C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00071O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163749-ENSG00000138771 CGP 9606 4:76312997-76783253
GeneTranscriptPositionBiotype
ENSG00000138771 (SHROOM3)
shroom family member 3 		ENST00000296043 (SHROOM3-001) 76435100-76783253 protein_coding
ENST00000466541 (SHROOM3-006) 76436146-76559576 processed_transcript
ENST00000469923 (SHROOM3-007) 76555614-76754586 processed_transcript
ENST00000473602 (SHROOM3-013) 76709767-76738993 processed_transcript
ENST00000481002 (SHROOM3-008) 76586255-76738835 processed_transcript
ENST00000484236 (SHROOM3-011) 76586313-76587265 processed_transcript
ENST00000485780 (SHROOM3-010) 76586286-76645645 processed_transcript
ENST00000486758 (SHROOM3-004) 76689571-76742130 retained_intron
ENST00000490690 (SHROOM3-009) 76586140-76645354 processed_transcript
ENST00000497440 (SHROOM3-012) 76436112-76645645 processed_transcript
ENSG00000163749 (CCDC158)
coiled-coil domain containing 158 		ENST00000388914 (CCDC158-002) 76313002-76407305 protein_coding
ENST00000434846 (CCDC158-005) 76375177-76407323 protein_coding
ENST00000504667 (CCDC158-009) 76312997-76367634 retained_intron
ENST00000504868 (CCDC158-006) 76396269-76421868 processed_transcript
ENST00000509851 (CCDC158-008) 76384379-76421843 retained_intron
ENSG00000231335 (AC107072.2)
 ENST00000425645 (AC107072.2-001) 76637623-76644368 sense_intronic
ENSG00000233860 (RP11-359D14.2)
 ENST00000452412 (RP11-359D14.2-001) 76756960-76758474 antisense
ENSG00000240426 (RP11-356M17.1)
 ENST00000485172 (RP11-356M17.1-001) 76401251-76401569 processed_pseudogene
ENSG00000249278 (RP11-688H10.1)
 ENST00000513916 (RP11-688H10.1-001) 76509284-76509719 processed_pseudogene
ENSG00000249858 (SNX5P1)
sorting nexin 5 pseudogene 1 		ENST00000505757 (SNX5P1-001) 76344550-76345590 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00071O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050050-ENSMUSG00000029381 CGP 10090 5:92607954-92965318
GeneTranscriptPositionBiotype
ENSMUSG00000029381 (Shroom3)
shroom family member 3 		ENSMUST00000113051 (Shroom3-005) 92897993-92965308 protein_coding
ENSMUST00000113054 (Shroom3-003) 92809378-92965318 protein_coding
ENSMUST00000113055 (Shroom3-001) 92683435-92965314 protein_coding
ENSMUST00000168878 (Shroom3-002) 92683625-92964762 protein_coding
ENSMUST00000172706 (Shroom3-006) 92925407-92940455 protein_coding
ENSMUST00000172752 (Shroom3-007) 92962039-92964790 retained_intron
ENSMUST00000172849 (Shroom3-004) 92809470-92835836 processed_transcript
ENSMUSG00000050050 (Ccdc158)
coiled-coil domain containing 158 		ENSMUST00000060930 (Ccdc158-001) 92608253-92675125 protein_coding
ENSMUST00000136004 (Ccdc158-003) 92607954-92612503 retained_intron
ENSMUST00000150359 (Ccdc158-004) 92652054-92675271 protein_coding
ENSMUST00000151180 (Ccdc158-002) 92652054-92675265 protein_coding
ENSMUSG00000092266 (Gm20500)
predicted gene 20500 		ENSMUST00000174621 (Gm20500-001) 92736205-92737442 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071O_0001ENSG00000138771ENST00000296043ENST00000466541ENST00000469923ENST00000473602ENST00000481002ENST00000484236ENST00000485780ENST00000486758ENST00000490690ENST00000497440ENSG00000163749ENST00000388914ENST00000434846ENST00000504667ENST00000504868ENST00000509851ENSG00000231335ENST00000425645ENSG00000233860ENST00000452412ENSG00000240426ENST00000485172ENSG00000249278ENST00000513916ENSG00000249858ENST00000505757CIL_00071O_0002ENSMUSG00000029381ENSMUST00000113051ENSMUST00000113054ENSMUST00000113055ENSMUST00000168878ENSMUST00000172706ENSMUST00000172752ENSMUST00000172849ENSMUSG00000050050ENSMUST00000060930ENSMUST00000136004ENSMUST00000150359ENSMUST00000151180ENSMUSG00000092266ENSMUST00000174621
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00071O_0001ENSG00000138771ENST00000296043ENST00000469923ENST00000473602ENST00000486758ENSG00000163749ENST00000388914ENST00000434846ENST00000504667ENST00000504868ENSG00000231335ENST00000425645ENSG00000233860ENST00000452412ENSG00000240426ENST00000485172ENSG00000249278ENST00000513916ENSG00000249858ENST00000505757CIL_00071O_0002ENSMUSG00000029381ENSMUST00000113051ENSMUST00000113054ENSMUST00000113055ENSMUST00000168878ENSMUST00000172752ENSMUSG00000050050ENSMUST00000060930ENSMUST00000136004ENSMUST00000150359ENSMUST00000151180ENSMUSG00000092266ENSMUST00000174621
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138771 ENST00000296043 N/A N/A N/A 0.548±0.18 N/A N/A N/A 0.953±0.00 N/A N/A 0.005±0.00 N/A N/A N/A
ENST00000466541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00 N/A N/A N/A
ENST00000473602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A
ENST00000481002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486758 N/A N/A N/A 0.634±0.00 4.450±0.00 6.531±0.00 N/A 2.667±0.00 3.671±0.00 1.589±0.00 0.120±0.00 6.373±0.00 N/A N/A
ENST00000490690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163749 ENST00000388914 N/A N/A 0.453±0.00 N/A N/A N/A N/A N/A 0.068±0.00 0.188±0.00 N/A 0.014±0.00 0.009±0.00 11.662±2.81
ENST00000434846 N/A N/A N/A N/A 0.037±0.00 N/A 0.097±0.00 N/A 0.058±0.00 N/A N/A 0.118±0.00 N/A N/A
ENST00000504667 0.089±0.00 0.076±0.00 N/A N/A 0.154±0.00 0.077±0.00 0.016±0.00 0.278±0.00 0.033±0.00 N/A 0.031±0.00 0.029±0.01 0.034±0.02 N/A
ENST00000504868 N/A N/A N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231335 ENST00000425645 0.078±0.00 0.249±0.00 N/A 0.356±0.00 0.343±0.00 N/A 0.523±0.00 0.170±0.00 N/A N/A N/A 0.708±0.51 N/A 0.075±0.00
ENSG00000233860 ENST00000452412 0.178±0.00 N/A 1.348±0.00 0.023±0.00 0.222±0.00 0.376±0.00 0.020±0.00 N/A 0.365±0.00 0.363±0.00 N/A 0.234±0.00 0.155±0.00 0.081±0.02
ENSG00000240426 ENST00000485172 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249278 ENST00000513916 N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A
ENSG00000249858 ENST00000505757 N/A N/A N/A N/A 0.222±0.00 0.333±0.00 N/A N/A N/A 0.238±0.00 0.030±0.00 N/A N/A 0.055±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029381 ENSMUST00000113051 1.913±0.24 1.118±0.25 7.892±2.06 1.437±0.13 2.598±1.12 27.840±2.53 1.546±0.41 0.767±0.12 0.260±0.11 5.569±0.60 0.051±0.02 3.382±0.99 2.731±1.22 3.021±0.40
ENSMUST00000113054 0.945±0.29 N/A 2.125±0.26 0.633±0.00 1.000±0.39 13.258±2.44 3.853±1.22 4.806±0.68 0.193±0.10 15.001±2.19 N/A 9.228±1.95 1.309±0.30 3.934±0.88
ENSMUST00000113055 0.925±0.01 0.212±0.00 N/A 0.505±0.02 N/A N/A N/A 1.224±0.43 0.812±0.29 4.534±0.28 N/A 1.459±0.00 N/A N/A
ENSMUST00000168878 N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A 0.191±0.00 N/A 0.070±0.03 4.158±0.00 N/A 2.053±1.42
ENSMUST00000172706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172752 N/A N/A N/A 0.675±0.00 N/A N/A N/A N/A N/A N/A 0.107±0.04 N/A N/A 5.704±0.00
ENSMUST00000172849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050050 ENSMUST00000060930 N/A 0.039±0.01 0.094±0.00 0.039±0.02 0.040±0.01 0.033±0.01 0.010±0.00 0.030±0.00 0.027±0.01 0.091±0.05 0.021±0.01 0.363±0.23 0.126±0.09 18.723±14.96
ENSMUST00000136004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A 0.242±0.06 N/A
ENSMUST00000150359 0.048±0.01 0.062±0.06 0.317±0.13 0.053±0.00 0.042±0.01 N/A 0.029±0.00 0.150±0.04 0.061±0.06 N/A 0.018±0.01 0.462±0.20 0.052±0.04 4.710±0.22
ENSMUST00000151180 0.048±0.01 0.069±0.05 N/A 0.198±0.00 0.060±0.04 0.056±0.01 0.029±0.00 0.108±0.00 0.068±0.05 N/A 0.018±0.01 0.785±0.27 0.016±0.01 N/A
ENSMUSG00000092266 ENSMUST00000174621 N/A N/A 0.054±0.00 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.17

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