1.763±0.33 0.591±0.15 2.412±1.68 0.902±0.17 0.235±0.08
ENSMUST00000141057 N/A N/A N/A 1.968±0.00 N/A N/A N/A N/A 2.210±0.33 N/A 4.167±0.51 11.530±0.27 14.193±6.49 2.389±0.00

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