C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00078R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132475-ENSG00000132478 CGP 9606 17:75776434-75825799
GeneTranscriptPositionBiotype
ENSG00000132475 (H3F3B)
H3 histone, family 3B (H3.3B) 		ENST00000254810 (H3F3B-001) 75776434-75779779 protein_coding
ENST00000586270 (H3F3B-006) 75778610-75779603 protein_coding
ENST00000586518 (H3F3B-012) 75778072-75779772 retained_intron
ENST00000586607 (H3F3B-003) 75778576-75785486 protein_coding
ENST00000587171 (H3F3B-009) 75778638-75779778 protein_coding
ENST00000587560 (H3F3B-007) 75778567-75779286 protein_coding
ENST00000589417 (H3F3B-004) 75778647-75779779 retained_intron
ENST00000589599 (H3F3B-005) 75778574-75779780 protein_coding
ENST00000589949 (H3F3B-008) 75778453-75779766 retained_intron
ENST00000591890 (H3F3B-011) 75778325-75779759 protein_coding
ENST00000591893 (H3F3B-013) 75783107-75785893 retained_intron
ENST00000592643 (H3F3B-010) 75778250-75779758 protein_coding
ENST00000593254 (H3F3B-002) 75778020-75779778 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_00078R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000016559-ENSMUSG00000020770 CGP 10090 11:116021912-116061214
GeneTranscriptPositionBiotype
ENSMUSG00000016559 (H3f3b)
H3 histone, family 3B 		ENSMUST00000016703 (H3f3b-201) 116021961-116024504 protein_coding
ENSMUST00000106454 (H3f3b-001) 116021912-116027962 protein_coding
ENSMUST00000139378 (H3f3b-003) 116023509-116024473 processed_transcript
ENSMUST00000139623 (H3f3b-002) 116023193-116024514 processed_transcript
ENSMUSG00000020770 (Unk)
unkempt homolog (Drosophila) 		ENSMUST00000021116 (Unk-001) 116030322-116061214 protein_coding
ENSMUST00000106452 (Unk-002) 116030322-116061214 protein_coding
ENSMUST00000140683 (Unk-004) 116055898-116059106 retained_intron
ENSMUST00000150759 (Unk-003) 116038657-116061214 processed_transcript
ENSMUST00000175702 (Unk-005) 116053295-116056067 retained_intron
ENSMUST00000176212 (Unk-006) 116049299-116053678 retained_intron
ENSMUST00000176788 (Unk-007) 116030323-116041050 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078R_0001ENSG00000132475ENST00000254810ENST00000586270ENST00000586518ENST00000586607ENST00000587171ENST00000587560ENST00000589417ENST00000589599ENST00000589949ENST00000591890ENST00000591893ENST00000592643ENST00000593254CIL_00078R_0002ENSMUSG00000016559ENSMUST00000016703ENSMUST00000106454ENSMUST00000139378ENSMUST00000139623ENSMUSG00000020770ENSMUST00000021116ENSMUST00000106452ENSMUST00000140683ENSMUST00000150759ENSMUST00000175702ENSMUST00000176212ENSMUST00000176788
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078R_0001ENSG00000132475ENST00000254810ENST00000586270ENST00000586607ENST00000587171ENST00000589599ENST00000591890ENST00000592643ENST00000593254CIL_00078R_0002ENSMUSG00000016559ENSMUST00000016703ENSMUST00000139378ENSMUST00000139623ENSMUSG00000020770ENSMUST00000021116ENSMUST00000106452ENSMUST00000150759ENSMUST00000176788
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132475 ENST00000254810 33.682±0.00 129.909±0.00 8.435±0.00 71.541±51.55 45.715±22.21 37.396±16.58 11.268±5.49 29.212±23.74 11.682±6.70 72.258±42.13 12.857±1.99 118.346±76.38 30.116±12.96 55.127±27.35
ENST00000586270 N/A N/A 97.947±0.00 134.111±0.00 199.734±0.00 202.769±0.00 50.696±0.00 121.948±0.00 179.935±0.00 112.090±0.00 156.804±0.00 381.073±0.00 211.435±2.94 N/A
ENST00000586518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586607 N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.551±0.00 N/A N/A N/A N/A
ENST00000587171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 315.495±0.00
ENST00000587560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1162.310±0.00 N/A N/A
ENST00000589949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591890 N/A N/A N/A N/A N/A N/A 31.393±0.00 N/A 23.601±0.00 N/A 27.185±0.00 111.835±0.00 N/A N/A
ENST00000591893 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592643 N/A N/A N/A N/A N/A 92.726±0.00 N/A N/A N/A N/A N/A N/A 76.321±8.58 210.679±0.00
ENST00000593254 N/A N/A 14.484±0.00 23.588±0.00 42.827±0.00 N/A N/A 66.560±0.00 32.242±0.00 31.129±0.00 14.802±0.00 251.486±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016559 ENSMUST00000016703 69.294±37.47 40.182±6.27 120.504±8.09 260.945±186.75 77.815±38.30 168.726±35.20 27.330±5.15 60.922±17.60 115.775±80.43 165.665±5.57 16.905±1.81 98.914±28.63 111.435±73.49 88.380±39.64
ENSMUST00000106454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139378 N/A 5.354±0.00 N/A 43.605±0.00 13.753±0.00 N/A N/A N/A N/A N/A N/A 40.942±36.51 63.620±0.00 N/A
ENSMUST00000139623 23.245±5.77 N/A 80.409±18.54 51.761±0.00 21.108±1.97 30.646±0.00 12.049±3.20 30.323±10.29 92.939±21.37 N/A 12.049±1.55 123.985±0.00 183.548±77.60 84.199±3.34
ENSMUSG00000020770 ENSMUST00000021116 4.148±1.10 8.885±1.70 5.886±0.34 20.939±6.01 6.374±1.85 5.803±0.96 2.204±0.75 4.491±1.60 4.192±3.03 8.688±1.17 0.887±0.23 9.270±3.30 6.635±3.40 2.865±0.40
ENSMUST00000106452 2.273±0.49 3.276±0.70 1.685±0.46 8.970±0.97 2.058±0.26 2.086±0.33 1.302±0.50 2.009±0.62 1.273±0.42 3.051±0.62 0.587±0.13 3.024±0.79 2.088±0.78 2.268±1.13
ENSMUST00000140683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150759 N/A N/A N/A 1.376±0.00 N/A N/A N/A N/A N/A N/A 0.370±0.00 3.784±0.87 3.762±0.00 0.343±0.00
ENSMUST00000175702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.908±0.00

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