Institute of Cardiovascular Regeneration Webtool Repository

Notice (8): Undefined index: CIL_00076C_0001 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00076C_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000064489' => 'MEF2BNB-MEF2B readthrough',
		'ENSG00000213999' => 'myocyte enhancer factor 2B',
		'ENSG00000254901' => 'MEF2B neighbor',
		'ENSMUSG00000002345' => 'RIKEN cDNA 2310045N01 gene',
		'ENSMUSG00000079033' => 'myocyte enhancer factor 2B'
	),
	'gene_name_arr' => array(
		'ENSG00000064489' => 'MEF2BNB-MEF2B',
		'ENSG00000213999' => 'MEF2B',
		'ENSG00000254901' => 'MEF2BNB',
		'ENSMUSG00000002345' => '2310045N01Rik',
		'ENSMUSG00000079033' => 'Mef2b'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 6 => 'Bladder',
		(int) 9 => 'Brain',
		(int) 11 => 'Breast',
		(int) 14 => 'Colon',
		(int) 18 => 'Heart',
		(int) 24 => 'Kidney',
		(int) 28 => 'Liver',
		(int) 35 => 'Lung',
		(int) 38 => 'Muscle',
		(int) 42 => 'Ovary',
		(int) 46 => 'Placenta',
		(int) 51 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 31,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000354191' => array(
			'start' => '19145569',
			'end' => '19192158',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-MEF2B-002'
		),
		'ENST00000444486' => array(
			'start' => '19145567',
			'end' => '19192131',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-MEF2B-004'
		),
		'ENST00000514819' => array(
			'start' => '19145584',
			'end' => '19192138',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-MEF2B-001'
		),
		'ENST00000602276' => array(
			'start' => '19146868',
			'end' => '19182347',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2BNB-MEF2B-008'
		),
		'ENST00000602424' => array(
			'start' => '19145585',
			'end' => '19182617',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-MEF2B-201'
		),
		'ENST00000602438' => array(
			'start' => '19149293',
			'end' => '19192147',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2BNB-MEF2B-006'
		),
		'ENST00000602689' => array(
			'start' => '19150686',
			'end' => '19192122',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-MEF2B-007'
		),
		'ENST00000602804' => array(
			'start' => '19145572',
			'end' => '19192158',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-MEF2B-003'
		),
		'ENST00000409224' => array(
			'start' => '19145568',
			'end' => '19170263',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-004'
		),
		'ENST00000409447' => array(
			'start' => '19145593',
			'end' => '19170289',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-006'
		),
		'ENST00000410050' => array(
			'start' => '19145569',
			'end' => '19170248',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-005'
		),
		'ENST00000424583' => array(
			'start' => '19145569',
			'end' => '19170245',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-001'
		),
		'ENST00000462498' => array(
			'start' => '19182623',
			'end' => '19192591',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2BNB-004'
		),
		'ENST00000462790' => array(
			'start' => '19176906',
			'end' => '19192589',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-001'
		),
		'ENST00000477565' => array(
			'start' => '19181882',
			'end' => '19192589',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-007'
		),
		'ENST00000488252' => array(
			'start' => '19176903',
			'end' => '19192412',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-005'
		),
		'ENST00000494489' => array(
			'start' => '19177008',
			'end' => '19192588',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2BNB-006'
		),
		'ENST00000585679' => array(
			'start' => '19176906',
			'end' => '19192139',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-013'
		),
		'ENST00000588208' => array(
			'start' => '19176932',
			'end' => '19186098',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-010'
		),
		'ENST00000591398' => array(
			'start' => '19182460',
			'end' => '19187027',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2BNB-009'
		),
		'ENST00000591566' => array(
			'start' => '19176904',
			'end' => '19180601',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2BNB-012'
		),
		'ENSMUST00000002418' => array(
			'start' => '70139499',
			'end' => '70147256',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => '2310045N01Rik-001'
		),
		'ENSMUST00000110139' => array(
			'start' => '70140277',
			'end' => '70147319',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => '2310045N01Rik-004'
		),
		'ENSMUST00000123760' => array(
			'start' => '70139713',
			'end' => '70145549',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => '2310045N01Rik-003'
		),
		'ENSMUST00000123976' => array(
			'start' => '70139707',
			'end' => '70145535',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => '2310045N01Rik-005'
		),
		'ENSMUST00000129668' => array(
			'start' => '70139723',
			'end' => '70147261',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => '2310045N01Rik-002'
		),
		'ENSMUST00000163756' => array(
			'start' => '70139711',
			'end' => '70167488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => '2310045N01Rik-006'
		),
		'ENSMUST00000110140' => array(
			'start' => '70152781',
			'end' => '70167487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-005'
		),
		'ENSMUST00000110141' => array(
			'start' => '70152781',
			'end' => '70167487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-004'
		),
		'ENSMUST00000110143' => array(
			'start' => '70152778',
			'end' => '70167488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-003'
		),
		'ENSMUST00000110146' => array(
			'start' => '70152778',
			'end' => '70167488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-002'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00076C_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00076C_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002345' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Heart',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Testis',
			(int) 9 => 'Adipose',
			(int) 10 => 'Adrenal',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Lung',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Testis',
			(int) 20 => 'Adipose',
			(int) 21 => 'Brain',
			(int) 22 => 'Colon',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Muscle',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Ovary',
			(int) 30 => 'Placenta'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000064489' => 'MEF2BNB-MEF2B readthrough',
	'ENSG00000213999' => 'myocyte enhancer factor 2B',
	'ENSG00000254901' => 'MEF2B neighbor',
	'ENSMUSG00000002345' => 'RIKEN cDNA 2310045N01 gene',
	'ENSMUSG00000079033' => 'myocyte enhancer factor 2B'
)
$gene_name_arr = array(
	'ENSG00000064489' => 'MEF2BNB-MEF2B',
	'ENSG00000213999' => 'MEF2B',
	'ENSG00000254901' => 'MEF2BNB',
	'ENSMUSG00000002345' => '2310045N01Rik',
	'ENSMUSG00000079033' => 'Mef2b'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00076C_0001',
			'tax_id' => '9606',
			'chromosome' => '19',
			'seq_start' => '19145567',
			'seq_end' => '19192158',
			'region_length' => '46591',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000064489-ENSG00000064489'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00076C_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '70139499',
			'seq_end' => '70167488',
			'region_length' => '27989',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000002345-ENSMUSG00000002345'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 6 => 'Bladder',
	(int) 9 => 'Brain',
	(int) 11 => 'Breast',
	(int) 14 => 'Colon',
	(int) 18 => 'Heart',
	(int) 24 => 'Kidney',
	(int) 28 => 'Liver',
	(int) 35 => 'Lung',
	(int) 38 => 'Muscle',
	(int) 42 => 'Ovary',
	(int) 46 => 'Placenta',
	(int) 51 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 31
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000354191' => array(
		'start' => '19145569',
		'end' => '19192158',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-MEF2B-002'
	),
	'ENST00000444486' => array(
		'start' => '19145567',
		'end' => '19192131',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-MEF2B-004'
	),
	'ENST00000514819' => array(
		'start' => '19145584',
		'end' => '19192138',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-MEF2B-001'
	),
	'ENST00000602276' => array(
		'start' => '19146868',
		'end' => '19182347',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2BNB-MEF2B-008'
	),
	'ENST00000602424' => array(
		'start' => '19145585',
		'end' => '19182617',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-MEF2B-201'
	),
	'ENST00000602438' => array(
		'start' => '19149293',
		'end' => '19192147',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2BNB-MEF2B-006'
	),
	'ENST00000602689' => array(
		'start' => '19150686',
		'end' => '19192122',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-MEF2B-007'
	),
	'ENST00000602804' => array(
		'start' => '19145572',
		'end' => '19192158',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-MEF2B-003'
	),
	'ENST00000409224' => array(
		'start' => '19145568',
		'end' => '19170263',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-004'
	),
	'ENST00000409447' => array(
		'start' => '19145593',
		'end' => '19170289',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-006'
	),
	'ENST00000410050' => array(
		'start' => '19145569',
		'end' => '19170248',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-005'
	),
	'ENST00000424583' => array(
		'start' => '19145569',
		'end' => '19170245',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-001'
	),
	'ENST00000462498' => array(
		'start' => '19182623',
		'end' => '19192591',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2BNB-004'
	),
	'ENST00000462790' => array(
		'start' => '19176906',
		'end' => '19192589',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-001'
	),
	'ENST00000477565' => array(
		'start' => '19181882',
		'end' => '19192589',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-007'
	),
	'ENST00000488252' => array(
		'start' => '19176903',
		'end' => '19192412',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-005'
	),
	'ENST00000494489' => array(
		'start' => '19177008',
		'end' => '19192588',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2BNB-006'
	),
	'ENST00000585679' => array(
		'start' => '19176906',
		'end' => '19192139',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-013'
	),
	'ENST00000588208' => array(
		'start' => '19176932',
		'end' => '19186098',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-010'
	),
	'ENST00000591398' => array(
		'start' => '19182460',
		'end' => '19187027',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2BNB-009'
	),
	'ENST00000591566' => array(
		'start' => '19176904',
		'end' => '19180601',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2BNB-012'
	),
	'ENSMUST00000002418' => array(
		'start' => '70139499',
		'end' => '70147256',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => '2310045N01Rik-001'
	),
	'ENSMUST00000110139' => array(
		'start' => '70140277',
		'end' => '70147319',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => '2310045N01Rik-004'
	),
	'ENSMUST00000123760' => array(
		'start' => '70139713',
		'end' => '70145549',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => '2310045N01Rik-003'
	),
	'ENSMUST00000123976' => array(
		'start' => '70139707',
		'end' => '70145535',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => '2310045N01Rik-005'
	),
	'ENSMUST00000129668' => array(
		'start' => '70139723',
		'end' => '70147261',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => '2310045N01Rik-002'
	),
	'ENSMUST00000163756' => array(
		'start' => '70139711',
		'end' => '70167488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => '2310045N01Rik-006'
	),
	'ENSMUST00000110140' => array(
		'start' => '70152781',
		'end' => '70167487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-005'
	),
	'ENSMUST00000110141' => array(
		'start' => '70152781',
		'end' => '70167487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-004'
	),
	'ENSMUST00000110143' => array(
		'start' => '70152778',
		'end' => '70167488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-003'
	),
	'ENSMUST00000110146' => array(
		'start' => '70152778',
		'end' => '70167488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-002'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00076C_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002345' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Heart',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Testis',
			(int) 9 => 'Adipose',
			(int) 10 => 'Adrenal',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Lung',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Testis',
			(int) 20 => 'Adipose',
			(int) 21 => 'Brain',
			(int) 22 => 'Colon',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Muscle',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Ovary',
			(int) 30 => 'Placenta'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00076C_0001',
		'tax_id' => '9606',
		'chromosome' => '19',
		'seq_start' => '19145567',
		'seq_end' => '19192158',
		'region_length' => '46591',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000064489-ENSG00000064489'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00076C_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000064489' => 'MEF2BNB-MEF2B readthrough',
		'ENSG00000213999' => 'myocyte enhancer factor 2B',
		'ENSG00000254901' => 'MEF2B neighbor',
		'ENSMUSG00000002345' => 'RIKEN cDNA 2310045N01 gene',
		'ENSMUSG00000079033' => 'myocyte enhancer factor 2B'
	),
	'gene_name_arr' => array(
		'ENSG00000064489' => 'MEF2BNB-MEF2B',
		'ENSG00000213999' => 'MEF2B',
		'ENSG00000254901' => 'MEF2BNB',
		'ENSMUSG00000002345' => '2310045N01Rik',
		'ENSMUSG00000079033' => 'Mef2b'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 3 => 'Adrenal',
		(int) 6 => 'Bladder',
		(int) 9 => 'Brain',
		(int) 11 => 'Breast',
		(int) 14 => 'Colon',
		(int) 18 => 'Heart',
		(int) 24 => 'Kidney',
		(int) 28 => 'Liver',
		(int) 35 => 'Lung',
		(int) 38 => 'Muscle',
		(int) 42 => 'Ovary',
		(int) 46 => 'Placenta',
		(int) 51 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 31,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000354191' => array(
			'start' => '19145569',
			'end' => '19192158',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-MEF2B-002'
		),
		'ENST00000444486' => array(
			'start' => '19145567',
			'end' => '19192131',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-MEF2B-004'
		),
		'ENST00000514819' => array(
			'start' => '19145584',
			'end' => '19192138',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-MEF2B-001'
		),
		'ENST00000602276' => array(
			'start' => '19146868',
			'end' => '19182347',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2BNB-MEF2B-008'
		),
		'ENST00000602424' => array(
			'start' => '19145585',
			'end' => '19182617',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-MEF2B-201'
		),
		'ENST00000602438' => array(
			'start' => '19149293',
			'end' => '19192147',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2BNB-MEF2B-006'
		),
		'ENST00000602689' => array(
			'start' => '19150686',
			'end' => '19192122',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-MEF2B-007'
		),
		'ENST00000602804' => array(
			'start' => '19145572',
			'end' => '19192158',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-MEF2B-003'
		),
		'ENST00000409224' => array(
			'start' => '19145568',
			'end' => '19170263',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-004'
		),
		'ENST00000409447' => array(
			'start' => '19145593',
			'end' => '19170289',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-006'
		),
		'ENST00000410050' => array(
			'start' => '19145569',
			'end' => '19170248',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-005'
		),
		'ENST00000424583' => array(
			'start' => '19145569',
			'end' => '19170245',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2B-001'
		),
		'ENST00000462498' => array(
			'start' => '19182623',
			'end' => '19192591',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2BNB-004'
		),
		'ENST00000462790' => array(
			'start' => '19176906',
			'end' => '19192589',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-001'
		),
		'ENST00000477565' => array(
			'start' => '19181882',
			'end' => '19192589',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-007'
		),
		'ENST00000488252' => array(
			'start' => '19176903',
			'end' => '19192412',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'MEF2BNB-005'
		),
		'ENST00000494489' => array(
			'start' => '19177008',
			'end' => '19192588',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2BNB-006'
		),
		'ENST00000585679' => array(
			'start' => '19176906',
			'end' => '19192139',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-013'
		),
		'ENST00000588208' => array(
			'start' => '19176932',
			'end' => '19186098',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2BNB-010'
		),
		'ENST00000591398' => array(
			'start' => '19182460',
			'end' => '19187027',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2BNB-009'
		),
		'ENST00000591566' => array(
			'start' => '19176904',
			'end' => '19180601',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2BNB-012'
		),
		'ENSMUST00000002418' => array(
			'start' => '70139499',
			'end' => '70147256',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => '2310045N01Rik-001'
		),
		'ENSMUST00000110139' => array(
			'start' => '70140277',
			'end' => '70147319',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => '2310045N01Rik-004'
		),
		'ENSMUST00000123760' => array(
			'start' => '70139713',
			'end' => '70145549',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => '2310045N01Rik-003'
		),
		'ENSMUST00000123976' => array(
			'start' => '70139707',
			'end' => '70145535',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => '2310045N01Rik-005'
		),
		'ENSMUST00000129668' => array(
			'start' => '70139723',
			'end' => '70147261',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => '2310045N01Rik-002'
		),
		'ENSMUST00000163756' => array(
			'start' => '70139711',
			'end' => '70167488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => '2310045N01Rik-006'
		),
		'ENSMUST00000110140' => array(
			'start' => '70152781',
			'end' => '70167487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-005'
		),
		'ENSMUST00000110141' => array(
			'start' => '70152781',
			'end' => '70167487',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-004'
		),
		'ENSMUST00000110143' => array(
			'start' => '70152778',
			'end' => '70167488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-003'
		),
		'ENSMUST00000110146' => array(
			'start' => '70152778',
			'end' => '70167488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2b-002'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00076C_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00076C_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002345' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Heart',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Testis',
			(int) 9 => 'Adipose',
			(int) 10 => 'Adrenal',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Lung',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Testis',
			(int) 20 => 'Adipose',
			(int) 21 => 'Brain',
			(int) 22 => 'Colon',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Muscle',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Ovary',
			(int) 30 => 'Placenta'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000064489' => 'MEF2BNB-MEF2B readthrough',
	'ENSG00000213999' => 'myocyte enhancer factor 2B',
	'ENSG00000254901' => 'MEF2B neighbor',
	'ENSMUSG00000002345' => 'RIKEN cDNA 2310045N01 gene',
	'ENSMUSG00000079033' => 'myocyte enhancer factor 2B'
)
$gene_name_arr = array(
	'ENSG00000064489' => 'MEF2BNB-MEF2B',
	'ENSG00000213999' => 'MEF2B',
	'ENSG00000254901' => 'MEF2BNB',
	'ENSMUSG00000002345' => '2310045N01Rik',
	'ENSMUSG00000079033' => 'Mef2b'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00076C_0001',
			'tax_id' => '9606',
			'chromosome' => '19',
			'seq_start' => '19145567',
			'seq_end' => '19192158',
			'region_length' => '46591',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000064489-ENSG00000064489'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00076C_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '70139499',
			'seq_end' => '70167488',
			'region_length' => '27989',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000002345-ENSMUSG00000002345'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 3 => 'Adrenal',
	(int) 6 => 'Bladder',
	(int) 9 => 'Brain',
	(int) 11 => 'Breast',
	(int) 14 => 'Colon',
	(int) 18 => 'Heart',
	(int) 24 => 'Kidney',
	(int) 28 => 'Liver',
	(int) 35 => 'Lung',
	(int) 38 => 'Muscle',
	(int) 42 => 'Ovary',
	(int) 46 => 'Placenta',
	(int) 51 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 31
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000354191' => array(
		'start' => '19145569',
		'end' => '19192158',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-MEF2B-002'
	),
	'ENST00000444486' => array(
		'start' => '19145567',
		'end' => '19192131',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-MEF2B-004'
	),
	'ENST00000514819' => array(
		'start' => '19145584',
		'end' => '19192138',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-MEF2B-001'
	),
	'ENST00000602276' => array(
		'start' => '19146868',
		'end' => '19182347',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2BNB-MEF2B-008'
	),
	'ENST00000602424' => array(
		'start' => '19145585',
		'end' => '19182617',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-MEF2B-201'
	),
	'ENST00000602438' => array(
		'start' => '19149293',
		'end' => '19192147',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2BNB-MEF2B-006'
	),
	'ENST00000602689' => array(
		'start' => '19150686',
		'end' => '19192122',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-MEF2B-007'
	),
	'ENST00000602804' => array(
		'start' => '19145572',
		'end' => '19192158',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-MEF2B-003'
	),
	'ENST00000409224' => array(
		'start' => '19145568',
		'end' => '19170263',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-004'
	),
	'ENST00000409447' => array(
		'start' => '19145593',
		'end' => '19170289',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-006'
	),
	'ENST00000410050' => array(
		'start' => '19145569',
		'end' => '19170248',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-005'
	),
	'ENST00000424583' => array(
		'start' => '19145569',
		'end' => '19170245',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2B-001'
	),
	'ENST00000462498' => array(
		'start' => '19182623',
		'end' => '19192591',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2BNB-004'
	),
	'ENST00000462790' => array(
		'start' => '19176906',
		'end' => '19192589',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-001'
	),
	'ENST00000477565' => array(
		'start' => '19181882',
		'end' => '19192589',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-007'
	),
	'ENST00000488252' => array(
		'start' => '19176903',
		'end' => '19192412',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'MEF2BNB-005'
	),
	'ENST00000494489' => array(
		'start' => '19177008',
		'end' => '19192588',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2BNB-006'
	),
	'ENST00000585679' => array(
		'start' => '19176906',
		'end' => '19192139',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-013'
	),
	'ENST00000588208' => array(
		'start' => '19176932',
		'end' => '19186098',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2BNB-010'
	),
	'ENST00000591398' => array(
		'start' => '19182460',
		'end' => '19187027',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2BNB-009'
	),
	'ENST00000591566' => array(
		'start' => '19176904',
		'end' => '19180601',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2BNB-012'
	),
	'ENSMUST00000002418' => array(
		'start' => '70139499',
		'end' => '70147256',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => '2310045N01Rik-001'
	),
	'ENSMUST00000110139' => array(
		'start' => '70140277',
		'end' => '70147319',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => '2310045N01Rik-004'
	),
	'ENSMUST00000123760' => array(
		'start' => '70139713',
		'end' => '70145549',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => '2310045N01Rik-003'
	),
	'ENSMUST00000123976' => array(
		'start' => '70139707',
		'end' => '70145535',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => '2310045N01Rik-005'
	),
	'ENSMUST00000129668' => array(
		'start' => '70139723',
		'end' => '70147261',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => '2310045N01Rik-002'
	),
	'ENSMUST00000163756' => array(
		'start' => '70139711',
		'end' => '70167488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => '2310045N01Rik-006'
	),
	'ENSMUST00000110140' => array(
		'start' => '70152781',
		'end' => '70167487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-005'
	),
	'ENSMUST00000110141' => array(
		'start' => '70152781',
		'end' => '70167487',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-004'
	),
	'ENSMUST00000110143' => array(
		'start' => '70152778',
		'end' => '70167488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-003'
	),
	'ENSMUST00000110146' => array(
		'start' => '70152778',
		'end' => '70167488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2b-002'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00076C_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002345' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Heart',
			(int) 4 => 'Liver',
			(int) 5 => 'Muscle',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Testis',
			(int) 9 => 'Adipose',
			(int) 10 => 'Adrenal',
			(int) 11 => 'Breast',
			(int) 12 => 'Colon',
			(int) 13 => 'Heart',
			(int) 14 => 'Kidney',
			(int) 15 => 'Liver',
			(int) 16 => 'Lung',
			(int) 17 => 'Ovary',
			(int) 18 => 'Placenta',
			(int) 19 => 'Testis',
			(int) 20 => 'Adipose',
			(int) 21 => 'Brain',
			(int) 22 => 'Colon',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Muscle',
			(int) 26 => 'Ovary',
			(int) 27 => 'Placenta',
			(int) 28 => 'Testis',
			(int) 29 => 'Ovary',
			(int) 30 => 'Placenta'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00076C_0001',
		'tax_id' => '9606',
		'chromosome' => '19',
		'seq_start' => '19145567',
		'seq_end' => '19192158',
		'region_length' => '46591',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000064489-ENSG00000064489'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000064489-ENSG00000064489		CGP	9606	19:19145567-19192158
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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Source ID	Type	Tax ID	Position
ENSMUSG00000002345-ENSMUSG00000002345	CGP	10090	8:70139499-70167488
Gene	Transcript	Position	Biotype
ENSMUSG00000002345 (2310045N01Rik) RIKEN cDNA 2310045N01 gene	ENSMUST00000002418 (2310045N01Rik-001)	70139499-70147256	protein_coding
	ENSMUST00000110139 (2310045N01Rik-004)	70140277-70147319	protein_coding
	ENSMUST00000123760 (2310045N01Rik-003)	70139713-70145549	nonsense_mediated_decay
	ENSMUST00000123976 (2310045N01Rik-005)	70139707-70145535	retained_intron
	ENSMUST00000129668 (2310045N01Rik-002)	70139723-70147261	nonsense_mediated_decay
	ENSMUST00000163756 (2310045N01Rik-006)	70139711-70167488	protein_coding

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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