C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00074Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000159784-ENSG00000159840 CGP 9606 7:143353400-143391111
GeneTranscriptPositionBiotype
ENSG00000146904 (EPHA1)
EPH receptor A1 		ENST00000275815 (EPHA1-001) 143391112-143408892 protein_coding
ENST00000458129 (EPHA1-008) 143390289-143391391 processed_transcript
ENST00000465208 (EPHA1-006) 143394210-143395601 retained_intron
ENST00000479459 (EPHA1-004) 143397481-143398712 retained_intron
ENST00000488068 (EPHA1-002) 143391411-143408805 retained_intron
ENST00000494989 (EPHA1-005) 143394807-143396681 retained_intron
ENST00000497891 (EPHA1-003) 143400826-143407650 retained_intron
ENSG00000159784 (FAM131B)
family with sequence similarity 131, member B 		ENST00000409222 (FAM131B-004) 143353822-143362055 protein_coding
ENST00000409346 (FAM131B-002) 143353401-143362725 protein_coding
ENST00000409408 (FAM131B-005) 143353402-143361802 protein_coding
ENST00000409578 (FAM131B-003) 143353401-143362693 protein_coding
ENST00000410085 (FAM131B-006) 143353401-143359757 nonsense_mediated_decay
ENST00000443739 (FAM131B-001) 143353400-143362752 protein_coding
ENST00000519161 (FAM131B-007) 143358887-143362770 retained_intron
ENST00000519279 (FAM131B-008) 143356971-143362632 nonsense_mediated_decay
ENST00000521347 (FAM131B-009) 143357281-143362080 nonsense_mediated_decay
ENSG00000159840 (ZYX)
zyxin 		ENST00000322764 (ZYX-001) 143381080-143391111 protein_coding
ENST00000354434 (ZYX-006) 143381575-143391109 protein_coding
ENST00000392910 (ZYX-007) 143381907-143391109 protein_coding
ENST00000436448 (ZYX-009) 143382850-143388500 nonsense_mediated_decay
ENST00000446634 (ZYX-003) 143383000-143388896 protein_coding
ENST00000449630 (ZYX-005) 143381295-143382925 protein_coding
ENST00000457235 (ZYX-010) 143381361-143382676 protein_coding
ENST00000468083 (ZYX-002) 143381360-143383235 retained_intron
ENST00000477373 (ZYX-008) 143382028-143383240 processed_transcript
ENST00000497119 (ZYX-004) 143387889-143388597 retained_intron
ENSG00000232533 (AC093673.5)
 ENST00000429630 (AC093673.5-001) 143379692-143380495 antisense
ENSG00000272619 (RP11-563K23.1)
 ENST00000609674 (RP11-563K23.1-001) 143363899-143364229 lincRNA
ENSG00000278449 (MIR6892)
microRNA 6892 		ENST00000612346 (MIR6892-201) 143382686-143382800 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00074Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029861-ENSMUSG00000029860 CGP 10090 6:42315312-42360146
GeneTranscriptPositionBiotype
ENSMUSG00000029859 (Epha1)
Eph receptor A1 		ENSMUST00000073387 (Epha1-201) 42358487-42373268 protein_coding
ENSMUSG00000029860 (Zyx)
zyxin 		ENSMUST00000070635 (Zyx-201) 42349828-42358392 protein_coding
ENSMUST00000164375 (Zyx-202) 42350058-42360146 protein_coding
ENSMUSG00000029861 (Fam131b)
family with sequence similarity 131, member B 		ENSMUST00000031891 (Fam131b-002) 42315312-42324640 protein_coding
ENSMUST00000095974 (Fam131b-003) 42315313-42324592 protein_coding
ENSMUST00000143278 (Fam131b-001) 42315312-42324643 protein_coding
ENSMUSG00000029862 (Clcn1)
chloride channel 1 		ENSMUST00000031894 (Clcn1-001) 42286685-42314656 protein_coding
ENSMUST00000114684 (Clcn1-008) 42298900-42315756 protein_coding
ENSMUST00000163235 (Clcn1-009) 42310145-42313064 nonsense_mediated_decay
ENSMUST00000163936 (Clcn1-003) 42286856-42314178 protein_coding
ENSMUST00000164091 (Clcn1-007) 42286767-42314178 nonsense_mediated_decay
ENSMUST00000165780 (Clcn1-006) 42286856-42314178 nonsense_mediated_decay
ENSMUST00000168660 (Clcn1-005) 42286866-42313957 nonsense_mediated_decay
ENSMUST00000169024 (Clcn1-004) 42286856-42314229 nonsense_mediated_decay
ENSMUST00000169902 (Clcn1-010) 42312492-42313344 retained_intron
ENSMUST00000170028 (Clcn1-002) 42286856-42314178 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00074Q_0001ENSG00000146904ENST00000275815ENST00000458129ENST00000465208ENST00000479459ENST00000488068ENST00000494989ENST00000497891ENSG00000159784ENST00000409222ENST00000409346ENST00000409408ENST00000409578ENST00000410085ENST00000443739ENST00000519161ENST00000519279ENST00000521347ENSG00000159840ENST00000322764ENST00000354434ENST00000392910ENST00000436448ENST00000446634ENST00000449630ENST00000457235ENST00000468083ENST00000477373ENST00000497119ENSG00000232533ENST00000429630ENSG00000272619ENST00000609674ENSG00000278449ENST00000612346CIL_00074Q_0002ENSMUSG00000029859ENSMUST00000073387ENSMUSG00000029860ENSMUST00000070635ENSMUST00000164375ENSMUSG00000029861ENSMUST00000031891ENSMUST00000095974ENSMUST00000143278ENSMUSG00000029862ENSMUST00000031894ENSMUST00000114684ENSMUST00000163235ENSMUST00000163936ENSMUST00000164091ENSMUST00000165780ENSMUST00000168660ENSMUST00000169024ENSMUST00000169902ENSMUST00000170028
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00074Q_0001ENSG00000146904ENST00000275815ENST00000488068ENST00000497891ENSG00000159784ENST00000409222ENST00000409346ENST00000409578ENST00000410085ENST00000443739ENST00000519279ENST00000521347ENSG00000159840ENST00000322764ENST00000354434ENST00000392910ENST00000449630ENST00000468083ENSG00000232533ENST00000429630ENSG00000272619ENST00000609674ENSG00000278449ENST00000612346CIL_00074Q_0002ENSMUSG00000029859ENSMUST00000073387ENSMUSG00000029860ENSMUST00000070635ENSMUST00000164375ENSMUSG00000029861ENSMUST00000031891ENSMUST00000095974ENSMUST00000143278ENSMUSG00000029862ENSMUST00000031894ENSMUST00000114684ENSMUST00000163235ENSMUST00000163936ENSMUST00000164091ENSMUST00000168660ENSMUST00000169024ENSMUST00000169902
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146904 ENST00000275815 N/A N/A N/A N/A 0.792±0.00 1.459±0.00 N/A 2.867±0.00 3.269±0.00 0.770±0.00 N/A 1.380±0.00 N/A N/A
ENST00000458129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488068 N/A N/A 0.484±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.549±0.00 N/A N/A N/A
ENSG00000159784 ENST00000409222 0.373±0.00 0.139±0.00 N/A N/A N/A N/A 0.024±0.00 0.069±0.00 0.153±0.11 0.637±0.00 N/A 0.100±0.02 0.112±0.00 N/A
ENST00000409346 N/A N/A N/A 21.377±0.00 N/A 0.409±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409578 0.258±0.00 N/A N/A 12.642±0.00 0.255±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410085 N/A 0.097±0.00 0.046±0.00 5.391±0.00 0.368±0.00 0.980±0.68 0.047±0.02 N/A N/A 0.037±0.00 N/A 0.333±0.13 0.138±0.04 N/A
ENST00000443739 N/A N/A N/A 4.565±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519279 N/A N/A N/A N/A N/A N/A 0.264±0.00 N/A N/A 0.354±0.00 N/A N/A N/A N/A
ENST00000521347 N/A N/A N/A N/A 0.409±0.00 N/A N/A N/A 0.238±0.00 0.146±0.00 N/A N/A N/A N/A
ENSG00000159840 ENST00000322764 48.751±0.00 36.106±0.00 0.705±0.00 4.099±3.49 21.033±18.79 42.622±0.00 11.947±0.00 25.087±0.00 4.175±3.29 39.012±37.03 9.124±0.00 90.702±94.35 58.977±35.69 28.769±0.00
ENST00000354434 129.611±0.00 99.227±0.00 N/A 28.853±0.00 90.680±0.00 124.167±0.00 21.941±0.00 29.814±0.00 10.655±0.00 89.652±88.54 15.290±14.20 98.582±35.69 69.501±4.09 81.924±15.87
ENST00000392910 N/A 31.792±0.00 N/A 9.784±8.89 N/A N/A 0.232±0.00 2.624±0.00 1.411±0.00 N/A N/A 48.558±0.00 38.051±0.00 19.741±0.00
ENST00000436448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449630 N/A N/A N/A N/A N/A N/A N/A N/A 3.701±0.00 N/A N/A N/A N/A N/A
ENST00000457235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468083 N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000477373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232533 ENST00000429630 0.466±0.00 5.371±0.00 N/A 4.810±0.00 2.091±0.00 4.026±3.95 0.324±0.15 3.505±1.96 0.412±0.06 4.253±4.02 0.402±0.00 3.327±2.64 3.435±2.46 3.425±2.46
ENSG00000272619 ENST00000609674 N/A N/A N/A 2.505±0.71 N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A 0.132±0.00
ENSG00000278449 ENST00000612346 N/A 0.659±0.00 N/A 0.478±0.00 0.688±0.00 N/A N/A N/A N/A N/A N/A 7.841±7.41 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029859 ENSMUST00000073387 N/A N/A 14.794±0.95 N/A N/A 14.296±1.04 N/A 8.924±1.03 10.902±4.70 17.035±0.83 N/A 3.572±0.00 8.500±2.50 N/A
ENSMUSG00000029860 ENSMUST00000070635 77.087±30.84 42.683±9.41 55.250±2.01 20.281±5.86 51.802±18.82 42.558±8.93 26.174±9.30 20.677±8.27 17.224±4.73 111.415±17.28 7.728±1.06 58.037±26.12 97.249±47.74 12.642±4.96
ENSMUST00000164375 N/A N/A 6.834±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029861 ENSMUST00000031891 N/A N/A 0.154±0.00 N/A 0.467±0.00 0.377±0.00 N/A N/A 0.048±0.00 0.297±0.00 N/A 0.329±0.12 N/A N/A
ENSMUST00000095974 0.608±0.23 0.089±0.07 0.152±0.00 13.466±0.00 0.427±0.00 0.149±0.02 N/A 0.033±0.00 0.066±0.04 N/A N/A 0.342±0.24 0.105±0.06 2.694±0.90
ENSMUST00000143278 1.617±0.96 N/A 0.456±0.00 9.062±5.02 0.992±0.01 0.288±0.07 N/A 0.034±0.00 0.045±0.00 0.262±0.06 N/A 0.434±0.02 0.062±0.02 1.268±0.00
ENSMUSG00000029862 ENSMUST00000031894 N/A 0.030±0.00 N/A N/A 3.611±1.07 N/A N/A 0.160±0.00 N/A 0.096±0.01 34.981±2.53 0.081±0.00 N/A N/A
ENSMUST00000114684 N/A 0.033±0.01 0.060±0.01 4.296±0.50 7.544±1.10 0.063±0.00 3.378±0.48 0.029±0.00 0.027±0.01 0.183±0.04 27.167±1.79 0.137±0.09 0.061±0.04 N/A
ENSMUST00000163235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.534±0.00 0.289±0.00 N/A
ENSMUST00000163936 N/A 0.030±0.01 N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A 0.068±0.00 N/A N/A
ENSMUST00000164091 N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000165780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168660 N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 0.052±0.00 N/A N/A 0.217±0.00 0.021±0.00 N/A
ENSMUST00000169024 N/A N/A N/A N/A N/A 0.179±0.00 1.218±0.00 N/A N/A N/A N/A N/A 0.025±0.00 N/A
ENSMUST00000169902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.06 N/A
ENSMUST00000170028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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