C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007HI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076568-ENSDARG00000055854 CGP 7955 16:29452307-29597577
GeneTranscriptPositionBiotype
ENSDARG00000055854 (nr4a3)
nuclear receptor subfamily 4, group A, member 3 		ENSDART00000078250 (nr4a3-001) 29573622-29597577 protein_coding
ENSDART00000142573 (nr4a3-002) 29577824-29591484 protein_coding
ENSDARG00000070399 (alg2)
asparagine-linked glycosylation 2 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase) 		ENSDART00000103257 (alg2-001) 29444177-29452485 protein_coding
ENSDART00000126347 (alg2-002) 29445196-29452239 protein_coding
ENSDARG00000076568 (sec61b)
Sec61 beta subunit 		ENSDART00000059013 (sec61b-001) 29452307-29459898 protein_coding
ENSDART00000136980 (sec61b-002) 29452608-29459807 protein_coding
ENSDART00000137408 (sec61b-004) 29452611-29455280 retained_intron
ENSDART00000146936 (sec61b-005) 29453423-29459813 processed_transcript
ENSDART00000147416 (sec61b-003) 29452775-29453484 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0007HI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106803-ENSG00000119508 CGP 9606 9:99222064-99866891
GeneTranscriptPositionBiotype
ENSG00000106803 (SEC61B)
Sec61 beta subunit 		ENST00000223641 (SEC61B-001) 99222301-99230615 protein_coding
ENST00000481573 (SEC61B-003) 99222315-99223180 processed_transcript
ENST00000498603 (SEC61B-002) 99222064-99230615 protein_coding
ENSG00000119508 (NR4A3)
nuclear receptor subfamily 4, group A, member 3 		ENST00000330847 (NR4A3-003) 99826727-99866891 protein_coding
ENST00000338488 (NR4A3-002) 99821855-99834059 protein_coding
ENST00000395097 (NR4A3-001) 99821855-99865051 protein_coding
ENST00000618101 (NR4A3-201) 99821855-99866891 protein_coding
ENSG00000222337 (RN7SKP225)
RNA, 7SK small nuclear pseudogene 225 		ENST00000410405 (RN7SKP225-201) 99284022-99284373 misc_RNA
ENSG00000234860 (RP11-547C13.1)
 ENST00000413271 (RP11-547C13.1-001) 99531696-99536924 lincRNA
ENSG00000237461 (RP11-554F20.1)
 ENST00000427039 (RP11-554F20.1-001) 99585786-99819889 lincRNA
ENSG00000255815 (KRT8P11)
keratin 8 pseudogene 11 		ENST00000409686 (KRT8P11-001) 99305176-99306611 processed_pseudogene
ENSG00000271086 (NAMA)
non-protein coding RNA, associated with MAP kinase pathway and growth arrest 		ENST00000603491 (NAMA-007) 99355337-99356264 lincRNA
ENST00000604009 (NAMA-005) 99374354-99375784 lincRNA
ENST00000604237 (NAMA-003) 99355344-99366472 lincRNA
ENST00000604258 (NAMA-001) 99355410-99375227 lincRNA
ENST00000605043 (NAMA-004) 99374354-99377240 lincRNA
ENST00000605377 (NAMA-002) 99355337-99368914 lincRNA
ENST00000605707 (NAMA-006) 99366417-99372512 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007HI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053317-ENSMUSG00000028341 CGP 10090 4:47474658-48086447
GeneTranscriptPositionBiotype
ENSMUSG00000028341 (Nr4a3)
nuclear receptor subfamily 4, group A, member 3 		ENSMUST00000030025 (Nr4a3-001) 48045153-48086445 protein_coding
ENSMUST00000133539 (Nr4a3-003) 48051248-48056739 processed_transcript
ENSMUST00000153369 (Nr4a3-004) 48049114-48086447 protein_coding
ENSMUST00000154186 (Nr4a3-002) 48045231-48050165 processed_transcript
ENSMUSG00000053317 (Sec61b)
Sec61 beta subunit 		ENSMUST00000065678 (Sec61b-001) 47474658-47483242 protein_coding
ENSMUST00000125622 (Sec61b-002) 47474808-47483094 protein_coding
ENSMUST00000136685 (Sec61b-004) 47474948-47480791 retained_intron
ENSMUST00000137461 (Sec61b-003) 47474764-47483128 protein_coding
ENSMUSG00000085660 (Gm12434)
predicted gene 12434 		ENSMUST00000141580 (Gm12434-001) 47996456-47998261 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007HI_0001ENSDARG00000055854ENSDART00000078250ENSDART00000142573ENSDARG00000070399ENSDART00000103257ENSDART00000126347ENSDARG00000076568ENSDART00000059013ENSDART00000136980ENSDART00000137408ENSDART00000146936ENSDART00000147416CIL_0007HI_0002ENSG00000106803ENST00000223641ENST00000481573ENST00000498603ENSG00000119508ENST00000330847ENST00000338488ENST00000395097ENST00000618101ENSG00000222337ENST00000410405ENSG00000234860ENST00000413271ENSG00000237461ENST00000427039ENSG00000255815ENST00000409686ENSG00000271086ENST00000603491ENST00000604009ENST00000604237ENST00000604258ENST00000605043ENST00000605377ENST00000605707CIL_0007HI_0003ENSMUSG00000028341ENSMUST00000030025ENSMUST00000133539ENSMUST00000153369ENSMUST00000154186ENSMUSG00000053317ENSMUST00000065678ENSMUST00000125622ENSMUST00000136685ENSMUST00000137461ENSMUSG00000085660ENSMUST00000141580
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007HI_0001ENSDARG00000055854ENSDART00000078250ENSDARG00000070399ENSDART00000103257ENSDARG00000076568ENSDART00000059013ENSDART00000136980ENSDART00000137408ENSDART00000146936CIL_0007HI_0002ENSG00000106803ENST00000223641ENST00000481573ENST00000498603ENSG00000119508ENST00000330847ENST00000338488ENST00000395097ENST00000618101ENSG00000222337ENST00000410405ENSG00000234860ENST00000413271ENSG00000237461ENST00000427039ENSG00000255815ENST00000409686ENSG00000271086ENST00000603491ENST00000604009ENST00000604237ENST00000604258ENST00000605043ENST00000605377ENST00000605707CIL_0007HI_0003ENSMUSG00000028341ENSMUST00000030025ENSMUST00000133539ENSMUST00000153369ENSMUST00000154186ENSMUSG00000053317ENSMUST00000065678ENSMUST00000137461ENSMUSG00000085660ENSMUST00000141580
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055854 ENSDART00000078250 N/A N/A N/A 0.960±0.00 N/A N/A 15.622±14.48 0.904±0.00 0.136±0.00 N/A 3.896±0.00 N/A N/A N/A
ENSDART00000142573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070399 ENSDART00000103257 N/A N/A N/A 3.459±1.89 N/A N/A 3.087±2.11 7.603±5.55 3.169±0.00 N/A N/A N/A N/A N/A
ENSDART00000126347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076568 ENSDART00000059013 N/A N/A N/A 14.175±6.96 N/A N/A 12.745±12.10 14.835±0.00 29.408±0.00 N/A 14.885±0.00 N/A N/A N/A
ENSDART00000136980 N/A N/A N/A N/A N/A N/A 50.043±0.00 N/A 22.638±0.00 N/A 15.898±0.00 N/A N/A N/A
ENSDART00000137408 N/A N/A N/A 0.711±0.00 N/A N/A 0.498±0.24 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146936 N/A N/A N/A 6.522±0.71 N/A N/A 23.665±0.00 36.617±4.53 N/A N/A 9.676±0.00 N/A N/A N/A
ENSDART00000147416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106803 ENST00000223641 34.696±0.00 55.546±0.00 4.109±0.00 16.096±7.54 24.696±17.40 27.324±15.45 12.037±10.45 58.386±30.49 92.750±85.70 46.328±41.06 7.490±6.66 79.932±48.04 96.084±28.43 39.562±18.69
ENST00000481573 N/A N/A 0.607±0.00 N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 0.848±0.00 N/A N/A
ENST00000498603 N/A N/A N/A N/A 2.084±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.596±0.00
ENSG00000119508 ENST00000330847 N/A N/A N/A 0.525±0.00 0.827±0.35 0.398±0.00 N/A N/A 0.026±0.00 N/A N/A 7.094±6.63 0.191±0.07 0.280±0.00
ENST00000338488 N/A N/A 2.465±0.00 0.996±0.00 N/A 0.472±0.00 0.528±0.00 N/A 2.060±0.00 N/A 8.059±0.00 N/A N/A N/A
ENST00000395097 N/A N/A 0.731±0.00 N/A N/A N/A 3.815±0.00 N/A N/A 0.719±0.00 7.099±0.00 3.932±2.84 0.163±0.03 0.791±0.00
ENST00000618101 N/A N/A N/A 0.377±0.00 0.298±0.00 0.362±0.00 6.644±0.00 N/A 0.060±0.00 14.244±0.00 N/A N/A 0.542±0.24 N/A
ENSG00000222337 ENST00000410405 N/A N/A N/A 1.062±0.00 N/A N/A N/A N/A N/A 0.141±0.00 N/A 0.111±0.00 N/A 0.109±0.00
ENSG00000234860 ENST00000413271 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.115±0.13
ENSG00000237461 ENST00000427039 N/A 0.048±0.00 N/A 0.210±0.00 0.072±0.00 N/A 0.040±0.03 0.047±0.00 0.334±0.00 N/A 0.068±0.00 0.015±0.00 0.024±0.00 0.500±0.00
ENSG00000255815 ENST00000409686 0.056±0.00 0.094±0.00 0.098±0.00 0.089±0.00 0.484±0.00 1.022±0.00 0.204±0.00 1.154±0.00 0.478±0.41 1.145±0.00 N/A 1.509±1.42 0.244±0.20 0.330±0.00
ENSG00000271086 ENST00000603491 N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A 0.042±0.00 0.097±0.06 N/A 0.366±0.00
ENST00000604009 N/A N/A 0.158±0.00 N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A
ENST00000604237 N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A 0.329±0.00 N/A N/A N/A N/A
ENST00000604258 N/A N/A N/A 0.038±0.00 0.007±0.00 N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000605043 N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A 0.270±0.00 N/A N/A N/A N/A N/A
ENST00000605377 N/A N/A N/A 0.321±0.20 N/A N/A N/A N/A N/A N/A N/A 0.318±0.00 N/A N/A
ENST00000605707 N/A N/A N/A 0.042±0.00 N/A N/A 0.034±0.00 0.082±0.00 N/A N/A N/A 0.017±0.00 0.041±0.02 0.059±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028341 ENSMUST00000030025 0.149±0.07 7.170±3.57 0.636±0.09 1.686±0.28 0.371±0.23 0.346±0.11 0.256±0.09 0.084±0.04 0.005±0.00 0.617±0.25 0.493±0.27 0.279±0.17 0.082±0.02 0.176±0.11
ENSMUST00000133539 0.129±0.00 10.295±2.56 N/A N/A 1.332±0.00 0.290±0.00 N/A 0.072±0.04 0.015±0.01 0.646±0.00 N/A 0.465±0.10 N/A 0.524±0.05
ENSMUST00000153369 0.164±0.00 N/A 0.331±0.05 0.779±0.00 0.354±0.17 N/A 0.109±0.00 0.123±0.00 0.008±0.00 N/A 0.240±0.10 0.426±0.51 0.102±0.06 0.048±0.00
ENSMUST00000154186 N/A N/A N/A N/A 0.839±0.00 0.327±0.00 N/A 0.117±0.05 0.016±0.01 N/A N/A 0.464±0.00 N/A N/A
ENSMUSG00000053317 ENSMUST00000065678 85.458±7.02 326.885±32.20 90.316±17.97 69.325±39.18 105.301±52.98 265.764±33.41 12.654±4.87 68.489±3.75 165.130±48.08 110.344±28.66 27.357±3.30 145.999±34.61 186.226±59.28 21.722±7.21
ENSMUST00000125622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 68.647±0.00 N/A
ENSMUSG00000085660 ENSMUST00000141580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.892±0.00

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