C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007K3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ONECUT1 UCNEbase 9606 15:52752889-53754980
GeneTranscriptPositionBiotype
ENSG00000166415 (WDR72)
WD repeat domain 72 		ENST00000360509 (WDR72-002) 53515163-53759662 protein_coding
ENST00000396328 (WDR72-001) 53513741-53762878 protein_coding
ENST00000557913 (WDR72-003) 53515159-53759634 protein_coding
ENST00000559418 (WDR72-005) 53517470-53733183 protein_coding
ENST00000560036 (WDR72-004) 53615881-53759384 protein_coding
ENST00000567224 (WDR72-007) 53513741-53541103 processed_transcript
ENST00000567575 (WDR72-006) 53665692-53684627 processed_transcript
ENST00000614174 (WDR72-201) 53513742-53541080 protein_coding
ENSG00000169856 (ONECUT1)
one cut homeobox 1 		ENST00000305901 (ONECUT1-001) 52756989-52790012 protein_coding
ENST00000560699 (ONECUT1-003) 52757440-52781183 protein_coding
ENST00000561401 (ONECUT1-002) 52757315-52791078 processed_transcript
ENST00000570208 (ONECUT1-004) 52785725-52789396 nonsense_mediated_decay
ENSG00000214896 (RPSAP55)
ribosomal protein SA pseudogene 55 		ENST00000477347 (RPSAP55-001) 52885595-52886470 processed_pseudogene
ENSG00000259203 (RP11-209K10.2)
 ENST00000560818 (RP11-209K10.2-001) 52801614-52804942 lincRNA
ENSG00000259237 (RP11-209E8.1)
 ENST00000559915 (RP11-209E8.1-001) 53116365-53129698 lincRNA
ENSG00000259612 (EEF1A1P22)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 22 		ENST00000559385 (EEF1A1P22-001) 52937139-52938518 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007K3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ONECUT1 UCNEbase 10090 9:74115980-74893866
GeneTranscriptPositionBiotype
ENSMUSG00000043013 (Onecut1)
one cut domain, family member 1 		ENSMUST00000056006 (Onecut1-001) 74861921-74891781 protein_coding
ENSMUST00000160499 (Onecut1-002) 74866484-74890360 processed_transcript
ENSMUSG00000044976 (Wdr72)
WD repeat domain 72 		ENSMUST00000055879 (Wdr72-002) 74110356-74283203 protein_coding
ENSMUST00000098564 (Wdr72-001) 74110356-74142880 processed_transcript
ENSMUST00000149439 (Wdr72-003) 74274134-74283308 processed_transcript
ENSMUST00000184725 (Wdr72-005) 74110404-74113679 processed_transcript
ENSMUSG00000066477 (Gm16551)
predicted gene 16551 		ENSMUST00000160017 (Gm16551-003) 74848526-74852872 lincRNA
ENSMUST00000160842 (Gm16551-004) 74848995-74851204 retained_intron
ENSMUST00000160979 (Gm16551-001) 74847983-74852873 lincRNA
ENSMUST00000161862 (Gm16551-002) 74848437-74860134 lincRNA
ENSMUST00000162089 (Gm16551-005) 74848503-74849367 retained_intron
ENSMUSG00000093662 (Gm20649)
predicted gene 20649 		ENSMUST00000160950 (Gm20649-001) 74848463-74891476 lincRNA
ENSMUSG00000098272 (Gm27233)
predicted gene 27233 		ENSMUST00000184030 (Gm27233-001) 74709262-74709568 processed_pseudogene
ENSMUSG00000101596 (RP23-157H17.3)
predicted gene 28182 		ENSMUST00000188354 (RP23-157H17.3-001) 74852909-74855385 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007K3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ONECUT1 UCNEbase 7955 18:36847319-37199395
GeneTranscriptPositionBiotype
ENSDARG00000007982 (onecut1)
one cut domain, family member 1 		ENSDART00000010177 (onecut1-001) 37192312-37197560 protein_coding
ENSDARG00000074442 (alx4b)
aristaless-like homeobox 4b 		ENSDART00000111260 (alx4b-201) 36758328-36998792 protein_coding
ENSDART00000132534 (alx4b-001) 36758328-36801751 protein_coding
ENSDARG00000093233 (si:ch211-215d8.2)
si:ch211-215d8.2 		ENSDART00000143735 (si:ch211-215d8.2-001) 37186836-37191791 lincRNA

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007K3_0001ENSG00000166415ENST00000360509ENST00000396328ENST00000557913ENST00000559418ENST00000560036ENST00000567224ENST00000567575ENST00000614174ENSG00000169856ENST00000305901ENST00000560699ENST00000561401ENST00000570208ENSG00000214896ENST00000477347ENSG00000259203ENST00000560818ENSG00000259237ENST00000559915ENSG00000259612ENST00000559385CIL_0007K3_0002ENSMUSG00000043013ENSMUST00000056006ENSMUST00000160499ENSMUSG00000044976ENSMUST00000055879ENSMUST00000098564ENSMUST00000149439ENSMUST00000184725ENSMUSG00000066477ENSMUST00000160017ENSMUST00000160842ENSMUST00000160979ENSMUST00000161862ENSMUST00000162089ENSMUSG00000093662ENSMUST00000160950ENSMUSG00000098272ENSMUST00000184030ENSMUSG00000101596ENSMUST00000188354CIL_0007K3_0003ENSDARG00000007982ENSDART00000010177ENSDARG00000074442ENSDART00000111260ENSDART00000132534ENSDARG00000093233ENSDART00000143735
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007K3_0001ENSG00000166415ENST00000360509ENST00000557913ENST00000559418ENST00000560036ENST00000567224ENST00000567575ENST00000614174ENSG00000169856ENST00000305901ENST00000560699ENST00000561401ENSG00000214896ENST00000477347ENSG00000259203ENST00000560818ENSG00000259237ENST00000559915ENSG00000259612ENST00000559385CIL_0007K3_0002ENSMUSG00000043013ENSMUST00000056006ENSMUST00000160499ENSMUSG00000044976ENSMUST00000055879ENSMUST00000098564ENSMUST00000149439ENSMUST00000184725ENSMUSG00000066477ENSMUST00000160017ENSMUST00000160979ENSMUSG00000093662ENSMUST00000160950ENSMUSG00000098272ENSMUST00000184030ENSMUSG00000101596ENSMUST00000188354CIL_0007K3_0003ENSDARG00000007982ENSDART00000010177ENSDARG00000074442ENSDART00000111260ENSDART00000132534ENSDARG00000093233ENSDART00000143735
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166415 ENST00000360509 N/A N/A 10.283±0.00 0.004±0.00 N/A 0.010±0.00 N/A 6.986±2.14 2.333±0.00 0.053±0.00 N/A 0.245±0.18 0.015±0.00 0.156±0.06
ENST00000396328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557913 N/A N/A N/A 0.013±0.01 N/A 0.010±0.00 N/A N/A N/A 0.009±0.00 N/A 0.175±0.02 0.015±0.00 N/A
ENST00000559418 N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560036 N/A N/A N/A 0.052±0.00 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A
ENST00000567224 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A 0.276±0.26 0.049±0.00 N/A
ENST00000567575 0.112±0.00 0.234±0.00 N/A 0.052±0.00 N/A N/A 0.042±0.00 N/A N/A 0.300±0.00 N/A N/A 0.351±0.00 N/A
ENST00000614174 N/A N/A N/A N/A 0.010±0.00 0.019±0.00 0.005±0.00 N/A 0.071±0.00 N/A N/A 0.050±0.00 0.083±0.06 0.131±0.06
ENSG00000169856 ENST00000305901 N/A N/A N/A 0.017±0.01 N/A 0.040±0.00 0.026±0.02 0.044±0.00 N/A N/A N/A 0.135±0.00 N/A 0.404±0.03
ENST00000560699 N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00
ENST00000561401 0.044±0.00 N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A 0.103±0.00 N/A 0.121±0.00 N/A N/A
ENST00000570208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214896 ENST00000477347 0.018±0.00 0.075±0.00 N/A 0.020±0.00 0.058±0.00 0.018±0.00 N/A 0.042±0.02 0.017±0.00 0.018±0.00 0.016±0.00 N/A 0.038±0.00 0.028±0.01
ENSG00000259203 ENST00000560818 N/A N/A N/A N/A N/A N/A N/A N/A 1.022±0.00 N/A N/A 0.106±0.00 N/A 0.348±0.04
ENSG00000259237 ENST00000559915 0.109±0.00 N/A N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A
ENSG00000259612 ENST00000559385 0.849±0.00 0.653±0.00 0.042±0.00 0.222±0.00 0.316±0.28 0.449±0.39 0.099±0.00 0.604±0.02 0.064±0.02 0.774±0.00 0.155±0.00 0.331±0.18 0.534±0.23 0.360±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043013 ENSMUST00000056006 0.007±0.00 0.014±0.01 0.006±0.00 0.125±0.00 0.050±0.00 0.031±0.01 N/A 0.007±0.00 9.538±5.12 N/A N/A 0.100±0.04 0.088±0.08 0.074±0.02
ENSMUST00000160499 N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A 7.676±3.52 N/A N/A 0.054±0.00 N/A N/A
ENSMUSG00000044976 ENSMUST00000055879 0.246±0.00 N/A 0.495±0.06 0.041±0.01 0.025±0.01 0.143±0.03 0.047±0.04 2.497±1.70 0.522±0.68 0.200±0.10 0.007±0.00 0.133±0.07 0.207±0.10 0.029±0.01
ENSMUST00000098564 N/A N/A N/A N/A N/A 0.084±0.00 0.029±0.00 N/A 0.012±0.00 N/A N/A 0.270±0.00 N/A N/A
ENSMUST00000149439 0.022±0.00 N/A 0.254±0.00 0.052±0.01 0.043±0.00 N/A N/A N/A N/A 0.556±0.00 0.020±0.01 N/A N/A 0.049±0.00
ENSMUST00000184725 0.169±0.00 N/A N/A N/A 0.120±0.08 N/A N/A N/A 0.472±0.47 0.104±0.00 N/A 0.137±0.05 N/A 0.059±0.00
ENSMUSG00000066477 ENSMUST00000160017 N/A N/A N/A N/A N/A N/A N/A N/A 12.476±11.67 N/A N/A N/A N/A N/A
ENSMUST00000160842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160979 0.087±0.02 0.131±0.04 0.010±0.00 0.519±0.42 0.212±0.17 0.044±0.02 0.059±0.03 0.043±0.02 11.157±0.00 0.110±0.07 N/A 0.763±0.36 0.043±0.03 0.093±0.04
ENSMUST00000161862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093662 ENSMUST00000160950 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A
ENSMUSG00000098272 ENSMUST00000184030 N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A 0.241±0.07 N/A N/A N/A N/A N/A
ENSMUSG00000101596 ENSMUST00000188354 N/A N/A N/A 0.086±0.00 N/A 0.037±0.01 N/A N/A 0.188±0.20 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007982 ENSDART00000010177 N/A N/A N/A 1.218±0.82 N/A N/A N/A 0.079±0.00 0.144±0.00 N/A 0.112±0.00 N/A N/A N/A
ENSDARG00000074442 ENSDART00000111260 N/A N/A N/A 0.028±0.00 N/A N/A 0.085±0.03 0.464±0.27 N/A N/A N/A N/A N/A N/A
ENSDART00000132534 N/A N/A N/A N/A N/A N/A 0.337±0.08 0.312±0.03 N/A N/A 0.067±0.00 N/A N/A N/A
ENSDARG00000093233 ENSDART00000143735 N/A N/A N/A 2.438±0.75 N/A N/A 0.130±0.00 N/A N/A N/A N/A N/A N/A N/A

Loading