C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007BY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107159-ENSG00000198467 CGP 9606 9:35673856-35691020
GeneTranscriptPositionBiotype
ENSG00000137135 (ARHGEF39)
Rho guanine nucleotide exchange factor (GEF) 39 		ENST00000378387 (ARHGEF39-001) 35659344-35665287 protein_coding
ENST00000468876 (ARHGEF39-006) 35662967-35664828 processed_transcript
ENST00000475323 (ARHGEF39-003) 35658877-35665192 nonsense_mediated_decay
ENST00000488918 (ARHGEF39-005) 35661838-35662644 processed_transcript
ENST00000490638 (ARHGEF39-004) 35658875-35675866 nonsense_mediated_decay
ENST00000490970 (ARHGEF39-002) 35661519-35665187 processed_transcript
ENSG00000198467 (TPM2)
tropomyosin 2 (beta) 		ENST00000329305 (TPM2-006) 35682014-35689913 protein_coding
ENST00000360958 (TPM2-002) 35682930-35689922 protein_coding
ENST00000378292 (TPM2-001) 35681992-35691020 protein_coding
ENST00000378300 (TPM2-005) 35681992-35689903 protein_coding
ENST00000471212 (TPM2-003) 35684251-35689900 retained_intron
ENST00000486018 (TPM2-004) 35684751-35685543 retained_intron
ENST00000604975 (TPM2-007) 35685145-35689925 retained_intron
ENST00000607559 (TPM2-008) 35684041-35685466 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0007BY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028463-ENSMUSG00000028464 CGP 10090 4:43506966-43523765
GeneTranscriptPositionBiotype
ENSMUSG00000028463 (Car9)
carbonic anhydrase 9 		ENSMUST00000030183 (Car9-001) 43506966-43513729 protein_coding
ENSMUST00000124114 (Car9-002) 43507024-43513729 processed_transcript
ENSMUST00000126750 (Car9-005) 43508543-43509035 processed_transcript
ENSMUST00000128232 (Car9-004) 43507877-43508974 processed_transcript
ENSMUST00000129996 (Car9-006) 43508937-43512455 processed_transcript
ENSMUST00000138073 (Car9-003) 43507312-43513058 protein_coding
ENSMUST00000154251 (Car9-007) 43512132-43512942 processed_transcript
ENSMUSG00000028464 (Tpm2)
tropomyosin 2, beta 		ENSMUST00000030184 (Tpm2-002) 43514711-43523464 protein_coding
ENSMUST00000107913 (Tpm2-201) 43514712-43523388 protein_coding
ENSMUST00000107914 (Tpm2-001) 43514711-43523595 protein_coding
ENSMUST00000133355 (Tpm2-005) 43515682-43519669 processed_transcript
ENSMUST00000150262 (Tpm2-003) 43514711-43523438 processed_transcript
ENSMUST00000150592 (Tpm2-004) 43519668-43523765 protein_coding
ENSMUSG00000087142 (Gm12454)
predicted gene 12454 		ENSMUST00000139119 (Gm12454-001) 43505657-43508747 antisense
ENSMUST00000149817 (Gm12454-002) 43504428-43508724 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BY_0001ENSG00000137135ENST00000378387ENST00000468876ENST00000475323ENST00000488918ENST00000490638ENST00000490970ENSG00000198467ENST00000329305ENST00000360958ENST00000378292ENST00000378300ENST00000471212ENST00000486018ENST00000604975ENST00000607559CIL_0007BY_0002ENSMUSG00000028463ENSMUST00000030183ENSMUST00000124114ENSMUST00000126750ENSMUST00000128232ENSMUST00000129996ENSMUST00000138073ENSMUST00000154251ENSMUSG00000028464ENSMUST00000030184ENSMUST00000107913ENSMUST00000107914ENSMUST00000133355ENSMUST00000150262ENSMUST00000150592ENSMUSG00000087142ENSMUST00000139119ENSMUST00000149817
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007BY_0001ENSG00000137135ENST00000378387ENST00000475323ENSG00000198467ENST00000329305ENST00000360958ENST00000378292ENST00000378300ENST00000471212CIL_0007BY_0002ENSMUSG00000028463ENSMUST00000030183ENSMUST00000124114ENSMUST00000129996ENSMUST00000138073ENSMUST00000154251ENSMUSG00000028464ENSMUST00000030184ENSMUST00000107913ENSMUST00000107914ENSMUST00000150262ENSMUST00000150592ENSMUSG00000087142ENSMUST00000139119ENSMUST00000149817
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137135 ENST00000378387 0.948±0.00 0.735±0.00 N/A N/A N/A 0.257±0.00 N/A N/A N/A 0.049±0.00 N/A 2.794±2.18 0.947±0.00 1.361±0.05
ENST00000468876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475323 3.997±0.00 3.491±0.00 0.020±0.00 1.348±0.65 11.515±0.00 10.231±0.00 3.188±0.00 1.642±1.58 2.247±0.00 4.548±0.00 3.132±2.57 3.740±0.51 3.095±1.05 3.489±0.81
ENST00000488918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198467 ENST00000329305 67.413±0.00 172.965±0.00 N/A 7.251±6.28 N/A 1012.620±0.00 N/A 67.120±0.00 4.334±0.00 213.087±0.00 N/A 64.176±62.80 113.315±32.52 338.993±0.00
ENST00000360958 N/A N/A 1.097±0.00 5.393±3.49 639.662±0.00 N/A 174.846±129.47 N/A N/A N/A 2174.025±147.66 2.791±0.00 N/A 87.146±72.46
ENST00000378292 73.870±0.00 177.410±0.00 2.187±0.00 9.261±7.84 34.404±0.00 592.354±542.54 7.096±0.00 37.146±35.83 73.278±70.50 62.066±56.67 N/A 162.611±142.16 98.451±25.28 171.067±132.46
ENST00000378300 N/A N/A N/A N/A N/A N/A 61.472±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000471212 N/A N/A 2.641±0.00 N/A 21.073±0.00 13.547±0.00 N/A 0.751±0.00 N/A 2.833±0.00 N/A 36.119±36.32 N/A N/A
ENST00000486018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028463 ENSMUST00000030183 0.476±0.00 0.119±0.00 1.993±0.33 0.088±0.01 0.355±0.19 28.670±1.28 N/A 1.537±0.84 0.505±0.29 0.616±0.34 0.693±0.13 2.483±0.70 0.776±0.31 0.082±0.01
ENSMUST00000124114 0.778±0.00 0.399±0.21 N/A N/A 0.346±0.12 N/A 0.096±0.00 N/A 0.112±0.05 N/A 0.292±0.00 1.342±0.43 N/A 0.022±0.00
ENSMUST00000126750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129996 N/A N/A N/A N/A 0.501±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138073 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.060±0.00 N/A 0.441±0.00 2.476±0.00 N/A 0.019±0.00
ENSMUST00000154251 N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028464 ENSMUST00000030184 12.178±11.17 1.983±0.78 N/A 0.639±0.37 92.289±102.89 24.945±4.46 10.132±3.73 5.946±5.16 0.342±0.23 20.248±14.61 N/A 9.119±1.97 N/A 1.325±0.67
ENSMUST00000107913 N/A N/A N/A 1.770±0.83 81.672±40.28 N/A 1.654±0.00 5.728±0.88 2.125±1.94 9.897±0.05 394.057±283.36 N/A 24.963±8.38 N/A
ENSMUST00000107914 43.959±34.45 12.107±4.09 1211.785±146.36 1.951±0.57 8.941±0.77 145.541±25.22 N/A 5.980±0.92 5.145±3.40 18.343±2.12 N/A 93.709±78.79 225.109±140.42 7.705±4.10
ENSMUST00000133355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150262 N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A 10.363±1.79 N/A 1.969±0.00
ENSMUST00000150592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 202.248±0.00 241.402±89.67 16.742±0.00
ENSMUSG00000087142 ENSMUST00000139119 0.448±0.14 N/A 4.968±0.83 0.087±0.05 0.284±0.00 N/A 0.194±0.05 N/A 0.328±0.20 0.655±0.11 0.230±0.01 3.750±0.61 1.228±0.55 0.275±0.31
ENSMUST00000149817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.715±0.00 N/A

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