C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007B3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000050426-ENSG00000110925 CGP 9606 12:51047962-51083664
GeneTranscriptPositionBiotype
ENSG00000050426 (LETMD1)
LETM1 domain containing 1 		ENST00000262055 (LETMD1-001) 51048318-51060421 protein_coding
ENST00000380135 (LETMD1-010) 51048344-51060363 nonsense_mediated_decay
ENST00000418425 (LETMD1-006) 51048338-51060413 protein_coding
ENST00000546814 (LETMD1-030) 51055880-51059534 retained_intron
ENST00000546992 (LETMD1-020) 51048327-51052361 retained_intron
ENST00000547008 (LETMD1-008) 51048341-51060369 protein_coding
ENST00000547029 (LETMD1-023) 51048319-51058128 processed_transcript
ENST00000547256 (LETMD1-036) 51049078-51059717 protein_coding
ENST00000547318 (LETMD1-002) 51048301-51060409 nonsense_mediated_decay
ENST00000547555 (LETMD1-004) 51048327-51060424 nonsense_mediated_decay
ENST00000547660 (LETMD1-027) 51048327-51059412 protein_coding
ENST00000547877 (LETMD1-011) 51048343-51060421 retained_intron
ENST00000548209 (LETMD1-024) 51048327-51056428 protein_coding
ENST00000548251 (LETMD1-025) 51048327-51056490 protein_coding
ENST00000548390 (LETMD1-018) 51048327-51049430 retained_intron
ENST00000548401 (LETMD1-028) 51048329-51052201 protein_coding
ENST00000548516 (LETMD1-032) 51048358-51059659 processed_transcript
ENST00000549340 (LETMD1-019) 51048321-51058048 protein_coding
ENST00000549395 (LETMD1-039) 51056371-51059649 processed_transcript
ENST00000549686 (LETMD1-029) 51048338-51059532 nonsense_mediated_decay
ENST00000550100 (LETMD1-009) 51048344-51060303 nonsense_mediated_decay
ENST00000550274 (LETMD1-035) 51056057-51059827 retained_intron
ENST00000550442 (LETMD1-034) 51048320-51056391 protein_coding
ENST00000550446 (LETMD1-033) 51048318-51056775 processed_transcript
ENST00000550715 (LETMD1-005) 51048327-51056952 retained_intron
ENST00000550755 (LETMD1-021) 51048318-51055977 nonsense_mediated_decay
ENST00000550814 (LETMD1-026) 51048327-51058067 protein_coding
ENST00000550929 (LETMD1-003) 51048318-51059805 protein_coding
ENST00000551261 (LETMD1-022) 51048327-51055848 nonsense_mediated_decay
ENST00000551477 (LETMD1-015) 51047962-51058087 protein_coding
ENST00000551931 (LETMD1-037) 51055909-51059702 protein_coding
ENST00000552430 (LETMD1-016) 51048313-51056237 processed_transcript
ENST00000552433 (LETMD1-031) 51055699-51056529 retained_intron
ENST00000552645 (LETMD1-013) 51048874-51060421 retained_intron
ENST00000552739 (LETMD1-012) 51048346-51060401 protein_coding
ENST00000553043 (LETMD1-038) 51056179-51059867 protein_coding
ENST00000553175 (LETMD1-017) 51048317-51056221 processed_transcript
ENST00000623495 (LETMD1-014) 51057471-51060418 TEC
ENSG00000110925 (CSRNP2)
cysteine-serine-rich nuclear protein 2 		ENST00000228515 (CSRNP2-001) 51061205-51083550 protein_coding
ENST00000546935 (CSRNP2-004) 51074058-51083583 protein_coding
ENST00000548206 (CSRNP2-006) 51067899-51083582 protein_coding
ENST00000548981 (CSRNP2-003) 51073890-51083643 protein_coding
ENST00000550461 (CSRNP2-005) 51076569-51083596 processed_transcript
ENST00000550533 (CSRNP2-008) 51073928-51076835 retained_intron
ENST00000552680 (CSRNP2-002) 51076416-51083664 processed_transcript
ENST00000552899 (CSRNP2-007) 51073975-51083110 protein_coding
ENSG00000277201 (AC087884.1)
 ENST00000613475 (AC087884.1-201) 51049921-51050025 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007B3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037353-ENSMUSG00000044636 CGP 10090 15:100469034-100495239
GeneTranscriptPositionBiotype
ENSMUSG00000037353 (Letmd1)
LETM1 domain containing 1 		ENSMUST00000037001 (Letmd1-201) 100469034-100479252 protein_coding
ENSMUSG00000044636 (Csrnp2)
cysteine-serine-rich nuclear protein 2 		ENSMUST00000061457 (Csrnp2-201) 100479570-100495239 protein_coding

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007B3_0001ENSG00000050426ENST00000262055ENST00000546992ENST00000547008ENST00000547318ENST00000547555ENST00000547877ENST00000549395ENST00000549686ENST00000550100ENST00000552739ENST00000623495ENSG00000110925ENST00000228515ENST00000548206ENSG00000277201ENST00000613475CIL_0007B3_0002ENSMUSG00000037353ENSMUST00000037001ENSMUSG00000044636ENSMUST00000061457
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000050426 ENST00000262055 21.833±0.00 N/A N/A 8.195±0.00 9.577±0.00 9.610±0.00 1.498±0.00 3.628±0.00 1.996±0.00 2.901±0.00 6.644±0.00 6.883±0.40 4.145±0.41 7.081±0.00
ENST00000380135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.320±0.00 N/A N/A N/A
ENST00000547008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.113±0.00 3.068±0.00 N/A
ENST00000547029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547318 N/A N/A N/A 5.077±0.00 N/A N/A 1.954±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000547555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.161±0.00 N/A N/A
ENST00000547660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547877 N/A N/A 4.419±0.00 5.881±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.614±0.00 N/A N/A N/A
ENST00000549686 N/A N/A N/A 32.022±0.00 12.813±0.00 15.646±0.00 3.802±0.00 N/A 10.667±0.00 7.915±0.00 N/A 10.330±0.00 13.225±0.00 17.889±0.00
ENST00000550100 N/A N/A N/A 9.263±0.00 10.058±0.00 18.077±0.00 3.035±0.00 7.876±0.00 N/A 8.872±0.00 0.945±0.00 12.843±0.00 5.559±1.23 8.771±0.00
ENST00000550274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552739 N/A N/A N/A 6.831±0.00 6.103±0.00 N/A N/A N/A 2.270±0.00 4.490±0.00 5.397±0.00 9.851±1.67 3.186±0.00 4.759±0.74
ENST00000553043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623495 N/A 6.796±0.00 3.199±0.00 N/A 2.499±0.00 3.157±0.00 N/A 2.664±0.65 N/A 2.678±0.00 0.843±0.00 3.304±1.62 N/A 3.305±0.00
ENSG00000110925 ENST00000228515 2.751±0.00 N/A N/A 9.089±0.00 2.456±0.00 1.589±0.67 2.573±2.19 4.335±0.00 1.930±0.82 6.670±0.00 1.217±0.63 4.770±3.01 4.907±0.91 24.167±7.33
ENST00000546935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548206 N/A N/A N/A N/A N/A N/A N/A 3.427±0.00 N/A N/A N/A N/A N/A N/A
ENST00000548981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277201 ENST00000613475 0.460±0.00 N/A N/A 0.234±0.00 0.216±0.00 N/A 0.829±0.00 0.221±0.00 N/A N/A N/A N/A N/A 0.906±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037353 ENSMUST00000037001 30.342±10.52 46.435±3.53 18.557±0.38 13.498±6.52 23.664±12.11 13.952±1.55 8.042±2.75 21.408±5.69 14.293±3.39 12.507±3.56 2.483±0.75 18.075±4.50 7.049±3.04 4.401±2.56
ENSMUSG00000044636 ENSMUST00000061457 1.894±0.75 2.849±0.22 1.643±0.59 10.552±5.69 1.965±0.50 1.400±0.39 0.798±0.33 1.003±0.24 0.624±0.16 1.674±0.38 0.815±0.16 5.090±1.97 4.274±2.19 1.296±0.66

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