C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007FU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000038358-ENSG00000188038 CGP 9606 16:67873023-67888855
GeneTranscriptPositionBiotype
ENSG00000038358 (EDC4)
enhancer of mRNA decapping 4
ENST00000358933 (EDC4-001) 67873023-67884503 protein_coding
ENST00000536072 (EDC4-003) 67873372-67880489 retained_intron
ENST00000572031 (EDC4-007) 67878872-67879739 retained_intron
ENST00000572221 (EDC4-002) 67873052-67884495 retained_intron
ENST00000572724 (EDC4-008) 67880749-67881349 retained_intron
ENST00000573985 (EDC4-015) 67882487-67884165 protein_coding
ENST00000573992 (EDC4-004) 67877489-67884497 retained_intron
ENST00000574770 (EDC4-005) 67876485-67879779 processed_transcript
ENST00000575033 (EDC4-013) 67882780-67884123 protein_coding
ENST00000575507 (EDC4-012) 67882067-67882923 retained_intron
ENST00000575514 (EDC4-011) 67880916-67882516 retained_intron
ENST00000576972 (EDC4-010) 67880747-67881796 retained_intron
ENST00000577028 (EDC4-009) 67880349-67881180 retained_intron
ENST00000577105 (EDC4-014) 67882449-67884322 protein_coding
CIL_0007FU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036270-ENSMUSG00000044287 CGP 10090 8:105880881-105895023
GeneTranscriptPositionBiotype
ENSMUSG00000036270 (Edc4)
enhancer of mRNA decapping 4
ENSMUST00000040254 (Edc4-001) 105880881-105893225 protein_coding
ENSMUST00000119261 (Edc4-002) 105880951-105893208 protein_coding
ENSMUST00000132680 (Edc4-006) 105887378-105889532 protein_coding
ENSMUST00000136048 (Edc4-003) 105881077-105894908 nonsense_mediated_decay
ENSMUST00000139154 (Edc4-004) 105886969-105888145 retained_intron
ENSMUST00000145618 (Edc4-005) 105887392-105888713 protein_coding
ENSMUST00000156357 (Edc4-007) 105890268-105891328 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007FU_0001ENSG00000038358ENST00000358933ENST00000536072ENST00000572031ENST00000572221ENST00000572724ENST00000573985ENST00000573992ENST00000574770ENST00000575033ENST00000575507ENST00000575514ENST00000576972ENST00000577028ENST00000577105CIL_0007FU_0002ENSMUSG00000036270ENSMUST00000040254ENSMUST00000119261ENSMUST00000132680ENSMUST00000136048ENSMUST00000139154ENSMUST00000145618ENSMUST00000156357
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007FU_0001ENSG00000038358ENST00000358933ENST00000572221ENST00000573992ENST00000574770ENST00000575514CIL_0007FU_0002ENSMUSG00000036270ENSMUST00000040254ENSMUST00000119261ENSMUST00000132680
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000038358 ENST00000358933 4.158±0.00 4.161±0.00 1.124±0.00 6.307±3.17 3.175±1.67 3.849±0.00 2.293±0.00 5.681±3.82 2.259±0.00 3.538±2.57 5.146±3.37 5.124±3.55 5.189±1.24 8.168±1.23
ENST00000536072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572221 N/A 3.459±0.00 N/A N/A N/A 1.062±0.00 0.828±0.00 N/A 0.779±0.00 1.524±1.14 N/A 2.280±0.32 N/A N/A
ENST00000572724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573992 2.441±0.00 5.305±0.00 N/A 1.344±0.00 2.771±0.00 2.216±0.27 0.968±0.53 N/A 1.418±0.06 N/A 6.218±0.00 6.051±1.52 3.188±0.72 6.923±0.62
ENST00000574770 N/A N/A 1.164±0.00 2.450±0.00 3.919±0.00 4.155±0.00 1.569±0.46 N/A 4.603±0.00 4.808±0.00 4.595±0.00 4.374±0.00 N/A N/A
ENST00000575033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.043±0.00 13.228±0.00 7.476±0.00 23.628±0.00
ENST00000576972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036270 ENSMUST00000040254 11.776±4.26 12.908±1.93 9.456±0.72 13.635±3.54 14.883±2.31 13.473±2.94 8.642±4.17 8.369±2.40 5.940±2.55 16.861±2.68 4.093±1.03 17.471±5.26 8.928±1.44 20.244±7.08
ENSMUST00000119261 3.885±0.71 6.140±1.77 1.587±0.00 4.041±0.07 5.413±1.13 3.943±0.37 1.868±0.19 2.808±1.37 2.433±1.09 4.213±0.57 1.339±0.62 8.361±2.70 2.922±1.47 4.071±1.69
ENSMUST00000132680 N/A 10.861±1.54 N/A N/A 10.844±0.00 10.860±0.99 N/A N/A 3.569±0.12 N/A N/A 19.946±2.51 N/A N/A
ENSMUST00000136048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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