C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007GU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154767-ENSG00000170860 CGP 9606 3:14145147-14201119
GeneTranscriptPositionBiotype
ENSG00000154767 (XPC)
xeroderma pigmentosum, complementation group C 		ENST00000285021 (XPC-001) 14145147-14178783 protein_coding
ENST00000427795 (XPC-006) 14147467-14148928 retained_intron
ENST00000452172 (XPC-004) 14164907-14170614 retained_intron
ENST00000455144 (XPC-005) 14164366-14170460 retained_intron
ENST00000476581 (XPC-002) 14145729-14178601 nonsense_mediated_decay
ENST00000477324 (XPC-008) 14158807-14167267 retained_intron
ENST00000511155 (XPC-007) 14168271-14178621 protein_coding
ENSG00000170860 (LSM3)
LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENST00000306024 (LSM3-001) 14178358-14201119 protein_coding
CIL_0007GU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030094-ENSMUSG00000034192 CGP 10090 6:91489305-91522625
GeneTranscriptPositionBiotype
ENSMUSG00000030094 (Xpc)
xeroderma pigmentosum, complementation group C 		ENSMUST00000032182 (Xpc-001) 91489305-91515884 protein_coding
ENSMUST00000150279 (Xpc-002) 91492273-91515884 retained_intron
ENSMUSG00000034192 (Lsm3)
LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENSMUST00000040607 (Lsm3-001) 91515928-91522625 protein_coding
ENSMUST00000123569 (Lsm3-002) 91516047-91517481 retained_intron
ENSMUST00000126253 (Lsm3-003) 91515957-91519835 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GU_0001ENSG00000154767ENST00000285021ENST00000427795ENST00000452172ENST00000455144ENST00000476581ENST00000477324ENST00000511155ENSG00000170860ENST00000306024CIL_0007GU_0002ENSMUSG00000030094ENSMUST00000032182ENSMUST00000150279ENSMUSG00000034192ENSMUST00000040607ENSMUST00000123569ENSMUST00000126253
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GU_0001ENSG00000154767ENST00000285021ENSG00000170860ENST00000306024CIL_0007GU_0002ENSMUSG00000030094ENSMUST00000032182ENSMUST00000150279ENSMUSG00000034192ENSMUST00000040607ENSMUST00000126253
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000154767 ENST00000285021 N/A N/A N/A 1.824±0.00 3.071±0.00 2.105±0.00 N/A 6.281±0.00 1.911±0.37 2.982±0.00 N/A 9.877±7.54 8.635±0.57 N/A
ENST00000427795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170860 ENST00000306024 8.407±0.00 10.716±0.00 1.965±0.00 8.071±0.87 7.556±3.46 6.387±3.30 5.452±2.57 7.639±1.75 3.869±0.48 5.067±2.39 4.497±0.80 10.636±8.27 18.241±11.90 27.933±10.90
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030094 ENSMUST00000032182 7.087±0.69 3.135±0.15 7.618±1.30 6.130±0.61 4.355±0.93 3.491±1.19 2.376±0.70 9.937±0.41 2.936±0.29 9.713±1.02 3.321±0.48 9.170±2.71 7.667±2.68 1.835±0.14
ENSMUST00000150279 N/A 0.521±0.06 N/A N/A 0.865±0.00 N/A N/A N/A N/A N/A N/A 1.019±0.00 N/A 0.254±0.00
ENSMUSG00000034192 ENSMUST00000040607 20.506±2.25 4.125±1.86 21.523±4.19 35.882±6.66 13.388±4.54 6.167±0.94 16.115±0.70 12.525±1.13 25.634±27.18 6.552±0.75 10.714±0.95 20.876±23.30 84.066±63.69 21.528±8.77
ENSMUST00000123569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126253 N/A N/A N/A 18.658±0.00 N/A N/A N/A N/A N/A N/A N/A 48.715±0.00 66.298±44.30 50.169±0.00

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