C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00072Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000026165-ENSDARG00000011247 CGP 7955 24:29686546-29889548
GeneTranscriptPositionBiotype
ENSDARG00000011247 (rnpc3)
RNA-binding region (RNP1, RRM) containing 3 		ENSDART00000017427 (rnpc3-001) 29857725-29889548 protein_coding
ENSDART00000122175 (rnpc3-201) 29859041-29889511 protein_coding
ENSDART00000153761 (rnpc3-003) 29875614-29889512 protein_coding
ENSDARG00000026165 (col11a1a)
collagen, type XI, alpha 1a 		ENSDART00000003503 (col11a1a-001) 29686546-29815828 protein_coding
ENSDART00000042065 (col11a1a-002) 29687357-29815776 protein_coding
ENSDARG00000097841 (si:ch211-266k13.3)
si:ch211-266k13.3 		ENSDART00000153933 (si:ch211-266k13.3-001) 29573619-29578464 antisense
ENSDART00000154443 (si:ch211-266k13.3-003) 29614439-29701893 antisense
ENSDART00000154555 (si:ch211-266k13.3-002) 29573659-29701227 antisense
CIL_00072Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000060718-ENSG00000185946 CGP 9606 1:102876467-103555239
GeneTranscriptPositionBiotype
ENSG00000060718 (COL11A1)
collagen, type XI, alpha 1 		ENST00000353414 (COL11A1-201) 102876468-103108496 protein_coding
ENST00000358392 (COL11A1-202) 102876467-103108496 protein_coding
ENST00000370096 (COL11A1-001) 102876467-103108491 protein_coding
ENST00000427239 (COL11A1-002) 103008473-103108178 protein_coding
ENST00000447608 (COL11A1-003) 103030901-103082859 protein_coding
ENST00000461720 (COL11A1-004) 103001014-103008493 processed_transcript
ENST00000465209 (COL11A1-006) 102961745-102962684 retained_intron
ENST00000470170 (COL11A1-007) 102877717-102880018 retained_intron
ENST00000475980 (COL11A1-005) 103001437-103004481 processed_transcript
ENST00000512756 (COL11A1-008) 102877951-103108479 protein_coding
ENSG00000185946 (RNPC3)
RNA-binding region (RNP1, RRM) containing 3 		ENST00000423855 (RNPC3-008) 103525971-103555239 protein_coding
ENST00000524631 (RNPC3-001) 103525691-103553343 protein_coding
ENST00000524641 (RNPC3-006) 103541361-103547035 protein_coding
ENST00000525323 (RNPC3-007) 103546927-103551263 retained_intron
ENST00000527062 (RNPC3-005) 103525757-103541475 protein_coding
ENST00000531883 (RNPC3-004) 103525697-103535441 protein_coding
ENST00000532117 (RNPC3-009) 103551724-103553714 nonsense_mediated_decay
ENST00000533099 (RNPC3-003) 103525699-103555112 protein_coding
ENST00000533834 (RNPC3-002) 103537388-103552778 retained_intron
ENSG00000222069 (RN7SKP285)
RNA, 7SK small nuclear pseudogene 285 		ENST00000410137 (RN7SKP285-201) 103523562-103523879 misc_RNA
ENSG00000224613 (RP11-153F1.1)
 ENST00000444810 (RP11-153F1.1-001) 103418079-103525483 antisense
ENST00000447322 (RP11-153F1.1-002) 103418754-103525461 antisense
ENSG00000234257 (SOD2P1)
superoxide dismutase 2, mitochondrial pseudogene 1 		ENST00000396543 (SOD2P1-001) 103100143-103100704 processed_pseudogene
ENSG00000240038 (AMY2B)
amylase, alpha 2B (pancreatic) 		ENST00000361355 (AMY2B-001) 103554700-103579529 protein_coding
ENST00000435302 (AMY2B-004) 103561757-103572229 protein_coding
ENST00000453959 (AMY2B-005) 103565031-103572200 protein_coding
ENST00000462971 (AMY2B-006) 103575315-103575781 processed_transcript
ENST00000477657 (AMY2B-002) 103553815-103579530 nonsense_mediated_decay
ENST00000481821 (AMY2B-007) 103577387-103579534 processed_transcript
ENST00000491397 (AMY2B-003) 103568334-103579530 processed_transcript
ENST00000610648 (AMY2B-201) 103571100-103579530 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072Z_0001ENSDARG00000011247ENSDART00000017427ENSDART00000122175ENSDART00000153761ENSDARG00000026165ENSDART00000003503ENSDART00000042065ENSDARG00000097841ENSDART00000153933ENSDART00000154443ENSDART00000154555CIL_00072Z_0002ENSG00000060718ENST00000353414ENST00000358392ENST00000370096ENST00000427239ENST00000447608ENST00000461720ENST00000465209ENST00000470170ENST00000475980ENST00000512756ENSG00000185946ENST00000423855ENST00000524631ENST00000524641ENST00000525323ENST00000527062ENST00000531883ENST00000532117ENST00000533099ENST00000533834ENSG00000222069ENST00000410137ENSG00000224613ENST00000444810ENST00000447322ENSG00000234257ENST00000396543ENSG00000240038ENST00000361355ENST00000435302ENST00000453959ENST00000462971ENST00000477657ENST00000481821ENST00000491397ENST00000610648
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00072Z_0001ENSDARG00000011247ENSDART00000017427ENSDART00000122175ENSDART00000153761ENSDARG00000026165ENSDART00000003503ENSDART00000042065ENSDARG00000097841ENSDART00000153933ENSDART00000154555CIL_00072Z_0002ENSG00000060718ENST00000353414ENST00000370096ENST00000427239ENST00000461720ENST00000470170ENST00000512756ENSG00000185946ENST00000423855ENST00000524631ENST00000527062ENST00000533099ENST00000533834ENSG00000222069ENST00000410137ENSG00000224613ENST00000444810ENST00000447322ENSG00000234257ENST00000396543ENSG00000240038ENST00000361355ENST00000435302ENST00000477657ENST00000610648
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011247 ENSDART00000017427 N/A N/A N/A 1.366±0.00 N/A N/A 2.318±0.14 N/A 0.260±0.00 N/A N/A N/A N/A N/A
ENSDART00000122175 N/A N/A N/A 6.344±3.99 N/A N/A 1.297±0.29 2.290±0.00 0.281±0.00 N/A 2.426±0.00 N/A N/A N/A
ENSDART00000153761 N/A N/A N/A 7.335±1.63 N/A N/A 0.753±0.42 1.638±1.26 N/A N/A N/A N/A N/A N/A
ENSDARG00000026165 ENSDART00000003503 N/A N/A N/A 0.354±0.00 N/A N/A 0.025±0.01 0.095±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000042065 N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A 0.040±0.00 N/A N/A N/A
ENSDARG00000097841 ENSDART00000153933 N/A N/A N/A N/A N/A N/A N/A 0.895±0.00 0.138±0.00 N/A N/A N/A N/A N/A
ENSDART00000154443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000154555 N/A N/A N/A N/A N/A N/A 0.320±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000060718 ENST00000353414 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A 0.339±0.00 0.086±0.00
ENST00000358392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000370096 N/A N/A N/A 0.383±0.10 0.924±0.52 N/A N/A N/A 0.081±0.00 N/A N/A 0.683±0.38 1.377±0.39 N/A
ENST00000427239 N/A N/A 0.041±0.00 N/A 1.287±0.00 N/A N/A 0.064±0.00 N/A 0.136±0.00 N/A N/A N/A N/A
ENST00000447608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461720 N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A 1.712±0.00
ENST00000465209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470170 N/A 0.014±0.00 N/A N/A 1.212±0.00 N/A N/A N/A N/A N/A N/A 2.084±0.72 1.858±0.00 0.849±0.58
ENST00000475980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512756 N/A N/A N/A 0.192±0.00 0.556±0.04 0.020±0.01 N/A 0.043±0.03 0.157±0.00 N/A 0.182±0.15 0.576±0.19 1.771±0.51 0.439±0.22
ENSG00000185946 ENST00000423855 N/A 2.069±0.00 N/A N/A 2.731±0.00 2.825±0.00 N/A 2.230±0.00 0.340±0.00 0.649±0.00 0.707±0.00 1.695±0.54 0.719±0.18 4.199±0.27
ENST00000524631 N/A N/A 5.537±0.00 N/A N/A N/A N/A 2.036±0.00 N/A N/A 2.383±0.00 3.011±0.00 N/A N/A
ENST00000524641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527062 N/A N/A N/A 36.069±0.00 N/A 14.866±0.00 8.090±0.00 N/A 15.939±0.00 20.458±0.00 5.812±0.00 4.878±0.00 5.695±0.00 18.218±0.00
ENST00000531883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533099 N/A 0.914±0.00 2.534±0.00 1.616±0.00 N/A 0.907±0.00 1.045±0.00 3.029±0.00 0.228±0.00 0.658±0.00 N/A 1.650±0.00 0.231±0.03 1.476±0.78
ENST00000533834 N/A N/A 2.649±0.00 N/A N/A N/A N/A N/A N/A 2.759±0.00 N/A N/A N/A N/A
ENSG00000222069 ENST00000410137 N/A 0.483±0.00 N/A N/A N/A N/A 0.100±0.00 0.159±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000224613 ENST00000444810 N/A N/A N/A 0.259±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.00 0.683±0.30
ENST00000447322 N/A N/A N/A 0.130±0.09 0.446±0.00 N/A 0.028±0.00 0.215±0.00 N/A 0.082±0.00 N/A 0.174±0.00 0.274±0.15 0.521±0.00
ENSG00000234257 ENST00000396543 N/A N/A N/A N/A 0.344±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240038 ENST00000361355 N/A N/A N/A 7.689±0.00 4.251±0.00 N/A 3.750±0.00 N/A 8.073±0.00 2.955±2.17 N/A 1.251±0.00 N/A N/A
ENST00000435302 N/A N/A N/A N/A N/A N/A N/A N/A 0.634±0.00 N/A N/A N/A N/A N/A
ENST00000453959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477657 0.718±0.00 1.732±0.00 N/A 1.793±0.00 1.302±0.00 2.854±0.00 N/A 1.884±0.42 0.435±0.00 0.632±0.00 0.435±0.00 2.102±0.22 0.364±0.10 0.668±0.00
ENST00000481821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610648 N/A N/A 10.319±0.00 14.826±0.00 N/A N/A N/A N/A 6.910±0.00 N/A 5.345±0.00 N/A N/A N/A

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