C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00075Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000056101-ENSDARG00000061204 CGP 7955 8:28919006-29112722
GeneTranscriptPositionBiotype
ENSDARG00000056101 (kcnd3)
potassium voltage-gated channel, Shal-related subfamily, member 3
ENSDART00000078533 (kcnd3-001) 28919006-29085760 protein_coding
ENSDART00000127984 (kcnd3-201) 28920248-29089412 protein_coding
ENSDARG00000061204 (ddx20)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
ENSDART00000087037 (ddx20-201) 29096170-29109765 protein_coding
ENSDART00000134226 (ddx20-001) 29096169-29112709 protein_coding
ENSDART00000136973 (ddx20-002) 29109221-29112722 protein_coding
ENSDART00000141120 (ddx20-003) 29106781-29108584 processed_transcript
CIL_00075Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040896-ENSMUSG00000027905 CGP 10090 3:105452330-105687574
GeneTranscriptPositionBiotype
ENSMUSG00000027905 (Ddx20)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
ENSMUST00000090680 (Ddx20-001) 105678270-105687574 protein_coding
ENSMUST00000132008 (Ddx20-002) 105681489-105687444 retained_intron
ENSMUSG00000040896 (Kcnd3)
potassium voltage-gated channel, Shal-related family, member 3
ENSMUST00000079169 (Kcnd3-201) 105458782-105669309 protein_coding
ENSMUST00000098761 (Kcnd3-002) 105452330-105674002 protein_coding
ENSMUST00000118360 (Kcnd3-001) 105453086-105669460 protein_coding
ENSMUST00000141694 (Kcnd3-003) 105452573-105667589 retained_intron
ENSMUST00000147209 (Kcnd3-004) 105669005-105669844 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00075Y_0001ENSDARG00000056101ENSDART00000078533ENSDART00000127984ENSDARG00000061204ENSDART00000087037ENSDART00000134226ENSDART00000136973ENSDART00000141120CIL_00075Y_0002ENSMUSG00000027905ENSMUST00000090680ENSMUST00000132008ENSMUSG00000040896ENSMUST00000079169ENSMUST00000098761ENSMUST00000118360ENSMUST00000141694ENSMUST00000147209
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00075Y_0001ENSDARG00000056101ENSDART00000078533ENSDART00000127984ENSDARG00000061204ENSDART00000087037CIL_00075Y_0002ENSMUSG00000027905ENSMUST00000090680ENSMUST00000132008ENSMUSG00000040896ENSMUST00000079169ENSMUST00000098761ENSMUST00000118360ENSMUST00000141694
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056101 ENSDART00000078533 N/A N/A N/A 3.305±0.00 N/A N/A 0.036±0.00 0.135±0.00 0.027±0.00 N/A N/A N/A N/A N/A
ENSDART00000127984 N/A N/A N/A 6.079±2.72 N/A N/A 0.067±0.03 0.072±0.02 N/A N/A N/A N/A N/A N/A
ENSDARG00000061204 ENSDART00000087037 N/A N/A N/A 2.456±1.53 N/A N/A 1.878±0.18 6.053±1.58 0.972±0.00 N/A 1.339±0.00 N/A N/A N/A
ENSDART00000134226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027905 ENSMUST00000090680 2.935±1.72 N/A 3.133±0.20 4.679±1.67 2.372±0.59 2.088±0.47 1.740±0.14 2.651±0.21 4.513±2.58 2.983±0.63 2.974±0.55 3.333±0.76 8.702±3.96 58.457±3.47
ENSMUST00000132008 2.080±1.69 30.479±12.83 N/A 1.178±0.08 9.447±8.24 5.153±3.28 0.406±0.04 1.419±1.58 1.776±0.85 6.490±7.15 N/A 30.429±20.09 N/A N/A
ENSMUSG00000040896 ENSMUST00000079169 2.832±2.73 0.951±0.41 N/A 3.748±1.27 0.111±0.04 2.711±0.30 2.143±0.25 1.353±0.28 0.022±0.01 0.463±0.07 0.020±0.00 9.348±1.20 N/A 1.098±0.39
ENSMUST00000098761 N/A 0.213±0.02 3.742±2.20 4.975±1.73 0.029±0.01 0.582±0.10 0.553±0.17 N/A 0.032±0.03 0.092±0.00 0.012±0.01 1.702±0.71 0.086±0.01 0.299±0.00
ENSMUST00000118360 0.050±0.00 N/A N/A N/A 0.097±0.00 0.798±0.02 N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A
ENSMUST00000141694 0.058±0.00 N/A N/A N/A 0.033±0.00 N/A 0.674±0.09 N/A 0.023±0.02 0.109±0.03 N/A 1.359±0.38 N/A 0.310±0.00
ENSMUST00000147209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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