C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00076J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119541-ENSG00000206075 CGP 9606 18:63389190-63505085
GeneTranscriptPositionBiotype
ENSG00000119541 (VPS4B)
vacuolar protein sorting 4 homolog B (S. cerevisiae) 		ENST00000238497 (VPS4B-001) 63389190-63422463 protein_coding
ENST00000588059 (VPS4B-004) 63393444-63422463 nonsense_mediated_decay
ENST00000588323 (VPS4B-008) 63390863-63397124 processed_transcript
ENST00000589604 (VPS4B-005) 63396590-63422463 retained_intron
ENST00000591383 (VPS4B-007) 63399255-63404714 processed_transcript
ENST00000591475 (VPS4B-006) 63396342-63422483 retained_intron
ENST00000591519 (VPS4B-003) 63407376-63422390 protein_coding
ENSG00000206075 (SERPINB5)
serpin peptidase inhibitor, clade B (ovalbumin), member 5 		ENST00000382771 (SERPINB5-001) 63476761-63505085 protein_coding
ENST00000424602 (SERPINB5-003) 63477127-63489427 protein_coding
ENST00000464346 (SERPINB5-005) 63490627-63503397 processed_transcript
ENST00000465652 (SERPINB5-004) 63490618-63503375 processed_transcript
ENST00000489441 (SERPINB5-002) 63476958-63493701 protein_coding
ENST00000588986 (SERPINB5-007) 63486677-63489463 retained_intron
ENSG00000214318 (ATP5G1P6)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 6 		ENST00000451206 (ATP5G1P6-001) 63496989-63497400 processed_pseudogene
ENSG00000267430 (RP11-635N19.2)
 ENST00000589763 (RP11-635N19.2-001) 63415317-63416469 processed_pseudogene
ENSG00000269989 (RP11-635N19.3)
 ENST00000602456 (RP11-635N19.3-001) 63485601-63486018 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_00076J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000009907-ENSMUSG00000067006 CGP 10090 1:106764071-106883348
GeneTranscriptPositionBiotype
ENSMUSG00000009907 (Vps4b)
vacuolar protein sorting 4b (yeast) 		ENSMUST00000094646 (Vps4b-001) 106769430-106796728 protein_coding
ENSMUST00000112736 (Vps4b-002) 106764071-106796667 protein_coding
ENSMUST00000126057 (Vps4b-003) 106791100-106796577 retained_intron
ENSMUST00000127606 (Vps4b-004) 106785804-106789949 processed_transcript
ENSMUST00000147705 (Vps4b-005) 106777298-106782794 retained_intron
ENSMUST00000190531 (Vps4b-006) 106779441-106780624 retained_intron
ENSMUSG00000067006 (Serpinb5)
serine (or cysteine) peptidase inhibitor, clade B, member 5 		ENSMUST00000086701 (Serpinb5-001) 106861173-106883348 protein_coding
ENSMUST00000112729 (Serpinb5-003) 106870234-106883347 protein_coding
ENSMUST00000112730 (Serpinb5-002) 106861203-106883348 protein_coding
ENSMUST00000188745 (Serpinb5-004) 106861174-106880343 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076J_0001ENSG00000119541ENST00000238497ENST00000588059ENST00000588323ENST00000589604ENST00000591383ENST00000591475ENST00000591519ENSG00000206075ENST00000382771ENST00000424602ENST00000464346ENST00000465652ENST00000489441ENST00000588986ENSG00000214318ENST00000451206ENSG00000267430ENST00000589763ENSG00000269989ENST00000602456CIL_00076J_0002ENSMUSG00000009907ENSMUST00000094646ENSMUST00000112736ENSMUST00000126057ENSMUST00000127606ENSMUST00000147705ENSMUST00000190531ENSMUSG00000067006ENSMUST00000086701ENSMUST00000112729ENSMUST00000112730ENSMUST00000188745
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076J_0001ENSG00000119541ENST00000238497ENST00000588059ENST00000589604ENST00000591383ENST00000591475ENST00000591519ENSG00000206075ENST00000382771ENST00000424602ENST00000464346ENST00000465652ENST00000489441ENST00000588986ENSG00000214318ENST00000451206ENSG00000267430ENST00000589763ENSG00000269989ENST00000602456CIL_00076J_0002ENSMUSG00000009907ENSMUST00000094646ENSMUST00000112736ENSMUST00000147705ENSMUSG00000067006ENSMUST00000086701ENSMUST00000112729ENSMUST00000112730ENSMUST00000188745
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119541 ENST00000238497 11.535±0.00 9.086±0.00 1.307±0.00 7.002±3.27 8.385±3.49 4.429±1.37 2.226±1.72 8.911±3.33 3.793±0.00 5.001±0.01 0.585±0.07 6.681±2.61 11.752±2.32 8.450±2.18
ENST00000588059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A N/A
ENST00000588323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.312±0.00
ENST00000591383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.471±0.00 20.865±0.00 16.929±0.00
ENST00000591475 N/A N/A 1.256±0.00 N/A N/A N/A 0.618±0.00 N/A N/A 1.460±0.00 0.189±0.00 N/A N/A N/A
ENST00000591519 N/A N/A 3.105±0.00 N/A 7.992±0.00 N/A N/A N/A N/A 5.814±0.00 1.460±0.00 7.491±0.00 N/A N/A
ENSG00000206075 ENST00000382771 N/A N/A 0.053±0.00 N/A 2.127±0.00 0.197±0.17 0.011±0.00 0.103±0.00 1.267±0.00 N/A N/A 8.217±6.43 1.778±0.00 0.304±0.00
ENST00000424602 N/A N/A N/A N/A N/A 0.837±0.00 N/A N/A N/A N/A N/A N/A 0.486±0.00 N/A
ENST00000464346 N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.371±0.00
ENST00000465652 N/A N/A N/A 0.078±0.00 N/A N/A 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000489441 N/A N/A 0.020±0.00 0.010±0.00 N/A N/A 0.009±0.00 N/A 0.390±0.00 N/A N/A N/A N/A N/A
ENST00000588986 N/A 0.102±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214318 ENST00000451206 N/A N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A 0.157±0.04 N/A N/A
ENSG00000267430 ENST00000589763 0.086±0.00 0.197±0.00 0.388±0.00 0.042±0.00 0.209±0.06 0.748±0.00 0.064±0.01 0.141±0.11 0.367±0.00 0.668±0.00 N/A 0.138±0.17 0.060±0.00 0.064±0.04
ENSG00000269989 ENST00000602456 N/A N/A N/A N/A N/A N/A N/A N/A 1.418±0.00 N/A N/A 1.193±1.44 N/A 0.152±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009907 ENSMUST00000094646 9.149±2.84 28.387±17.90 17.290±2.44 5.239±1.65 12.201±5.18 22.342±7.80 3.307±0.24 9.858±1.26 8.806±2.48 14.247±2.44 2.933±0.23 20.277±5.89 9.742±3.41 3.353±0.92
ENSMUST00000112736 N/A N/A N/A N/A 1.316±0.00 2.419±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147705 N/A N/A N/A 17.872±0.00 N/A N/A N/A N/A N/A N/A 4.126±0.56 40.655±3.49 30.857±8.44 12.075±0.00
ENSMUST00000190531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067006 ENSMUST00000086701 0.167±0.04 N/A 6.536±1.07 0.107±0.00 3.503±0.34 8.996±1.20 0.062±0.00 0.017±0.00 N/A 2.589±1.78 0.243±0.00 0.164±0.00 N/A 0.131±0.00
ENSMUST00000112729 0.016±0.00 N/A N/A 0.015±0.01 N/A N/A 0.012±0.00 0.041±0.02 0.012±0.00 N/A 0.143±0.06 0.191±0.06 0.019±0.01 0.073±0.05
ENSMUST00000112730 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A
ENSMUST00000188745 N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A 0.009±0.00 N/A 0.111±0.08 N/A 0.155±0.11 N/A

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