C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00076L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000055591-ENSDARG00000079414 CGP 7955 15:23503638-23902584
GeneTranscriptPositionBiotype
ENSDARG00000055591 (pipox)
pipecolic acid oxidase 		ENSDART00000077980 (pipox-001) 23503638-23532441 protein_coding
ENSDARG00000079414 (sez6b)
seizure related 6 homolog b 		ENSDART00000111226 (sez6b-201) 23566726-23902584 protein_coding
ENSDART00000155502 (sez6b-001) 23566395-23898228 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00076L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179761-ENSG00000179761 CGP 9606 17:28950513-29057220
GeneTranscriptPositionBiotype
ENSG00000109118 (PHF12)
PHD finger protein 12 		ENST00000268756 (PHF12-002) 28912144-28951490 protein_coding
ENST00000332830 (PHF12-001) 28905250-28951771 protein_coding
ENST00000378879 (PHF12-007) 28910074-28951357 nonsense_mediated_decay
ENST00000483934 (PHF12-003) 28923909-28950904 processed_transcript
ENST00000577226 (PHF12-004) 28905253-28951307 protein_coding
ENST00000578900 (PHF12-015) 28921795-28928290 protein_coding
ENST00000579036 (PHF12-018) 28910226-28913094 protein_coding
ENST00000579563 (PHF12-017) 28911133-28912786 processed_transcript
ENST00000582436 (PHF12-005) 28909570-28950954 retained_intron
ENST00000582655 (PHF12-008) 28910055-28926200 processed_transcript
ENST00000582853 (PHF12-014) 28924078-28949857 protein_coding
ENST00000583524 (PHF12-006) 28913113-28951771 nonsense_mediated_decay
ENST00000583747 (PHF12-012) 28927014-28950662 protein_coding
ENST00000584236 (PHF12-011) 28924264-28950682 protein_coding
ENST00000584685 (PHF12-010) 28924049-28951606 protein_coding
ENST00000584822 (PHF12-016) 28913202-28923947 nonsense_mediated_decay
ENST00000589176 (PHF12-019) 28906105-28917408 nonsense_mediated_decay
ENSG00000179761 (PIPOX)
pipecolic acid oxidase 		ENST00000323372 (PIPOX-001) 29042900-29057220 protein_coding
ENST00000419875 (PIPOX-006) 29051956-29053660 processed_transcript
ENST00000466889 (PIPOX-015) 29044218-29053592 protein_coding
ENST00000469082 (PIPOX-002) 29044251-29055067 protein_coding
ENST00000484308 (PIPOX-014) 29046640-29056225 processed_transcript
ENST00000577182 (PIPOX-003) 28952439-29053133 processed_transcript
ENST00000578748 (PIPOX-010) 28951860-29045007 processed_transcript
ENST00000580241 (PIPOX-011) 28950513-29056683 processed_transcript
ENST00000580383 (PIPOX-012) 28950620-29053446 processed_transcript
ENST00000583215 (PIPOX-013) 28950643-29056683 processed_transcript
ENSG00000238007 (AC024619.2)
 ENST00000426489 (AC024619.2-002) 29015342-29016512 sense_intronic
ENST00000436028 (AC024619.2-001) 29012865-29016512 sense_intronic
ENSG00000263781 (RP11-321A17.3)
 ENST00000580924 (RP11-321A17.3-001) 29021325-29021640 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00076L_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017453-ENSMUSG00000000632 CGP 10090 11:77880615-77979048
GeneTranscriptPositionBiotype
ENSMUSG00000000632 (Sez6)
seizure related gene 6 		ENSMUST00000000646 (Sez6-009) 77931012-77979040 protein_coding
ENSMUST00000093995 (Sez6-001) 77930800-77979048 protein_coding
ENSMUST00000126866 (Sez6-006) 77973173-77974374 retained_intron
ENSMUST00000138346 (Sez6-002) 77951305-77954762 processed_transcript
ENSMUST00000138749 (Sez6-008) 77930917-77964091 retained_intron
ENSMUST00000140630 (Sez6-003) 77969011-77974488 protein_coding
ENSMUST00000142542 (Sez6-005) 77930839-77979048 retained_intron
ENSMUST00000151982 (Sez6-007) 77953853-77979048 nonsense_mediated_decay
ENSMUST00000155087 (Sez6-004) 77931039-77978061 retained_intron
ENSMUSG00000017453 (Pipox)
pipecolic acid oxidase 		ENSMUST00000017597 (Pipox-001) 77880615-77894096 protein_coding
ENSMUST00000151383 (Pipox-003) 77881060-77882686 retained_intron
ENSMUST00000155401 (Pipox-002) 77882619-77884544 processed_transcript
ENSMUSG00000055045 (Gm11190)
predicted gene 11190 		ENSMUST00000132487 (Gm11190-001) 77912127-77929288 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076L_0001ENSDARG00000055591ENSDART00000077980ENSDARG00000079414ENSDART00000111226ENSDART00000155502CIL_00076L_0002ENSG00000109118ENST00000268756ENST00000332830ENST00000378879ENST00000483934ENST00000577226ENST00000578900ENST00000579036ENST00000579563ENST00000582436ENST00000582655ENST00000582853ENST00000583524ENST00000583747ENST00000584236ENST00000584685ENST00000584822ENST00000589176ENSG00000179761ENST00000323372ENST00000419875ENST00000466889ENST00000469082ENST00000484308ENST00000577182ENST00000578748ENST00000580241ENST00000580383ENST00000583215ENSG00000238007ENST00000426489ENST00000436028ENSG00000263781ENST00000580924CIL_00076L_0003ENSMUSG00000000632ENSMUST00000000646ENSMUST00000093995ENSMUST00000126866ENSMUST00000138346ENSMUST00000138749ENSMUST00000140630ENSMUST00000142542ENSMUST00000151982ENSMUST00000155087ENSMUSG00000017453ENSMUST00000017597ENSMUST00000151383ENSMUST00000155401ENSMUSG00000055045ENSMUST00000132487
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076L_0001ENSDARG00000055591ENSDART00000077980ENSDARG00000079414ENSDART00000111226ENSDART00000155502CIL_00076L_0002ENSG00000109118ENST00000268756ENST00000332830ENST00000577226ENST00000582436ENST00000582655ENST00000589176ENSG00000179761ENST00000323372ENST00000484308ENSG00000238007ENST00000426489ENST00000436028ENSG00000263781ENST00000580924CIL_00076L_0003ENSMUSG00000000632ENSMUST00000000646ENSMUST00000093995ENSMUST00000126866ENSMUST00000138346ENSMUST00000138749ENSMUST00000140630ENSMUST00000142542ENSMUST00000151982ENSMUST00000155087ENSMUSG00000017453ENSMUST00000017597ENSMUST00000151383ENSMUST00000155401ENSMUSG00000055045ENSMUST00000132487
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055591 ENSDART00000077980 N/A N/A N/A 1.195±0.64 N/A N/A 0.578±0.26 2.961±0.27 1.132±0.00 N/A 0.364±0.00 N/A N/A N/A
ENSDARG00000079414 ENSDART00000111226 N/A N/A N/A 10.778±6.72 N/A N/A 0.096±0.06 0.116±0.03 0.020±0.00 N/A 0.251±0.00 N/A N/A N/A
ENSDART00000155502 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109118 ENST00000268756 N/A N/A N/A N/A 0.873±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000332830 3.100±0.00 8.157±0.00 N/A 0.652±0.00 2.385±1.74 5.802±0.00 N/A 4.877±0.00 0.859±0.00 2.886±2.35 2.275±1.96 7.266±4.07 3.481±1.81 8.043±3.76
ENST00000378879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577226 0.709±0.00 2.592±0.00 N/A N/A 0.567±0.13 1.532±0.00 0.505±0.00 N/A 0.363±0.00 1.152±0.91 0.777±0.00 1.510±0.47 N/A 1.053±0.00
ENST00000578900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582436 N/A N/A N/A 0.441±0.00 0.762±0.00 0.639±0.00 N/A N/A N/A 0.413±0.00 N/A N/A N/A N/A
ENST00000582655 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.278±0.00 1.017±0.00 N/A N/A N/A
ENST00000582853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589176 N/A 24.410±0.00 N/A N/A 8.193±0.00 N/A N/A N/A N/A N/A 1.627±0.00 9.564±0.00 N/A N/A
ENSG00000179761 ENST00000323372 N/A N/A 18.274±0.00 4.419±3.15 N/A N/A N/A 33.660±0.00 50.959±0.00 N/A N/A 2.499±0.99 N/A N/A
ENST00000419875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.232±0.00 N/A
ENST00000577182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238007 ENST00000426489 0.120±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.140±0.42
ENST00000436028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.112±0.00
ENSG00000263781 ENST00000580924 N/A 0.147±0.00 N/A 0.343±0.00 0.049±0.00 0.045±0.00 0.352±0.00 0.149±0.00 0.300±0.00 N/A 0.497±0.45 0.204±0.07 0.062±0.00 0.043±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000632 ENSMUST00000000646 N/A N/A 0.011±0.00 14.927±2.68 N/A 0.060±0.02 N/A 0.028±0.02 N/A 0.014±0.00 0.107±0.01 0.351±0.25 0.010±0.00 N/A
ENSMUST00000093995 N/A 0.241±0.11 N/A 39.141±2.51 N/A 0.139±0.04 N/A N/A 0.004±0.00 N/A N/A 0.616±0.18 N/A N/A
ENSMUST00000126866 N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A 0.016±0.00 N/A 0.148±0.00 N/A N/A N/A
ENSMUST00000138346 N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 0.013±0.00 N/A N/A N/A N/A N/A
ENSMUST00000138749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A
ENSMUST00000140630 N/A N/A N/A 25.009±0.00 0.135±0.00 N/A 0.153±0.00 N/A N/A N/A 0.076±0.00 0.721±0.00 N/A 0.566±0.00
ENSMUST00000142542 0.309±0.00 N/A N/A 12.433±2.93 0.066±0.00 N/A N/A N/A N/A N/A 0.044±0.00 0.198±0.06 N/A N/A
ENSMUST00000151982 0.859±0.66 0.260±0.09 0.022±0.00 12.381±2.13 0.198±0.08 0.210±0.12 0.062±0.03 0.033±0.01 0.015±0.01 0.055±0.01 0.075±0.05 0.508±0.22 0.017±0.00 N/A
ENSMUST00000155087 N/A N/A N/A N/A 0.043±0.00 0.130±0.08 N/A N/A 0.005±0.00 N/A 0.094±0.00 0.163±0.00 N/A N/A
ENSMUSG00000017453 ENSMUST00000017597 0.076±0.04 2.431±0.53 0.121±0.00 2.006±1.53 0.270±0.09 0.387±0.12 0.153±0.04 110.056±10.11 65.495±44.04 0.443±0.06 0.036±0.02 1.037±0.37 0.217±0.14 0.114±0.07
ENSMUST00000151383 0.050±0.01 0.965±0.24 0.140±0.00 1.719±1.09 0.110±0.03 0.239±0.09 0.139±0.08 N/A N/A 0.278±0.14 0.077±0.04 0.780±0.43 0.134±0.00 N/A
ENSMUST00000155401 0.041±0.00 1.769±0.00 N/A N/A N/A 0.169±0.00 N/A N/A N/A 0.164±0.00 0.111±0.04 1.334±0.91 0.097±0.02 0.355±0.00
ENSMUSG00000055045 ENSMUST00000132487 N/A N/A 0.016±0.00 0.048±0.01 N/A N/A N/A 0.015±0.00 0.002±0.00 0.033±0.03 N/A 0.009±0.00 N/A 0.312±0.02

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