C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006Z2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130726-ENSG00000130724 CGP 9606 19:58544091-58555124
GeneTranscriptPositionBiotype
ENSG00000130724 (CHMP2A)
charged multivesicular body protein 2A 		ENST00000312547 (CHMP2A-001) 58551566-58555124 protein_coding
ENST00000596708 (CHMP2A-007) 58552055-58554960 protein_coding
ENST00000597209 (CHMP2A-008) 58552098-58554993 retained_intron
ENST00000597848 (CHMP2A-006) 58554046-58554990 protein_coding
ENST00000600006 (CHMP2A-009) 58551566-58554097 protein_coding
ENST00000600118 (CHMP2A-003) 58551566-58554638 protein_coding
ENST00000600804 (CHMP2A-005) 58553748-58555090 retained_intron
ENST00000601220 (CHMP2A-004) 58551566-58554973 protein_coding
ENSG00000130726 (TRIM28)
tripartite motif containing 28 		ENST00000253024 (TRIM28-001) 58544469-58550716 protein_coding
ENST00000341753 (TRIM28-003) 58544473-58550715 protein_coding
ENST00000593582 (TRIM28-004) 58544091-58547626 protein_coding
ENST00000594806 (TRIM28-005) 58544457-58547888 protein_coding
ENST00000595028 (TRIM28-012) 58548869-58549444 retained_intron
ENST00000595974 (TRIM28-013) 58549450-58550403 retained_intron
ENST00000597136 (TRIM28-002) 58548294-58550722 protein_coding
ENST00000597172 (TRIM28-009) 58547559-58548530 retained_intron
ENST00000597423 (TRIM28-007) 58547140-58548172 retained_intron
ENST00000597618 (TRIM28-008) 58547135-58547906 retained_intron
ENST00000597968 (TRIM28-006) 58545167-58545896 protein_coding
ENST00000597995 (TRIM28-010) 58547762-58549089 retained_intron
ENST00000598355 (TRIM28-015) 58549645-58550649 retained_intron
ENST00000600840 (TRIM28-014) 58549556-58550067 retained_intron
ENST00000601150 (TRIM28-011) 58547691-58549224 retained_intron
ENSG00000275924 (MIR6807)
microRNA 6807 		ENST00000621968 (MIR6807-201) 58550285-58550376 miRNA
CIL_0006Z2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005566-ENSMUSG00000033916 CGP 10090 7:13024152-13034777
GeneTranscriptPositionBiotype
ENSMUSG00000005566 (Trim28)
tripartite motif-containing 28 		ENSMUST00000005705 (Trim28-001) 13024152-13031035 protein_coding
ENSMUST00000123603 (Trim28-005) 13028405-13029365 retained_intron
ENSMUST00000123778 (Trim28-009) 13030372-13031032 retained_intron
ENSMUST00000125136 (Trim28-007) 13029091-13029995 retained_intron
ENSMUST00000128951 (Trim28-004) 13028021-13029599 retained_intron
ENSMUST00000129122 (Trim28-008) 13029704-13030347 retained_intron
ENSMUST00000142421 (Trim28-002) 13027617-13029124 retained_intron
ENSMUST00000148354 (Trim28-003) 13027829-13028502 retained_intron
ENSMUST00000149061 (Trim28-006) 13028880-13029926 retained_intron
ENSMUSG00000033916 (Chmp2a)
charged multivesicular body protein 2A 		ENSMUST00000005711 (Chmp2a-201) 13032006-13034777 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Z2_0001ENSG00000130724ENST00000312547ENST00000596708ENST00000597209ENST00000597848ENST00000600006ENST00000600118ENST00000600804ENST00000601220ENSG00000130726ENST00000253024ENST00000341753ENST00000593582ENST00000594806ENST00000595028ENST00000595974ENST00000597136ENST00000597172ENST00000597423ENST00000597618ENST00000597968ENST00000597995ENST00000598355ENST00000600840ENST00000601150ENSG00000275924ENST00000621968CIL_0006Z2_0002ENSMUSG00000005566ENSMUST00000005705ENSMUST00000123603ENSMUST00000123778ENSMUST00000125136ENSMUST00000128951ENSMUST00000129122ENSMUST00000142421ENSMUST00000148354ENSMUST00000149061ENSMUSG00000033916ENSMUST00000005711
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006Z2_0001ENSG00000130724ENST00000312547ENST00000596708ENST00000597848ENST00000601220ENSG00000130726ENST00000253024ENST00000341753ENST00000594806ENST00000597136ENST00000597172ENST00000597618ENST00000597995ENST00000598355ENSG00000275924ENST00000621968CIL_0006Z2_0002ENSMUSG00000005566ENSMUST00000005705ENSMUST00000123778ENSMUST00000128951ENSMUSG00000033916ENSMUST00000005711
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130724 ENST00000312547 79.454±0.00 84.412±0.00 4.358±0.00 44.274±39.57 53.642±44.47 43.370±37.97 19.992±17.76 60.756±53.21 27.070±20.04 41.385±35.17 65.134±0.00 42.169±33.00 89.024±29.33 45.833±30.92
ENST00000596708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.858±0.00 51.542±0.00 35.142±0.00
ENST00000597209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 104.716±0.00 232.487±0.00 96.690±0.00
ENST00000600006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601220 31.576±0.00 20.739±0.00 4.516±0.00 19.067±3.98 15.793±0.00 11.144±0.00 9.493±2.14 15.735±1.39 14.076±11.15 14.915±0.00 23.343±7.24 15.768±10.77 29.740±7.18 17.200±2.33
ENSG00000130726 ENST00000253024 20.511±0.00 27.634±0.00 N/A 12.737±11.40 14.850±12.56 29.798±27.58 14.778±13.10 39.926±0.00 10.356±7.14 24.220±22.79 38.512±35.91 76.163±38.91 42.951±33.83 50.574±17.66
ENST00000341753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.668±0.00 N/A N/A
ENST00000593582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594806 N/A N/A 3.291±0.00 3.813±0.00 2.922±0.00 3.737±0.00 N/A 3.863±0.00 5.030±0.00 2.859±0.00 N/A N/A 33.980±0.00 46.344±0.00
ENST00000595028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597136 34.785±0.00 52.078±0.00 N/A 23.245±0.00 40.618±0.00 53.591±0.00 N/A 26.479±0.00 8.226±0.00 32.865±0.00 45.421±0.00 70.492±15.57 37.263±14.87 62.940±23.07
ENST00000597172 N/A N/A N/A N/A 3.352±0.00 3.930±0.00 N/A N/A 3.684±0.00 N/A N/A 2.717±0.00 N/A N/A
ENST00000597423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597618 N/A N/A 1.852±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597995 N/A N/A N/A N/A N/A 2.525±0.00 N/A 1.691±0.00 N/A 2.485±0.00 N/A 3.151±0.00 N/A N/A
ENST00000598355 N/A 52.704±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275924 ENST00000621968 N/A 2.913±0.00 N/A 1.012±0.00 0.674±0.00 1.486±0.00 N/A N/A 0.681±0.00 N/A N/A 16.147±15.29 N/A 1.736±0.57
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005566 ENSMUST00000005705 58.153±25.79 53.452±6.90 45.327±1.19 96.528±48.16 43.182±8.57 49.572±1.72 18.792±3.92 28.942±3.32 36.659±22.93 41.489±0.85 13.313±1.08 120.245±27.35 58.685±23.57 107.346±31.02
ENSMUST00000123603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123778 N/A N/A N/A N/A 48.270±3.60 N/A 23.384±0.29 36.726±3.13 27.205±0.00 N/A N/A 124.212±0.00 95.800±25.42 N/A
ENSMUST00000125136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128951 N/A N/A N/A 9.349±0.00 N/A N/A N/A N/A N/A N/A N/A 22.423±0.00 N/A N/A
ENSMUST00000129122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033916 ENSMUST00000005711 55.005±5.42 35.350±1.77 102.251±13.42 103.388±47.67 38.192±2.65 64.012±6.46 39.863±0.76 67.743±6.94 64.170±20.12 57.412±3.61 39.745±1.75 67.774±56.52 176.251±110.19 86.037±80.03

Loading