Notice (8): Undefined index: CIL_0007KA_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000025796' => 'SEC63 homolog (S. cerevisiae)',
'ENSG00000081087' => 'osteopetrosis associated transmembrane protein 1',
'ENSG00000112320' => 'sine oculis binding protein homolog (Drosophila)',
'ENSG00000112333' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSG00000112335' => 'sorting nexin 3',
'ENSG00000135537' => 'lactation elevated 1',
'ENSG00000146285' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSG00000200799' => 'RNA, U6 small nuclear 770, pseudogene',
'ENSG00000206974' => 'RNA, U6 small nuclear 1144, pseudogene',
'ENSG00000212525' => 'RNA, 5S ribosomal pseudogene 212',
'ENSG00000224987' => null,
'ENSG00000225093' => 'ribosomal protein L3 pseudogene 7',
'ENSG00000225174' => 'OSTM1 antisense RNA 1',
'ENSG00000227072' => null,
'ENSG00000230248' => null,
'ENSG00000231112' => 'methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 3',
'ENSG00000232778' => 'ribosomal protein L23a pseudogene 50',
'ENSG00000233511' => null,
'ENSG00000238055' => null,
'ENSG00000238079' => null,
'ENSG00000238420' => 'RNA, U6 small nuclear 437, pseudogene',
'ENSG00000238490' => 'Y RNA',
'ENSG00000253090' => 'Small nucleolar RNA SNORA73 family',
'ENSG00000271734' => null,
'ENSG00000272476' => null,
'ENSG00000279398' => null,
'ENSG00000279498' => null,
'ENSG00000280135' => null,
'ENSMUSG00000019802' => 'SEC63-like (S. cerevisiae)',
'ENSMUSG00000019803' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSMUSG00000019804' => 'sorting nexin 3',
'ENSMUSG00000038248' => 'sine oculis-binding protein homolog (Drosophila)',
'ENSMUSG00000038280' => 'osteopetrosis associated transmembrane protein 1',
'ENSMUSG00000038302' => 'lactation elevated 1',
'ENSMUSG00000044770' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSMUSG00000083429' => 'predicted gene 15198',
'ENSMUSG00000086428' => 'predicted gene 15199',
'ENSMUSG00000086434' => 'predicted gene 15200',
'ENSMUSG00000087719' => 'predicted gene, 26464',
'ENSMUSG00000087891' => 'predicted gene, 25277',
'ENSMUSG00000097008' => 'predicted gene, 26860'
),
'gene_name_arr' => array(
'ENSG00000025796' => 'SEC63',
'ENSG00000081087' => 'OSTM1',
'ENSG00000112320' => 'SOBP',
'ENSG00000112333' => 'NR2E1',
'ENSG00000112335' => 'SNX3',
'ENSG00000135537' => 'LACE1',
'ENSG00000146285' => 'SCML4',
'ENSG00000200799' => 'RNU6-770P',
'ENSG00000206974' => 'RNU6-1144P',
'ENSG00000212525' => 'RNA5SP212',
'ENSG00000224987' => 'RP1-191J18.65',
'ENSG00000225093' => 'RPL3P7',
'ENSG00000225174' => 'OSTM1-AS1',
'ENSG00000227072' => 'RP3-466I7.1',
'ENSG00000230248' => 'RP1-128O3.4',
'ENSG00000231112' => 'MTHFD2P3',
'ENSG00000232778' => 'RPL23AP50',
'ENSG00000233511' => 'RP1-128O3.5',
'ENSG00000238055' => 'RP1-128O3.6',
'ENSG00000238079' => 'RP11-72I2.1',
'ENSG00000238420' => 'RNU6-437P',
'ENSG00000238490' => 'Y_RNA',
'ENSG00000253090' => 'SNORA73',
'ENSG00000271734' => 'RP1-111B22.3',
'ENSG00000272476' => 'RP1-191J18.66',
'ENSG00000279398' => 'RP3-429G5.5',
'ENSG00000279498' => 'RP11-72I2.2',
'ENSG00000280135' => 'RP1-47M23.3',
'ENSMUSG00000019802' => 'Sec63',
'ENSMUSG00000019803' => 'Nr2e1',
'ENSMUSG00000019804' => 'Snx3',
'ENSMUSG00000038248' => 'Sobp',
'ENSMUSG00000038280' => 'Ostm1',
'ENSMUSG00000038302' => 'Lace1',
'ENSMUSG00000044770' => 'Scml4',
'ENSMUSG00000083429' => 'Gm15198',
'ENSMUSG00000086428' => 'Gm15199',
'ENSMUSG00000086434' => 'Gm15200',
'ENSMUSG00000087719' => 'Gm26464',
'ENSMUSG00000087891' => 'Gm25277',
'ENSMUSG00000097008' => 'Gm26860'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 87 => 'Brain',
(int) 126 => 'Breast',
(int) 168 => 'Colon',
(int) 203 => 'Heart',
(int) 233 => 'Kidney',
(int) 272 => 'Liver',
(int) 313 => 'Lung',
(int) 347 => 'Muscle',
(int) 372 => 'Ovary',
(int) 423 => 'Placenta',
(int) 466 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 107,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000369002' => array(
'start' => '107867756',
'end' => '107958189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-001'
),
'ENST00000429168' => array(
'start' => '107909008',
'end' => '107957340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-007'
),
'ENST00000446496' => array(
'start' => '107924818',
'end' => '107958111',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SEC63-010'
),
'ENST00000459782' => array(
'start' => '107870765',
'end' => '107877400',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-004'
),
'ENST00000460009' => array(
'start' => '107954584',
'end' => '107958042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SEC63-002'
),
'ENST00000465210' => array(
'start' => '107880960',
'end' => '107883112',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-009'
),
'ENST00000466419' => array(
'start' => '107893580',
'end' => '107902900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-003'
),
'ENST00000473746' => array(
'start' => '107872885',
'end' => '107883467',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-008'
),
'ENST00000484803' => array(
'start' => '107911168',
'end' => '107957931',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-005'
),
'ENST00000489455' => array(
'start' => '107906465',
'end' => '107909159',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-006'
),
'ENST00000193322' => array(
'start' => '108041409',
'end' => '108074737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-001'
),
'ENST00000440575' => array(
'start' => '108044831',
'end' => '108165840',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-006'
),
'ENST00000467960' => array(
'start' => '108064185',
'end' => '108074741',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-002'
),
'ENST00000472669' => array(
'start' => '108044379',
'end' => '108051066',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-005'
),
'ENST00000477774' => array(
'start' => '108044733',
'end' => '108049668',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-004'
),
'ENST00000492070' => array(
'start' => '108122336',
'end' => '108165854',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-007'
),
'ENST00000492130' => array(
'start' => '108041472',
'end' => '108044238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-003'
),
'ENST00000317357' => array(
'start' => '107489958',
'end' => '107660167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-001'
),
'ENST00000477448' => array(
'start' => '107490106',
'end' => '107558287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOBP-002'
),
'ENST00000494935' => array(
'start' => '107634990',
'end' => '107636316',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOBP-003'
),
'ENST00000618129' => array(
'start' => '107490604',
'end' => '107515073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-201'
),
'ENST00000368983' => array(
'start' => '108168023',
'end' => '108188802',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-002'
),
'ENST00000368986' => array(
'start' => '108166058',
'end' => '108188809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-001'
),
'ENST00000426403' => array(
'start' => '108168763',
'end' => '108176626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-003'
),
'ENST00000484978' => array(
'start' => '108176104',
'end' => '108178147',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NR2E1-004'
),
'ENST00000230085' => array(
'start' => '108211222',
'end' => '108261260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-001'
),
'ENST00000349379' => array(
'start' => '108212005',
'end' => '108261244',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-003'
),
'ENST00000368979' => array(
'start' => '108211513',
'end' => '108261246',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX3-002'
),
'ENST00000426155' => array(
'start' => '108211513',
'end' => '108260964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-004'
),
'ENST00000368977' => array(
'start' => '108294894',
'end' => '108526001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-001'
),
'ENST00000421954' => array(
'start' => '108295201',
'end' => '108523117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-006'
),
'ENST00000430458' => array(
'start' => '108294991',
'end' => '108346990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-004'
),
'ENST00000431865' => array(
'start' => '108356690',
'end' => '108522334',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LACE1-002'
),
'ENST00000437715' => array(
'start' => '108295753',
'end' => '108356751',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-007'
),
'ENST00000481842' => array(
'start' => '108523137',
'end' => '108526796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-005'
),
'ENST00000486863' => array(
'start' => '108476979',
'end' => '108522465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LACE1-003'
),
'ENST00000369020' => array(
'start' => '107705200',
'end' => '107824312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-005'
),
'ENST00000369021' => array(
'start' => '107718954',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-201'
),
'ENST00000369022' => array(
'start' => '107704104',
'end' => '107824317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-008'
),
'ENST00000369025' => array(
'start' => '107704651',
'end' => '107732395',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-002'
),
'ENST00000426221' => array(
'start' => '107740065',
'end' => '107824286',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SCML4-006'
),
'ENST00000440927' => array(
'start' => '107744949',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-007'
),
'ENST00000459992' => array(
'start' => '107719730',
'end' => '107772251',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-009'
),
'ENST00000463507' => array(
'start' => '107720671',
'end' => '107824294',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-004'
),
'ENST00000473515' => array(
'start' => '107718955',
'end' => '107824312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-001'
),
'ENST00000476798' => array(
'start' => '107718445',
'end' => '107732103',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-010'
),
'ENST00000479803' => array(
'start' => '107720709',
'end' => '107744054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SCML4-003'
),
'ENST00000363929' => array(
'start' => '108392073',
'end' => '108392177',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-770P-201'
),
'ENST00000384247' => array(
'start' => '108292766',
'end' => '108292869',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1144P-201'
),
'ENST00000391223' => array(
'start' => '108252401',
'end' => '108252507',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP212-201'
),
'ENST00000412741' => array(
'start' => '107985089',
'end' => '107985690',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-191J18.65-001'
),
'ENST00000417878' => array(
'start' => '108004357',
'end' => '108005568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL3P7-001'
),
'ENST00000426008' => array(
'start' => '108123515',
'end' => '108156698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-002'
),
'ENST00000441184' => array(
'start' => '108123633',
'end' => '108159392',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-001'
),
'ENST00000436728' => array(
'start' => '108387512',
'end' => '108388080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-466I7.1-001'
),
'ENST00000419801' => array(
'start' => '108275642',
'end' => '108276546',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-128O3.4-001'
),
'ENST00000423135' => array(
'start' => '107985811',
'end' => '107986031',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTHFD2P3-001'
),
'ENST00000434149' => array(
'start' => '107931800',
'end' => '107932254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23AP50-001'
),
'ENST00000431564' => array(
'start' => '108252214',
'end' => '108252400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.5-001'
),
'ENST00000418637' => array(
'start' => '108318079',
'end' => '108318404',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.6-001'
),
'ENST00000442911' => array(
'start' => '108372772',
'end' => '108372927',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-72I2.1-001'
),
'ENST00000459408' => array(
'start' => '107930088',
'end' => '107930182',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-437P-201'
),
'ENST00000364811' => array(
'start' => '108060818',
'end' => '108060930',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-837'
),
'ENST00000517281' => array(
'start' => '107985659',
'end' => '107985773',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA73.1-204'
),
'ENST00000607298' => array(
'start' => '108030249',
'end' => '108030718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-111B22.3-001'
),
'ENST00000606070' => array(
'start' => '107957413',
'end' => '107959986',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-191J18.66-001'
),
'ENST00000624856' => array(
'start' => '108178871',
'end' => '108179317',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP3-429G5.5-001'
),
'ENST00000624715' => array(
'start' => '108359084',
'end' => '108359863',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-72I2.2-001'
),
'ENST00000623300' => array(
'start' => '107697299',
'end' => '107700218',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP1-47M23.3-001'
),
'ENSMUST00000019937' => array(
'start' => '42761496',
'end' => '42832514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sec63-001'
),
'ENSMUST00000105496' => array(
'start' => '42817928',
'end' => '42829283',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-005'
),
'ENSMUST00000124613' => array(
'start' => '42817928',
'end' => '42829280',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-004'
),
'ENSMUST00000144228' => array(
'start' => '42761806',
'end' => '42812742',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-003'
),
'ENSMUST00000155410' => array(
'start' => '42761615',
'end' => '42830392',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-002'
),
'ENSMUST00000019938' => array(
'start' => '42561963',
'end' => '42583632',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-001'
),
'ENSMUST00000105498' => array(
'start' => '42563272',
'end' => '42568828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-002'
),
'ENSMUST00000126848' => array(
'start' => '42571484',
'end' => '42580345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-003'
),
'ENSMUST00000143891' => array(
'start' => '42572858',
'end' => '42580774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-004'
),
'ENSMUST00000019939' => array(
'start' => '42502031',
'end' => '42535370',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-001'
),
'ENSMUST00000105499' => array(
'start' => '42502290',
'end' => '42535381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-003'
),
'ENSMUST00000105500' => array(
'start' => '42502030',
'end' => '42534787',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-002'
),
'ENSMUST00000040275' => array(
'start' => '43002500',
'end' => '43174530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-001'
),
'ENSMUST00000189987' => array(
'start' => '43172974',
'end' => '43174521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-002'
),
'ENSMUST00000040718' => array(
'start' => '42678916',
'end' => '42702459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-004'
),
'ENSMUST00000105497' => array(
'start' => '42583835',
'end' => '42698323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-003'
),
'ENSMUST00000144806' => array(
'start' => '42583838',
'end' => '42700492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-002'
),
'ENSMUST00000147899' => array(
'start' => '42583822',
'end' => '42584731',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ostm1-001'
),
'ENSMUST00000154048' => array(
'start' => '42678966',
'end' => '42699991',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ostm1-005'
),
'ENSMUST00000041024' => array(
'start' => '42312585',
'end' => '42478565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-001'
),
'ENSMUST00000133326' => array(
'start' => '42312588',
'end' => '42478415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-003'
),
'ENSMUST00000149832' => array(
'start' => '42313582',
'end' => '42425308',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-004'
),
'ENSMUST00000151747' => array(
'start' => '42312585',
'end' => '42478280',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-002'
),
'ENSMUST00000063063' => array(
'start' => '42860370',
'end' => '42960780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-002'
),
'ENSMUST00000105494' => array(
'start' => '42860793',
'end' => '42960778',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-003'
),
'ENSMUST00000105495' => array(
'start' => '42860667',
'end' => '42934361',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-001'
),
'ENSMUST00000125576' => array(
'start' => '42902473',
'end' => '42935139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-008'
),
'ENSMUST00000127675' => array(
'start' => '42939881',
'end' => '42958721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Scml4-006'
),
'ENSMUST00000130511' => array(
'start' => '42934338',
'end' => '42958770',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-004'
),
'ENSMUST00000136841' => array(
'start' => '42865514',
'end' => '42930419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-007'
),
'ENSMUST00000153091' => array(
'start' => '42934916',
'end' => '42948199',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-005'
),
'ENSMUST00000157071' => array(
'start' => '42860543',
'end' => '42930554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-009'
),
'ENSMUST00000117283' => array(
'start' => '42435880',
'end' => '42436065',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15198-001'
),
'ENSMUST00000129933' => array(
'start' => '42740539',
'end' => '42758660',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15199-001'
),
'ENSMUST00000149950' => array(
'start' => '42698036',
'end' => '42698518',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15200-001'
),
'ENSMUST00000157094' => array(
'start' => '42820463',
'end' => '42820767',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26464-201'
),
'ENSMUST00000157266' => array(
'start' => '42493423',
'end' => '42493746',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm25277-201'
),
'ENSMUST00000181674' => array(
'start' => '42761596',
'end' => '42763635',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26860-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
'ENSG00000025796' => array(
[maximum depth reached]
),
'ENSG00000081087' => array(
[maximum depth reached]
),
'ENSG00000112320' => array(
[maximum depth reached]
),
'ENSG00000112333' => array(
[maximum depth reached]
),
'ENSG00000112335' => array(
[maximum depth reached]
),
'ENSG00000135537' => array(
[maximum depth reached]
),
'ENSG00000146285' => array(
[maximum depth reached]
),
'ENSG00000212525' => array(
[maximum depth reached]
),
'ENSG00000224987' => array(
[maximum depth reached]
),
'ENSG00000225093' => array(
[maximum depth reached]
),
'ENSG00000225174' => array(
[maximum depth reached]
),
'ENSG00000227072' => array(
[maximum depth reached]
),
'ENSG00000230248' => array(
[maximum depth reached]
),
'ENSG00000232778' => array(
[maximum depth reached]
),
'ENSG00000233511' => array(
[maximum depth reached]
),
'ENSG00000238055' => array(
[maximum depth reached]
),
'ENSG00000238079' => array(
[maximum depth reached]
),
'ENSG00000238420' => array(
[maximum depth reached]
),
'ENSG00000238490' => array(
[maximum depth reached]
),
'ENSG00000271734' => array(
[maximum depth reached]
),
'ENSG00000279398' => array(
[maximum depth reached]
),
'ENSG00000279498' => array(
[maximum depth reached]
),
'ENSG00000280135' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Bladder',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Brain',
(int) 90 => 'Ovary',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Kidney',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Adipose',
(int) 115 => 'Colon',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Brain',
(int) 121 => 'Breast',
(int) 122 => 'Colon',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Lung',
(int) 127 => 'Muscle',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Muscle',
(int) 140 => 'Ovary',
(int) 141 => 'Placenta',
(int) 142 => 'Testis',
(int) 143 => 'Adrenal',
(int) 144 => 'Bladder',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Muscle',
(int) 154 => 'Ovary',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Testis',
(int) 167 => 'Adipose',
(int) 168 => 'Heart',
(int) 169 => 'Adrenal',
(int) 170 => 'Bladder',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Muscle',
(int) 174 => 'Kidney',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Brain',
(int) 179 => 'Breast',
(int) 180 => 'Colon',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Liver',
(int) 184 => 'Lung',
(int) 185 => 'Ovary',
(int) 186 => 'Placenta',
(int) 187 => 'Bladder',
(int) 188 => 'Breast',
(int) 189 => 'Lung',
(int) 190 => 'Ovary',
(int) 191 => 'Placenta',
(int) 192 => 'Testis',
(int) 193 => 'Placenta',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Kidney',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Testis',
(int) 201 => 'Adipose',
(int) 202 => 'Brain',
(int) 203 => 'Breast',
(int) 204 => 'Colon',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Testis',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Adrenal',
(int) 216 => 'Colon',
(int) 217 => 'Adrenal',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Kidney',
(int) 221 => 'Testis',
(int) 222 => 'Adipose',
(int) 223 => 'Adrenal',
(int) 224 => 'Brain',
(int) 225 => 'Breast',
(int) 226 => 'Colon',
(int) 227 => 'Heart',
(int) 228 => 'Kidney',
(int) 229 => 'Liver',
(int) 230 => 'Lung',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Placenta',
(int) 234 => 'Testis',
(int) 235 => 'Brain',
(int) 236 => 'Testis',
(int) 237 => 'Kidney',
(int) 238 => 'Liver',
(int) 239 => 'Ovary',
(int) 240 => 'Testis',
(int) 241 => 'Adrenal',
(int) 242 => 'Brain',
(int) 243 => 'Breast',
(int) 244 => 'Liver',
(int) 245 => 'Lung',
(int) 246 => 'Ovary',
(int) 247 => 'Testis',
(int) 248 => 'Bladder',
(int) 249 => 'Breast',
(int) 250 => 'Heart',
(int) 251 => 'Kidney',
(int) 252 => 'Liver',
(int) 253 => 'Ovary',
(int) 254 => 'Testis',
(int) 255 => 'Adrenal',
(int) 256 => 'Heart',
(int) 257 => 'Muscle',
(int) 258 => 'Adrenal',
(int) 259 => 'Brain',
(int) 260 => 'Breast',
(int) 261 => 'Colon',
(int) 262 => 'Heart',
(int) 263 => 'Liver',
(int) 264 => 'Lung',
(int) 265 => 'Ovary',
(int) 266 => 'Placenta',
(int) 267 => 'Testis',
(int) 268 => 'Brain',
(int) 269 => 'Testis',
(int) 270 => 'Brain',
(int) 271 => 'Kidney',
(int) 272 => 'Ovary',
(int) 273 => 'Testis',
(int) 274 => 'Adipose',
(int) 275 => 'Adrenal',
(int) 276 => 'Brain',
(int) 277 => 'Colon',
(int) 278 => 'Kidney',
(int) 279 => 'Muscle',
(int) 280 => 'Ovary',
(int) 281 => 'Placenta',
(int) 282 => 'Testis',
(int) 283 => 'Brain',
(int) 284 => 'Ovary',
(int) 285 => 'Adrenal',
(int) 286 => 'Breast',
(int) 287 => 'Heart',
(int) 288 => 'Liver',
(int) 289 => 'Ovary',
(int) 290 => 'Adrenal',
(int) 291 => 'Brain',
(int) 292 => 'Breast',
(int) 293 => 'Colon',
(int) 294 => 'Kidney',
(int) 295 => 'Liver',
(int) 296 => 'Lung',
(int) 297 => 'Ovary',
(int) 298 => 'Placenta',
(int) 299 => 'Testis'
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000019802' => array(
[maximum depth reached]
),
'ENSMUSG00000019803' => array(
[maximum depth reached]
),
'ENSMUSG00000019804' => array(
[maximum depth reached]
),
'ENSMUSG00000038248' => array(
[maximum depth reached]
),
'ENSMUSG00000038280' => array(
[maximum depth reached]
),
'ENSMUSG00000038302' => array(
[maximum depth reached]
),
'ENSMUSG00000044770' => array(
[maximum depth reached]
),
'ENSMUSG00000083429' => array(
[maximum depth reached]
),
'ENSMUSG00000086428' => array(
[maximum depth reached]
),
'ENSMUSG00000087719' => array(
[maximum depth reached]
),
'ENSMUSG00000087891' => array(
[maximum depth reached]
),
'ENSMUSG00000097008' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Testis',
(int) 20 => 'Adrenal',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Liver',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Ovary',
(int) 29 => 'Testis',
(int) 30 => 'Liver',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Colon',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Brain',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Bladder',
(int) 116 => 'Brain',
(int) 117 => 'Breast',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Adipose',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Kidney',
(int) 134 => 'Liver',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Brain',
(int) 141 => 'Breast',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Liver',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Kidney',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Adrenal',
(int) 154 => 'Breast',
(int) 155 => 'Kidney',
(int) 156 => 'Liver',
(int) 157 => 'Lung',
(int) 158 => 'Adipose',
(int) 159 => 'Colon',
(int) 160 => 'Kidney',
(int) 161 => 'Liver',
(int) 162 => 'Ovary',
(int) 163 => 'Placenta',
(int) 164 => 'Testis',
(int) 165 => 'Adipose',
(int) 166 => 'Adrenal',
(int) 167 => 'Bladder',
(int) 168 => 'Breast',
(int) 169 => 'Heart',
(int) 170 => 'Kidney',
(int) 171 => 'Liver',
(int) 172 => 'Lung',
(int) 173 => 'Muscle',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Kidney',
(int) 177 => 'Liver',
(int) 178 => 'Lung',
(int) 179 => 'Muscle',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Adipose',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Kidney',
(int) 186 => 'Liver',
(int) 187 => 'Ovary',
(int) 188 => 'Placenta',
(int) 189 => 'Adipose',
(int) 190 => 'Brain',
(int) 191 => 'Breast',
(int) 192 => 'Colon',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Ovary',
(int) 196 => 'Placenta',
(int) 197 => 'Testis',
(int) 198 => 'Adipose',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Ovary',
(int) 209 => 'Placenta',
(int) 210 => 'Testis',
(int) 211 => 'Placenta',
(int) 212 => 'Ovary'
)
)
)
$gene_desc_arr = array(
'ENSG00000025796' => 'SEC63 homolog (S. cerevisiae)',
'ENSG00000081087' => 'osteopetrosis associated transmembrane protein 1',
'ENSG00000112320' => 'sine oculis binding protein homolog (Drosophila)',
'ENSG00000112333' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSG00000112335' => 'sorting nexin 3',
'ENSG00000135537' => 'lactation elevated 1',
'ENSG00000146285' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSG00000200799' => 'RNA, U6 small nuclear 770, pseudogene',
'ENSG00000206974' => 'RNA, U6 small nuclear 1144, pseudogene',
'ENSG00000212525' => 'RNA, 5S ribosomal pseudogene 212',
'ENSG00000224987' => null,
'ENSG00000225093' => 'ribosomal protein L3 pseudogene 7',
'ENSG00000225174' => 'OSTM1 antisense RNA 1',
'ENSG00000227072' => null,
'ENSG00000230248' => null,
'ENSG00000231112' => 'methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 3',
'ENSG00000232778' => 'ribosomal protein L23a pseudogene 50',
'ENSG00000233511' => null,
'ENSG00000238055' => null,
'ENSG00000238079' => null,
'ENSG00000238420' => 'RNA, U6 small nuclear 437, pseudogene',
'ENSG00000238490' => 'Y RNA',
'ENSG00000253090' => 'Small nucleolar RNA SNORA73 family',
'ENSG00000271734' => null,
'ENSG00000272476' => null,
'ENSG00000279398' => null,
'ENSG00000279498' => null,
'ENSG00000280135' => null,
'ENSMUSG00000019802' => 'SEC63-like (S. cerevisiae)',
'ENSMUSG00000019803' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSMUSG00000019804' => 'sorting nexin 3',
'ENSMUSG00000038248' => 'sine oculis-binding protein homolog (Drosophila)',
'ENSMUSG00000038280' => 'osteopetrosis associated transmembrane protein 1',
'ENSMUSG00000038302' => 'lactation elevated 1',
'ENSMUSG00000044770' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSMUSG00000083429' => 'predicted gene 15198',
'ENSMUSG00000086428' => 'predicted gene 15199',
'ENSMUSG00000086434' => 'predicted gene 15200',
'ENSMUSG00000087719' => 'predicted gene, 26464',
'ENSMUSG00000087891' => 'predicted gene, 25277',
'ENSMUSG00000097008' => 'predicted gene, 26860'
)
$gene_name_arr = array(
'ENSG00000025796' => 'SEC63',
'ENSG00000081087' => 'OSTM1',
'ENSG00000112320' => 'SOBP',
'ENSG00000112333' => 'NR2E1',
'ENSG00000112335' => 'SNX3',
'ENSG00000135537' => 'LACE1',
'ENSG00000146285' => 'SCML4',
'ENSG00000200799' => 'RNU6-770P',
'ENSG00000206974' => 'RNU6-1144P',
'ENSG00000212525' => 'RNA5SP212',
'ENSG00000224987' => 'RP1-191J18.65',
'ENSG00000225093' => 'RPL3P7',
'ENSG00000225174' => 'OSTM1-AS1',
'ENSG00000227072' => 'RP3-466I7.1',
'ENSG00000230248' => 'RP1-128O3.4',
'ENSG00000231112' => 'MTHFD2P3',
'ENSG00000232778' => 'RPL23AP50',
'ENSG00000233511' => 'RP1-128O3.5',
'ENSG00000238055' => 'RP1-128O3.6',
'ENSG00000238079' => 'RP11-72I2.1',
'ENSG00000238420' => 'RNU6-437P',
'ENSG00000238490' => 'Y_RNA',
'ENSG00000253090' => 'SNORA73',
'ENSG00000271734' => 'RP1-111B22.3',
'ENSG00000272476' => 'RP1-191J18.66',
'ENSG00000279398' => 'RP3-429G5.5',
'ENSG00000279498' => 'RP11-72I2.2',
'ENSG00000280135' => 'RP1-47M23.3',
'ENSMUSG00000019802' => 'Sec63',
'ENSMUSG00000019803' => 'Nr2e1',
'ENSMUSG00000019804' => 'Snx3',
'ENSMUSG00000038248' => 'Sobp',
'ENSMUSG00000038280' => 'Ostm1',
'ENSMUSG00000038302' => 'Lace1',
'ENSMUSG00000044770' => 'Scml4',
'ENSMUSG00000083429' => 'Gm15198',
'ENSMUSG00000086428' => 'Gm15199',
'ENSMUSG00000086434' => 'Gm15200',
'ENSMUSG00000087719' => 'Gm26464',
'ENSMUSG00000087891' => 'Gm25277',
'ENSMUSG00000097008' => 'Gm26860'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0001',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '107632412',
'seq_end' => '108443377',
'region_length' => '810965',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0002',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '108443378',
'seq_end' => '108477256',
'region_length' => '33878',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0003',
'tax_id' => '10090',
'chromosome' => '10',
'seq_start' => '42339928',
'seq_end' => '43024116',
'region_length' => '684188',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0004',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '32511818',
'seq_end' => '32514594',
'region_length' => '2776',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 87 => 'Brain',
(int) 126 => 'Breast',
(int) 168 => 'Colon',
(int) 203 => 'Heart',
(int) 233 => 'Kidney',
(int) 272 => 'Liver',
(int) 313 => 'Lung',
(int) 347 => 'Muscle',
(int) 372 => 'Ovary',
(int) 423 => 'Placenta',
(int) 466 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 107
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000369002' => array(
'start' => '107867756',
'end' => '107958189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-001'
),
'ENST00000429168' => array(
'start' => '107909008',
'end' => '107957340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-007'
),
'ENST00000446496' => array(
'start' => '107924818',
'end' => '107958111',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SEC63-010'
),
'ENST00000459782' => array(
'start' => '107870765',
'end' => '107877400',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-004'
),
'ENST00000460009' => array(
'start' => '107954584',
'end' => '107958042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SEC63-002'
),
'ENST00000465210' => array(
'start' => '107880960',
'end' => '107883112',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-009'
),
'ENST00000466419' => array(
'start' => '107893580',
'end' => '107902900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-003'
),
'ENST00000473746' => array(
'start' => '107872885',
'end' => '107883467',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-008'
),
'ENST00000484803' => array(
'start' => '107911168',
'end' => '107957931',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-005'
),
'ENST00000489455' => array(
'start' => '107906465',
'end' => '107909159',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-006'
),
'ENST00000193322' => array(
'start' => '108041409',
'end' => '108074737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-001'
),
'ENST00000440575' => array(
'start' => '108044831',
'end' => '108165840',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-006'
),
'ENST00000467960' => array(
'start' => '108064185',
'end' => '108074741',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-002'
),
'ENST00000472669' => array(
'start' => '108044379',
'end' => '108051066',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-005'
),
'ENST00000477774' => array(
'start' => '108044733',
'end' => '108049668',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-004'
),
'ENST00000492070' => array(
'start' => '108122336',
'end' => '108165854',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-007'
),
'ENST00000492130' => array(
'start' => '108041472',
'end' => '108044238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-003'
),
'ENST00000317357' => array(
'start' => '107489958',
'end' => '107660167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-001'
),
'ENST00000477448' => array(
'start' => '107490106',
'end' => '107558287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOBP-002'
),
'ENST00000494935' => array(
'start' => '107634990',
'end' => '107636316',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOBP-003'
),
'ENST00000618129' => array(
'start' => '107490604',
'end' => '107515073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-201'
),
'ENST00000368983' => array(
'start' => '108168023',
'end' => '108188802',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-002'
),
'ENST00000368986' => array(
'start' => '108166058',
'end' => '108188809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-001'
),
'ENST00000426403' => array(
'start' => '108168763',
'end' => '108176626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-003'
),
'ENST00000484978' => array(
'start' => '108176104',
'end' => '108178147',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NR2E1-004'
),
'ENST00000230085' => array(
'start' => '108211222',
'end' => '108261260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-001'
),
'ENST00000349379' => array(
'start' => '108212005',
'end' => '108261244',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-003'
),
'ENST00000368979' => array(
'start' => '108211513',
'end' => '108261246',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX3-002'
),
'ENST00000426155' => array(
'start' => '108211513',
'end' => '108260964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-004'
),
'ENST00000368977' => array(
'start' => '108294894',
'end' => '108526001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-001'
),
'ENST00000421954' => array(
'start' => '108295201',
'end' => '108523117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-006'
),
'ENST00000430458' => array(
'start' => '108294991',
'end' => '108346990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-004'
),
'ENST00000431865' => array(
'start' => '108356690',
'end' => '108522334',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LACE1-002'
),
'ENST00000437715' => array(
'start' => '108295753',
'end' => '108356751',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-007'
),
'ENST00000481842' => array(
'start' => '108523137',
'end' => '108526796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-005'
),
'ENST00000486863' => array(
'start' => '108476979',
'end' => '108522465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LACE1-003'
),
'ENST00000369020' => array(
'start' => '107705200',
'end' => '107824312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-005'
),
'ENST00000369021' => array(
'start' => '107718954',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-201'
),
'ENST00000369022' => array(
'start' => '107704104',
'end' => '107824317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-008'
),
'ENST00000369025' => array(
'start' => '107704651',
'end' => '107732395',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-002'
),
'ENST00000426221' => array(
'start' => '107740065',
'end' => '107824286',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SCML4-006'
),
'ENST00000440927' => array(
'start' => '107744949',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-007'
),
'ENST00000459992' => array(
'start' => '107719730',
'end' => '107772251',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-009'
),
'ENST00000463507' => array(
'start' => '107720671',
'end' => '107824294',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-004'
),
'ENST00000473515' => array(
'start' => '107718955',
'end' => '107824312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-001'
),
'ENST00000476798' => array(
'start' => '107718445',
'end' => '107732103',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-010'
),
'ENST00000479803' => array(
'start' => '107720709',
'end' => '107744054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SCML4-003'
),
'ENST00000363929' => array(
'start' => '108392073',
'end' => '108392177',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-770P-201'
),
'ENST00000384247' => array(
'start' => '108292766',
'end' => '108292869',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1144P-201'
),
'ENST00000391223' => array(
'start' => '108252401',
'end' => '108252507',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP212-201'
),
'ENST00000412741' => array(
'start' => '107985089',
'end' => '107985690',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-191J18.65-001'
),
'ENST00000417878' => array(
'start' => '108004357',
'end' => '108005568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL3P7-001'
),
'ENST00000426008' => array(
'start' => '108123515',
'end' => '108156698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-002'
),
'ENST00000441184' => array(
'start' => '108123633',
'end' => '108159392',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-001'
),
'ENST00000436728' => array(
'start' => '108387512',
'end' => '108388080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-466I7.1-001'
),
'ENST00000419801' => array(
'start' => '108275642',
'end' => '108276546',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-128O3.4-001'
),
'ENST00000423135' => array(
'start' => '107985811',
'end' => '107986031',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTHFD2P3-001'
),
'ENST00000434149' => array(
'start' => '107931800',
'end' => '107932254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23AP50-001'
),
'ENST00000431564' => array(
'start' => '108252214',
'end' => '108252400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.5-001'
),
'ENST00000418637' => array(
'start' => '108318079',
'end' => '108318404',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.6-001'
),
'ENST00000442911' => array(
'start' => '108372772',
'end' => '108372927',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-72I2.1-001'
),
'ENST00000459408' => array(
'start' => '107930088',
'end' => '107930182',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-437P-201'
),
'ENST00000364811' => array(
'start' => '108060818',
'end' => '108060930',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-837'
),
'ENST00000517281' => array(
'start' => '107985659',
'end' => '107985773',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA73.1-204'
),
'ENST00000607298' => array(
'start' => '108030249',
'end' => '108030718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-111B22.3-001'
),
'ENST00000606070' => array(
'start' => '107957413',
'end' => '107959986',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-191J18.66-001'
),
'ENST00000624856' => array(
'start' => '108178871',
'end' => '108179317',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP3-429G5.5-001'
),
'ENST00000624715' => array(
'start' => '108359084',
'end' => '108359863',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-72I2.2-001'
),
'ENST00000623300' => array(
'start' => '107697299',
'end' => '107700218',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP1-47M23.3-001'
),
'ENSMUST00000019937' => array(
'start' => '42761496',
'end' => '42832514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sec63-001'
),
'ENSMUST00000105496' => array(
'start' => '42817928',
'end' => '42829283',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-005'
),
'ENSMUST00000124613' => array(
'start' => '42817928',
'end' => '42829280',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-004'
),
'ENSMUST00000144228' => array(
'start' => '42761806',
'end' => '42812742',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-003'
),
'ENSMUST00000155410' => array(
'start' => '42761615',
'end' => '42830392',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-002'
),
'ENSMUST00000019938' => array(
'start' => '42561963',
'end' => '42583632',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-001'
),
'ENSMUST00000105498' => array(
'start' => '42563272',
'end' => '42568828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-002'
),
'ENSMUST00000126848' => array(
'start' => '42571484',
'end' => '42580345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-003'
),
'ENSMUST00000143891' => array(
'start' => '42572858',
'end' => '42580774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-004'
),
'ENSMUST00000019939' => array(
'start' => '42502031',
'end' => '42535370',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-001'
),
'ENSMUST00000105499' => array(
'start' => '42502290',
'end' => '42535381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-003'
),
'ENSMUST00000105500' => array(
'start' => '42502030',
'end' => '42534787',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-002'
),
'ENSMUST00000040275' => array(
'start' => '43002500',
'end' => '43174530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-001'
),
'ENSMUST00000189987' => array(
'start' => '43172974',
'end' => '43174521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-002'
),
'ENSMUST00000040718' => array(
'start' => '42678916',
'end' => '42702459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-004'
),
'ENSMUST00000105497' => array(
'start' => '42583835',
'end' => '42698323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-003'
),
'ENSMUST00000144806' => array(
'start' => '42583838',
'end' => '42700492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-002'
),
'ENSMUST00000147899' => array(
'start' => '42583822',
'end' => '42584731',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ostm1-001'
),
'ENSMUST00000154048' => array(
'start' => '42678966',
'end' => '42699991',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ostm1-005'
),
'ENSMUST00000041024' => array(
'start' => '42312585',
'end' => '42478565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-001'
),
'ENSMUST00000133326' => array(
'start' => '42312588',
'end' => '42478415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-003'
),
'ENSMUST00000149832' => array(
'start' => '42313582',
'end' => '42425308',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-004'
),
'ENSMUST00000151747' => array(
'start' => '42312585',
'end' => '42478280',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-002'
),
'ENSMUST00000063063' => array(
'start' => '42860370',
'end' => '42960780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-002'
),
'ENSMUST00000105494' => array(
'start' => '42860793',
'end' => '42960778',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-003'
),
'ENSMUST00000105495' => array(
'start' => '42860667',
'end' => '42934361',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-001'
),
'ENSMUST00000125576' => array(
'start' => '42902473',
'end' => '42935139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-008'
),
'ENSMUST00000127675' => array(
'start' => '42939881',
'end' => '42958721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Scml4-006'
),
'ENSMUST00000130511' => array(
'start' => '42934338',
'end' => '42958770',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-004'
),
'ENSMUST00000136841' => array(
'start' => '42865514',
'end' => '42930419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-007'
),
'ENSMUST00000153091' => array(
'start' => '42934916',
'end' => '42948199',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-005'
),
'ENSMUST00000157071' => array(
'start' => '42860543',
'end' => '42930554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-009'
),
'ENSMUST00000117283' => array(
'start' => '42435880',
'end' => '42436065',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15198-001'
),
'ENSMUST00000129933' => array(
'start' => '42740539',
'end' => '42758660',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15199-001'
),
'ENSMUST00000149950' => array(
'start' => '42698036',
'end' => '42698518',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15200-001'
),
'ENSMUST00000157094' => array(
'start' => '42820463',
'end' => '42820767',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26464-201'
),
'ENSMUST00000157266' => array(
'start' => '42493423',
'end' => '42493746',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm25277-201'
),
'ENSMUST00000181674' => array(
'start' => '42761596',
'end' => '42763635',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26860-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
'ENSG00000025796' => array(
[maximum depth reached]
),
'ENSG00000081087' => array(
[maximum depth reached]
),
'ENSG00000112320' => array(
[maximum depth reached]
),
'ENSG00000112333' => array(
[maximum depth reached]
),
'ENSG00000112335' => array(
[maximum depth reached]
),
'ENSG00000135537' => array(
[maximum depth reached]
),
'ENSG00000146285' => array(
[maximum depth reached]
),
'ENSG00000212525' => array(
[maximum depth reached]
),
'ENSG00000224987' => array(
[maximum depth reached]
),
'ENSG00000225093' => array(
[maximum depth reached]
),
'ENSG00000225174' => array(
[maximum depth reached]
),
'ENSG00000227072' => array(
[maximum depth reached]
),
'ENSG00000230248' => array(
[maximum depth reached]
),
'ENSG00000232778' => array(
[maximum depth reached]
),
'ENSG00000233511' => array(
[maximum depth reached]
),
'ENSG00000238055' => array(
[maximum depth reached]
),
'ENSG00000238079' => array(
[maximum depth reached]
),
'ENSG00000238420' => array(
[maximum depth reached]
),
'ENSG00000238490' => array(
[maximum depth reached]
),
'ENSG00000271734' => array(
[maximum depth reached]
),
'ENSG00000279398' => array(
[maximum depth reached]
),
'ENSG00000279498' => array(
[maximum depth reached]
),
'ENSG00000280135' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Bladder',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Brain',
(int) 90 => 'Ovary',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Kidney',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Adipose',
(int) 115 => 'Colon',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Brain',
(int) 121 => 'Breast',
(int) 122 => 'Colon',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Lung',
(int) 127 => 'Muscle',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Muscle',
(int) 140 => 'Ovary',
(int) 141 => 'Placenta',
(int) 142 => 'Testis',
(int) 143 => 'Adrenal',
(int) 144 => 'Bladder',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Muscle',
(int) 154 => 'Ovary',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Testis',
(int) 167 => 'Adipose',
(int) 168 => 'Heart',
(int) 169 => 'Adrenal',
(int) 170 => 'Bladder',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Muscle',
(int) 174 => 'Kidney',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Brain',
(int) 179 => 'Breast',
(int) 180 => 'Colon',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Liver',
(int) 184 => 'Lung',
(int) 185 => 'Ovary',
(int) 186 => 'Placenta',
(int) 187 => 'Bladder',
(int) 188 => 'Breast',
(int) 189 => 'Lung',
(int) 190 => 'Ovary',
(int) 191 => 'Placenta',
(int) 192 => 'Testis',
(int) 193 => 'Placenta',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Kidney',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Testis',
(int) 201 => 'Adipose',
(int) 202 => 'Brain',
(int) 203 => 'Breast',
(int) 204 => 'Colon',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Testis',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Adrenal',
(int) 216 => 'Colon',
(int) 217 => 'Adrenal',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Kidney',
(int) 221 => 'Testis',
(int) 222 => 'Adipose',
(int) 223 => 'Adrenal',
(int) 224 => 'Brain',
(int) 225 => 'Breast',
(int) 226 => 'Colon',
(int) 227 => 'Heart',
(int) 228 => 'Kidney',
(int) 229 => 'Liver',
(int) 230 => 'Lung',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Placenta',
(int) 234 => 'Testis',
(int) 235 => 'Brain',
(int) 236 => 'Testis',
(int) 237 => 'Kidney',
(int) 238 => 'Liver',
(int) 239 => 'Ovary',
(int) 240 => 'Testis',
(int) 241 => 'Adrenal',
(int) 242 => 'Brain',
(int) 243 => 'Breast',
(int) 244 => 'Liver',
(int) 245 => 'Lung',
(int) 246 => 'Ovary',
(int) 247 => 'Testis',
(int) 248 => 'Bladder',
(int) 249 => 'Breast',
(int) 250 => 'Heart',
(int) 251 => 'Kidney',
(int) 252 => 'Liver',
(int) 253 => 'Ovary',
(int) 254 => 'Testis',
(int) 255 => 'Adrenal',
(int) 256 => 'Heart',
(int) 257 => 'Muscle',
(int) 258 => 'Adrenal',
(int) 259 => 'Brain',
(int) 260 => 'Breast',
(int) 261 => 'Colon',
(int) 262 => 'Heart',
(int) 263 => 'Liver',
(int) 264 => 'Lung',
(int) 265 => 'Ovary',
(int) 266 => 'Placenta',
(int) 267 => 'Testis',
(int) 268 => 'Brain',
(int) 269 => 'Testis',
(int) 270 => 'Brain',
(int) 271 => 'Kidney',
(int) 272 => 'Ovary',
(int) 273 => 'Testis',
(int) 274 => 'Adipose',
(int) 275 => 'Adrenal',
(int) 276 => 'Brain',
(int) 277 => 'Colon',
(int) 278 => 'Kidney',
(int) 279 => 'Muscle',
(int) 280 => 'Ovary',
(int) 281 => 'Placenta',
(int) 282 => 'Testis',
(int) 283 => 'Brain',
(int) 284 => 'Ovary',
(int) 285 => 'Adrenal',
(int) 286 => 'Breast',
(int) 287 => 'Heart',
(int) 288 => 'Liver',
(int) 289 => 'Ovary',
(int) 290 => 'Adrenal',
(int) 291 => 'Brain',
(int) 292 => 'Breast',
(int) 293 => 'Colon',
(int) 294 => 'Kidney',
(int) 295 => 'Liver',
(int) 296 => 'Lung',
(int) 297 => 'Ovary',
(int) 298 => 'Placenta',
(int) 299 => 'Testis'
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000019802' => array(
[maximum depth reached]
),
'ENSMUSG00000019803' => array(
[maximum depth reached]
),
'ENSMUSG00000019804' => array(
[maximum depth reached]
),
'ENSMUSG00000038248' => array(
[maximum depth reached]
),
'ENSMUSG00000038280' => array(
[maximum depth reached]
),
'ENSMUSG00000038302' => array(
[maximum depth reached]
),
'ENSMUSG00000044770' => array(
[maximum depth reached]
),
'ENSMUSG00000083429' => array(
[maximum depth reached]
),
'ENSMUSG00000086428' => array(
[maximum depth reached]
),
'ENSMUSG00000087719' => array(
[maximum depth reached]
),
'ENSMUSG00000087891' => array(
[maximum depth reached]
),
'ENSMUSG00000097008' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Testis',
(int) 20 => 'Adrenal',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Liver',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Ovary',
(int) 29 => 'Testis',
(int) 30 => 'Liver',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Colon',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Brain',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Bladder',
(int) 116 => 'Brain',
(int) 117 => 'Breast',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Adipose',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Kidney',
(int) 134 => 'Liver',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Brain',
(int) 141 => 'Breast',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Liver',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Kidney',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Adrenal',
(int) 154 => 'Breast',
(int) 155 => 'Kidney',
(int) 156 => 'Liver',
(int) 157 => 'Lung',
(int) 158 => 'Adipose',
(int) 159 => 'Colon',
(int) 160 => 'Kidney',
(int) 161 => 'Liver',
(int) 162 => 'Ovary',
(int) 163 => 'Placenta',
(int) 164 => 'Testis',
(int) 165 => 'Adipose',
(int) 166 => 'Adrenal',
(int) 167 => 'Bladder',
(int) 168 => 'Breast',
(int) 169 => 'Heart',
(int) 170 => 'Kidney',
(int) 171 => 'Liver',
(int) 172 => 'Lung',
(int) 173 => 'Muscle',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Kidney',
(int) 177 => 'Liver',
(int) 178 => 'Lung',
(int) 179 => 'Muscle',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Adipose',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Kidney',
(int) 186 => 'Liver',
(int) 187 => 'Ovary',
(int) 188 => 'Placenta',
(int) 189 => 'Adipose',
(int) 190 => 'Brain',
(int) 191 => 'Breast',
(int) 192 => 'Colon',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Ovary',
(int) 196 => 'Placenta',
(int) 197 => 'Testis',
(int) 198 => 'Adipose',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Ovary',
(int) 209 => 'Placenta',
(int) 210 => 'Testis',
(int) 211 => 'Placenta',
(int) 212 => 'Ovary'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0002',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '108443378',
'seq_end' => '108477256',
'region_length' => '33878',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
)
$gene_el = array(
'ENST00000623300' => array(
'Adrenal' => array(
'average_FPKM' => '1.721',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.07'
),
'Colon' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.308',
'stddev_FPKM' => '0.13'
),
'Ovary' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.02'
),
'Placenta' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.06'
)
)
)
$gene_key = 'ENSG00000280135'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '1.721',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.07'
),
'Colon' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.308',
'stddev_FPKM' => '0.13'
),
'Ovary' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.02'
),
'Placenta' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.06'
)
)
$tran_key = 'ENST00000623300'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000025796' => 'SEC63 homolog (S. cerevisiae)',
'ENSG00000081087' => 'osteopetrosis associated transmembrane protein 1',
'ENSG00000112320' => 'sine oculis binding protein homolog (Drosophila)',
'ENSG00000112333' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSG00000112335' => 'sorting nexin 3',
'ENSG00000135537' => 'lactation elevated 1',
'ENSG00000146285' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSG00000200799' => 'RNA, U6 small nuclear 770, pseudogene',
'ENSG00000206974' => 'RNA, U6 small nuclear 1144, pseudogene',
'ENSG00000212525' => 'RNA, 5S ribosomal pseudogene 212',
'ENSG00000224987' => null,
'ENSG00000225093' => 'ribosomal protein L3 pseudogene 7',
'ENSG00000225174' => 'OSTM1 antisense RNA 1',
'ENSG00000227072' => null,
'ENSG00000230248' => null,
'ENSG00000231112' => 'methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 3',
'ENSG00000232778' => 'ribosomal protein L23a pseudogene 50',
'ENSG00000233511' => null,
'ENSG00000238055' => null,
'ENSG00000238079' => null,
'ENSG00000238420' => 'RNA, U6 small nuclear 437, pseudogene',
'ENSG00000238490' => 'Y RNA',
'ENSG00000253090' => 'Small nucleolar RNA SNORA73 family',
'ENSG00000271734' => null,
'ENSG00000272476' => null,
'ENSG00000279398' => null,
'ENSG00000279498' => null,
'ENSG00000280135' => null,
'ENSMUSG00000019802' => 'SEC63-like (S. cerevisiae)',
'ENSMUSG00000019803' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSMUSG00000019804' => 'sorting nexin 3',
'ENSMUSG00000038248' => 'sine oculis-binding protein homolog (Drosophila)',
'ENSMUSG00000038280' => 'osteopetrosis associated transmembrane protein 1',
'ENSMUSG00000038302' => 'lactation elevated 1',
'ENSMUSG00000044770' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSMUSG00000083429' => 'predicted gene 15198',
'ENSMUSG00000086428' => 'predicted gene 15199',
'ENSMUSG00000086434' => 'predicted gene 15200',
'ENSMUSG00000087719' => 'predicted gene, 26464',
'ENSMUSG00000087891' => 'predicted gene, 25277',
'ENSMUSG00000097008' => 'predicted gene, 26860'
),
'gene_name_arr' => array(
'ENSG00000025796' => 'SEC63',
'ENSG00000081087' => 'OSTM1',
'ENSG00000112320' => 'SOBP',
'ENSG00000112333' => 'NR2E1',
'ENSG00000112335' => 'SNX3',
'ENSG00000135537' => 'LACE1',
'ENSG00000146285' => 'SCML4',
'ENSG00000200799' => 'RNU6-770P',
'ENSG00000206974' => 'RNU6-1144P',
'ENSG00000212525' => 'RNA5SP212',
'ENSG00000224987' => 'RP1-191J18.65',
'ENSG00000225093' => 'RPL3P7',
'ENSG00000225174' => 'OSTM1-AS1',
'ENSG00000227072' => 'RP3-466I7.1',
'ENSG00000230248' => 'RP1-128O3.4',
'ENSG00000231112' => 'MTHFD2P3',
'ENSG00000232778' => 'RPL23AP50',
'ENSG00000233511' => 'RP1-128O3.5',
'ENSG00000238055' => 'RP1-128O3.6',
'ENSG00000238079' => 'RP11-72I2.1',
'ENSG00000238420' => 'RNU6-437P',
'ENSG00000238490' => 'Y_RNA',
'ENSG00000253090' => 'SNORA73',
'ENSG00000271734' => 'RP1-111B22.3',
'ENSG00000272476' => 'RP1-191J18.66',
'ENSG00000279398' => 'RP3-429G5.5',
'ENSG00000279498' => 'RP11-72I2.2',
'ENSG00000280135' => 'RP1-47M23.3',
'ENSMUSG00000019802' => 'Sec63',
'ENSMUSG00000019803' => 'Nr2e1',
'ENSMUSG00000019804' => 'Snx3',
'ENSMUSG00000038248' => 'Sobp',
'ENSMUSG00000038280' => 'Ostm1',
'ENSMUSG00000038302' => 'Lace1',
'ENSMUSG00000044770' => 'Scml4',
'ENSMUSG00000083429' => 'Gm15198',
'ENSMUSG00000086428' => 'Gm15199',
'ENSMUSG00000086434' => 'Gm15200',
'ENSMUSG00000087719' => 'Gm26464',
'ENSMUSG00000087891' => 'Gm25277',
'ENSMUSG00000097008' => 'Gm26860'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 87 => 'Brain',
(int) 126 => 'Breast',
(int) 168 => 'Colon',
(int) 203 => 'Heart',
(int) 233 => 'Kidney',
(int) 272 => 'Liver',
(int) 313 => 'Lung',
(int) 347 => 'Muscle',
(int) 372 => 'Ovary',
(int) 423 => 'Placenta',
(int) 466 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 107,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000369002' => array(
'start' => '107867756',
'end' => '107958189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-001'
),
'ENST00000429168' => array(
'start' => '107909008',
'end' => '107957340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-007'
),
'ENST00000446496' => array(
'start' => '107924818',
'end' => '107958111',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SEC63-010'
),
'ENST00000459782' => array(
'start' => '107870765',
'end' => '107877400',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-004'
),
'ENST00000460009' => array(
'start' => '107954584',
'end' => '107958042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SEC63-002'
),
'ENST00000465210' => array(
'start' => '107880960',
'end' => '107883112',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-009'
),
'ENST00000466419' => array(
'start' => '107893580',
'end' => '107902900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-003'
),
'ENST00000473746' => array(
'start' => '107872885',
'end' => '107883467',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-008'
),
'ENST00000484803' => array(
'start' => '107911168',
'end' => '107957931',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-005'
),
'ENST00000489455' => array(
'start' => '107906465',
'end' => '107909159',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-006'
),
'ENST00000193322' => array(
'start' => '108041409',
'end' => '108074737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-001'
),
'ENST00000440575' => array(
'start' => '108044831',
'end' => '108165840',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-006'
),
'ENST00000467960' => array(
'start' => '108064185',
'end' => '108074741',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-002'
),
'ENST00000472669' => array(
'start' => '108044379',
'end' => '108051066',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-005'
),
'ENST00000477774' => array(
'start' => '108044733',
'end' => '108049668',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-004'
),
'ENST00000492070' => array(
'start' => '108122336',
'end' => '108165854',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-007'
),
'ENST00000492130' => array(
'start' => '108041472',
'end' => '108044238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-003'
),
'ENST00000317357' => array(
'start' => '107489958',
'end' => '107660167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-001'
),
'ENST00000477448' => array(
'start' => '107490106',
'end' => '107558287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOBP-002'
),
'ENST00000494935' => array(
'start' => '107634990',
'end' => '107636316',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOBP-003'
),
'ENST00000618129' => array(
'start' => '107490604',
'end' => '107515073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-201'
),
'ENST00000368983' => array(
'start' => '108168023',
'end' => '108188802',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-002'
),
'ENST00000368986' => array(
'start' => '108166058',
'end' => '108188809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-001'
),
'ENST00000426403' => array(
'start' => '108168763',
'end' => '108176626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-003'
),
'ENST00000484978' => array(
'start' => '108176104',
'end' => '108178147',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NR2E1-004'
),
'ENST00000230085' => array(
'start' => '108211222',
'end' => '108261260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-001'
),
'ENST00000349379' => array(
'start' => '108212005',
'end' => '108261244',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-003'
),
'ENST00000368979' => array(
'start' => '108211513',
'end' => '108261246',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX3-002'
),
'ENST00000426155' => array(
'start' => '108211513',
'end' => '108260964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-004'
),
'ENST00000368977' => array(
'start' => '108294894',
'end' => '108526001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-001'
),
'ENST00000421954' => array(
'start' => '108295201',
'end' => '108523117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-006'
),
'ENST00000430458' => array(
'start' => '108294991',
'end' => '108346990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-004'
),
'ENST00000431865' => array(
'start' => '108356690',
'end' => '108522334',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LACE1-002'
),
'ENST00000437715' => array(
'start' => '108295753',
'end' => '108356751',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-007'
),
'ENST00000481842' => array(
'start' => '108523137',
'end' => '108526796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-005'
),
'ENST00000486863' => array(
'start' => '108476979',
'end' => '108522465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LACE1-003'
),
'ENST00000369020' => array(
'start' => '107705200',
'end' => '107824312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-005'
),
'ENST00000369021' => array(
'start' => '107718954',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-201'
),
'ENST00000369022' => array(
'start' => '107704104',
'end' => '107824317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-008'
),
'ENST00000369025' => array(
'start' => '107704651',
'end' => '107732395',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-002'
),
'ENST00000426221' => array(
'start' => '107740065',
'end' => '107824286',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SCML4-006'
),
'ENST00000440927' => array(
'start' => '107744949',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-007'
),
'ENST00000459992' => array(
'start' => '107719730',
'end' => '107772251',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-009'
),
'ENST00000463507' => array(
'start' => '107720671',
'end' => '107824294',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-004'
),
'ENST00000473515' => array(
'start' => '107718955',
'end' => '107824312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-001'
),
'ENST00000476798' => array(
'start' => '107718445',
'end' => '107732103',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-010'
),
'ENST00000479803' => array(
'start' => '107720709',
'end' => '107744054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SCML4-003'
),
'ENST00000363929' => array(
'start' => '108392073',
'end' => '108392177',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-770P-201'
),
'ENST00000384247' => array(
'start' => '108292766',
'end' => '108292869',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1144P-201'
),
'ENST00000391223' => array(
'start' => '108252401',
'end' => '108252507',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP212-201'
),
'ENST00000412741' => array(
'start' => '107985089',
'end' => '107985690',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-191J18.65-001'
),
'ENST00000417878' => array(
'start' => '108004357',
'end' => '108005568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL3P7-001'
),
'ENST00000426008' => array(
'start' => '108123515',
'end' => '108156698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-002'
),
'ENST00000441184' => array(
'start' => '108123633',
'end' => '108159392',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-001'
),
'ENST00000436728' => array(
'start' => '108387512',
'end' => '108388080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-466I7.1-001'
),
'ENST00000419801' => array(
'start' => '108275642',
'end' => '108276546',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-128O3.4-001'
),
'ENST00000423135' => array(
'start' => '107985811',
'end' => '107986031',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTHFD2P3-001'
),
'ENST00000434149' => array(
'start' => '107931800',
'end' => '107932254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23AP50-001'
),
'ENST00000431564' => array(
'start' => '108252214',
'end' => '108252400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.5-001'
),
'ENST00000418637' => array(
'start' => '108318079',
'end' => '108318404',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.6-001'
),
'ENST00000442911' => array(
'start' => '108372772',
'end' => '108372927',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-72I2.1-001'
),
'ENST00000459408' => array(
'start' => '107930088',
'end' => '107930182',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-437P-201'
),
'ENST00000364811' => array(
'start' => '108060818',
'end' => '108060930',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-837'
),
'ENST00000517281' => array(
'start' => '107985659',
'end' => '107985773',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA73.1-204'
),
'ENST00000607298' => array(
'start' => '108030249',
'end' => '108030718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-111B22.3-001'
),
'ENST00000606070' => array(
'start' => '107957413',
'end' => '107959986',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-191J18.66-001'
),
'ENST00000624856' => array(
'start' => '108178871',
'end' => '108179317',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP3-429G5.5-001'
),
'ENST00000624715' => array(
'start' => '108359084',
'end' => '108359863',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-72I2.2-001'
),
'ENST00000623300' => array(
'start' => '107697299',
'end' => '107700218',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP1-47M23.3-001'
),
'ENSMUST00000019937' => array(
'start' => '42761496',
'end' => '42832514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sec63-001'
),
'ENSMUST00000105496' => array(
'start' => '42817928',
'end' => '42829283',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-005'
),
'ENSMUST00000124613' => array(
'start' => '42817928',
'end' => '42829280',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-004'
),
'ENSMUST00000144228' => array(
'start' => '42761806',
'end' => '42812742',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-003'
),
'ENSMUST00000155410' => array(
'start' => '42761615',
'end' => '42830392',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-002'
),
'ENSMUST00000019938' => array(
'start' => '42561963',
'end' => '42583632',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-001'
),
'ENSMUST00000105498' => array(
'start' => '42563272',
'end' => '42568828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-002'
),
'ENSMUST00000126848' => array(
'start' => '42571484',
'end' => '42580345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-003'
),
'ENSMUST00000143891' => array(
'start' => '42572858',
'end' => '42580774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-004'
),
'ENSMUST00000019939' => array(
'start' => '42502031',
'end' => '42535370',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-001'
),
'ENSMUST00000105499' => array(
'start' => '42502290',
'end' => '42535381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-003'
),
'ENSMUST00000105500' => array(
'start' => '42502030',
'end' => '42534787',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-002'
),
'ENSMUST00000040275' => array(
'start' => '43002500',
'end' => '43174530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-001'
),
'ENSMUST00000189987' => array(
'start' => '43172974',
'end' => '43174521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-002'
),
'ENSMUST00000040718' => array(
'start' => '42678916',
'end' => '42702459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-004'
),
'ENSMUST00000105497' => array(
'start' => '42583835',
'end' => '42698323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-003'
),
'ENSMUST00000144806' => array(
'start' => '42583838',
'end' => '42700492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-002'
),
'ENSMUST00000147899' => array(
'start' => '42583822',
'end' => '42584731',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ostm1-001'
),
'ENSMUST00000154048' => array(
'start' => '42678966',
'end' => '42699991',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ostm1-005'
),
'ENSMUST00000041024' => array(
'start' => '42312585',
'end' => '42478565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-001'
),
'ENSMUST00000133326' => array(
'start' => '42312588',
'end' => '42478415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-003'
),
'ENSMUST00000149832' => array(
'start' => '42313582',
'end' => '42425308',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-004'
),
'ENSMUST00000151747' => array(
'start' => '42312585',
'end' => '42478280',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-002'
),
'ENSMUST00000063063' => array(
'start' => '42860370',
'end' => '42960780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-002'
),
'ENSMUST00000105494' => array(
'start' => '42860793',
'end' => '42960778',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-003'
),
'ENSMUST00000105495' => array(
'start' => '42860667',
'end' => '42934361',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-001'
),
'ENSMUST00000125576' => array(
'start' => '42902473',
'end' => '42935139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-008'
),
'ENSMUST00000127675' => array(
'start' => '42939881',
'end' => '42958721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Scml4-006'
),
'ENSMUST00000130511' => array(
'start' => '42934338',
'end' => '42958770',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-004'
),
'ENSMUST00000136841' => array(
'start' => '42865514',
'end' => '42930419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-007'
),
'ENSMUST00000153091' => array(
'start' => '42934916',
'end' => '42948199',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-005'
),
'ENSMUST00000157071' => array(
'start' => '42860543',
'end' => '42930554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-009'
),
'ENSMUST00000117283' => array(
'start' => '42435880',
'end' => '42436065',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15198-001'
),
'ENSMUST00000129933' => array(
'start' => '42740539',
'end' => '42758660',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15199-001'
),
'ENSMUST00000149950' => array(
'start' => '42698036',
'end' => '42698518',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15200-001'
),
'ENSMUST00000157094' => array(
'start' => '42820463',
'end' => '42820767',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26464-201'
),
'ENSMUST00000157266' => array(
'start' => '42493423',
'end' => '42493746',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm25277-201'
),
'ENSMUST00000181674' => array(
'start' => '42761596',
'end' => '42763635',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26860-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
'ENSG00000025796' => array(
[maximum depth reached]
),
'ENSG00000081087' => array(
[maximum depth reached]
),
'ENSG00000112320' => array(
[maximum depth reached]
),
'ENSG00000112333' => array(
[maximum depth reached]
),
'ENSG00000112335' => array(
[maximum depth reached]
),
'ENSG00000135537' => array(
[maximum depth reached]
),
'ENSG00000146285' => array(
[maximum depth reached]
),
'ENSG00000212525' => array(
[maximum depth reached]
),
'ENSG00000224987' => array(
[maximum depth reached]
),
'ENSG00000225093' => array(
[maximum depth reached]
),
'ENSG00000225174' => array(
[maximum depth reached]
),
'ENSG00000227072' => array(
[maximum depth reached]
),
'ENSG00000230248' => array(
[maximum depth reached]
),
'ENSG00000232778' => array(
[maximum depth reached]
),
'ENSG00000233511' => array(
[maximum depth reached]
),
'ENSG00000238055' => array(
[maximum depth reached]
),
'ENSG00000238079' => array(
[maximum depth reached]
),
'ENSG00000238420' => array(
[maximum depth reached]
),
'ENSG00000238490' => array(
[maximum depth reached]
),
'ENSG00000271734' => array(
[maximum depth reached]
),
'ENSG00000279398' => array(
[maximum depth reached]
),
'ENSG00000279498' => array(
[maximum depth reached]
),
'ENSG00000280135' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Bladder',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Brain',
(int) 90 => 'Ovary',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Kidney',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Adipose',
(int) 115 => 'Colon',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Brain',
(int) 121 => 'Breast',
(int) 122 => 'Colon',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Lung',
(int) 127 => 'Muscle',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Muscle',
(int) 140 => 'Ovary',
(int) 141 => 'Placenta',
(int) 142 => 'Testis',
(int) 143 => 'Adrenal',
(int) 144 => 'Bladder',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Muscle',
(int) 154 => 'Ovary',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Testis',
(int) 167 => 'Adipose',
(int) 168 => 'Heart',
(int) 169 => 'Adrenal',
(int) 170 => 'Bladder',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Muscle',
(int) 174 => 'Kidney',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Brain',
(int) 179 => 'Breast',
(int) 180 => 'Colon',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Liver',
(int) 184 => 'Lung',
(int) 185 => 'Ovary',
(int) 186 => 'Placenta',
(int) 187 => 'Bladder',
(int) 188 => 'Breast',
(int) 189 => 'Lung',
(int) 190 => 'Ovary',
(int) 191 => 'Placenta',
(int) 192 => 'Testis',
(int) 193 => 'Placenta',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Kidney',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Testis',
(int) 201 => 'Adipose',
(int) 202 => 'Brain',
(int) 203 => 'Breast',
(int) 204 => 'Colon',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Testis',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Adrenal',
(int) 216 => 'Colon',
(int) 217 => 'Adrenal',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Kidney',
(int) 221 => 'Testis',
(int) 222 => 'Adipose',
(int) 223 => 'Adrenal',
(int) 224 => 'Brain',
(int) 225 => 'Breast',
(int) 226 => 'Colon',
(int) 227 => 'Heart',
(int) 228 => 'Kidney',
(int) 229 => 'Liver',
(int) 230 => 'Lung',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Placenta',
(int) 234 => 'Testis',
(int) 235 => 'Brain',
(int) 236 => 'Testis',
(int) 237 => 'Kidney',
(int) 238 => 'Liver',
(int) 239 => 'Ovary',
(int) 240 => 'Testis',
(int) 241 => 'Adrenal',
(int) 242 => 'Brain',
(int) 243 => 'Breast',
(int) 244 => 'Liver',
(int) 245 => 'Lung',
(int) 246 => 'Ovary',
(int) 247 => 'Testis',
(int) 248 => 'Bladder',
(int) 249 => 'Breast',
(int) 250 => 'Heart',
(int) 251 => 'Kidney',
(int) 252 => 'Liver',
(int) 253 => 'Ovary',
(int) 254 => 'Testis',
(int) 255 => 'Adrenal',
(int) 256 => 'Heart',
(int) 257 => 'Muscle',
(int) 258 => 'Adrenal',
(int) 259 => 'Brain',
(int) 260 => 'Breast',
(int) 261 => 'Colon',
(int) 262 => 'Heart',
(int) 263 => 'Liver',
(int) 264 => 'Lung',
(int) 265 => 'Ovary',
(int) 266 => 'Placenta',
(int) 267 => 'Testis',
(int) 268 => 'Brain',
(int) 269 => 'Testis',
(int) 270 => 'Brain',
(int) 271 => 'Kidney',
(int) 272 => 'Ovary',
(int) 273 => 'Testis',
(int) 274 => 'Adipose',
(int) 275 => 'Adrenal',
(int) 276 => 'Brain',
(int) 277 => 'Colon',
(int) 278 => 'Kidney',
(int) 279 => 'Muscle',
(int) 280 => 'Ovary',
(int) 281 => 'Placenta',
(int) 282 => 'Testis',
(int) 283 => 'Brain',
(int) 284 => 'Ovary',
(int) 285 => 'Adrenal',
(int) 286 => 'Breast',
(int) 287 => 'Heart',
(int) 288 => 'Liver',
(int) 289 => 'Ovary',
(int) 290 => 'Adrenal',
(int) 291 => 'Brain',
(int) 292 => 'Breast',
(int) 293 => 'Colon',
(int) 294 => 'Kidney',
(int) 295 => 'Liver',
(int) 296 => 'Lung',
(int) 297 => 'Ovary',
(int) 298 => 'Placenta',
(int) 299 => 'Testis'
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000019802' => array(
[maximum depth reached]
),
'ENSMUSG00000019803' => array(
[maximum depth reached]
),
'ENSMUSG00000019804' => array(
[maximum depth reached]
),
'ENSMUSG00000038248' => array(
[maximum depth reached]
),
'ENSMUSG00000038280' => array(
[maximum depth reached]
),
'ENSMUSG00000038302' => array(
[maximum depth reached]
),
'ENSMUSG00000044770' => array(
[maximum depth reached]
),
'ENSMUSG00000083429' => array(
[maximum depth reached]
),
'ENSMUSG00000086428' => array(
[maximum depth reached]
),
'ENSMUSG00000087719' => array(
[maximum depth reached]
),
'ENSMUSG00000087891' => array(
[maximum depth reached]
),
'ENSMUSG00000097008' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Testis',
(int) 20 => 'Adrenal',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Liver',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Ovary',
(int) 29 => 'Testis',
(int) 30 => 'Liver',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Colon',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Brain',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Bladder',
(int) 116 => 'Brain',
(int) 117 => 'Breast',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Adipose',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Kidney',
(int) 134 => 'Liver',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Brain',
(int) 141 => 'Breast',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Liver',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Kidney',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Adrenal',
(int) 154 => 'Breast',
(int) 155 => 'Kidney',
(int) 156 => 'Liver',
(int) 157 => 'Lung',
(int) 158 => 'Adipose',
(int) 159 => 'Colon',
(int) 160 => 'Kidney',
(int) 161 => 'Liver',
(int) 162 => 'Ovary',
(int) 163 => 'Placenta',
(int) 164 => 'Testis',
(int) 165 => 'Adipose',
(int) 166 => 'Adrenal',
(int) 167 => 'Bladder',
(int) 168 => 'Breast',
(int) 169 => 'Heart',
(int) 170 => 'Kidney',
(int) 171 => 'Liver',
(int) 172 => 'Lung',
(int) 173 => 'Muscle',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Kidney',
(int) 177 => 'Liver',
(int) 178 => 'Lung',
(int) 179 => 'Muscle',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Adipose',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Kidney',
(int) 186 => 'Liver',
(int) 187 => 'Ovary',
(int) 188 => 'Placenta',
(int) 189 => 'Adipose',
(int) 190 => 'Brain',
(int) 191 => 'Breast',
(int) 192 => 'Colon',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Ovary',
(int) 196 => 'Placenta',
(int) 197 => 'Testis',
(int) 198 => 'Adipose',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Ovary',
(int) 209 => 'Placenta',
(int) 210 => 'Testis',
(int) 211 => 'Placenta',
(int) 212 => 'Ovary'
)
)
)
$gene_desc_arr = array(
'ENSG00000025796' => 'SEC63 homolog (S. cerevisiae)',
'ENSG00000081087' => 'osteopetrosis associated transmembrane protein 1',
'ENSG00000112320' => 'sine oculis binding protein homolog (Drosophila)',
'ENSG00000112333' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSG00000112335' => 'sorting nexin 3',
'ENSG00000135537' => 'lactation elevated 1',
'ENSG00000146285' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSG00000200799' => 'RNA, U6 small nuclear 770, pseudogene',
'ENSG00000206974' => 'RNA, U6 small nuclear 1144, pseudogene',
'ENSG00000212525' => 'RNA, 5S ribosomal pseudogene 212',
'ENSG00000224987' => null,
'ENSG00000225093' => 'ribosomal protein L3 pseudogene 7',
'ENSG00000225174' => 'OSTM1 antisense RNA 1',
'ENSG00000227072' => null,
'ENSG00000230248' => null,
'ENSG00000231112' => 'methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 3',
'ENSG00000232778' => 'ribosomal protein L23a pseudogene 50',
'ENSG00000233511' => null,
'ENSG00000238055' => null,
'ENSG00000238079' => null,
'ENSG00000238420' => 'RNA, U6 small nuclear 437, pseudogene',
'ENSG00000238490' => 'Y RNA',
'ENSG00000253090' => 'Small nucleolar RNA SNORA73 family',
'ENSG00000271734' => null,
'ENSG00000272476' => null,
'ENSG00000279398' => null,
'ENSG00000279498' => null,
'ENSG00000280135' => null,
'ENSMUSG00000019802' => 'SEC63-like (S. cerevisiae)',
'ENSMUSG00000019803' => 'nuclear receptor subfamily 2, group E, member 1',
'ENSMUSG00000019804' => 'sorting nexin 3',
'ENSMUSG00000038248' => 'sine oculis-binding protein homolog (Drosophila)',
'ENSMUSG00000038280' => 'osteopetrosis associated transmembrane protein 1',
'ENSMUSG00000038302' => 'lactation elevated 1',
'ENSMUSG00000044770' => 'sex comb on midleg-like 4 (Drosophila)',
'ENSMUSG00000083429' => 'predicted gene 15198',
'ENSMUSG00000086428' => 'predicted gene 15199',
'ENSMUSG00000086434' => 'predicted gene 15200',
'ENSMUSG00000087719' => 'predicted gene, 26464',
'ENSMUSG00000087891' => 'predicted gene, 25277',
'ENSMUSG00000097008' => 'predicted gene, 26860'
)
$gene_name_arr = array(
'ENSG00000025796' => 'SEC63',
'ENSG00000081087' => 'OSTM1',
'ENSG00000112320' => 'SOBP',
'ENSG00000112333' => 'NR2E1',
'ENSG00000112335' => 'SNX3',
'ENSG00000135537' => 'LACE1',
'ENSG00000146285' => 'SCML4',
'ENSG00000200799' => 'RNU6-770P',
'ENSG00000206974' => 'RNU6-1144P',
'ENSG00000212525' => 'RNA5SP212',
'ENSG00000224987' => 'RP1-191J18.65',
'ENSG00000225093' => 'RPL3P7',
'ENSG00000225174' => 'OSTM1-AS1',
'ENSG00000227072' => 'RP3-466I7.1',
'ENSG00000230248' => 'RP1-128O3.4',
'ENSG00000231112' => 'MTHFD2P3',
'ENSG00000232778' => 'RPL23AP50',
'ENSG00000233511' => 'RP1-128O3.5',
'ENSG00000238055' => 'RP1-128O3.6',
'ENSG00000238079' => 'RP11-72I2.1',
'ENSG00000238420' => 'RNU6-437P',
'ENSG00000238490' => 'Y_RNA',
'ENSG00000253090' => 'SNORA73',
'ENSG00000271734' => 'RP1-111B22.3',
'ENSG00000272476' => 'RP1-191J18.66',
'ENSG00000279398' => 'RP3-429G5.5',
'ENSG00000279498' => 'RP11-72I2.2',
'ENSG00000280135' => 'RP1-47M23.3',
'ENSMUSG00000019802' => 'Sec63',
'ENSMUSG00000019803' => 'Nr2e1',
'ENSMUSG00000019804' => 'Snx3',
'ENSMUSG00000038248' => 'Sobp',
'ENSMUSG00000038280' => 'Ostm1',
'ENSMUSG00000038302' => 'Lace1',
'ENSMUSG00000044770' => 'Scml4',
'ENSMUSG00000083429' => 'Gm15198',
'ENSMUSG00000086428' => 'Gm15199',
'ENSMUSG00000086434' => 'Gm15200',
'ENSMUSG00000087719' => 'Gm26464',
'ENSMUSG00000087891' => 'Gm25277',
'ENSMUSG00000097008' => 'Gm26860'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0001',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '107632412',
'seq_end' => '108443377',
'region_length' => '810965',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0002',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '108443378',
'seq_end' => '108477256',
'region_length' => '33878',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0003',
'tax_id' => '10090',
'chromosome' => '10',
'seq_start' => '42339928',
'seq_end' => '43024116',
'region_length' => '684188',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0004',
'tax_id' => '7955',
'chromosome' => '20',
'seq_start' => '32511818',
'seq_end' => '32514594',
'region_length' => '2776',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 87 => 'Brain',
(int) 126 => 'Breast',
(int) 168 => 'Colon',
(int) 203 => 'Heart',
(int) 233 => 'Kidney',
(int) 272 => 'Liver',
(int) 313 => 'Lung',
(int) 347 => 'Muscle',
(int) 372 => 'Ovary',
(int) 423 => 'Placenta',
(int) 466 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 107
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000369002' => array(
'start' => '107867756',
'end' => '107958189',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-001'
),
'ENST00000429168' => array(
'start' => '107909008',
'end' => '107957340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SEC63-007'
),
'ENST00000446496' => array(
'start' => '107924818',
'end' => '107958111',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SEC63-010'
),
'ENST00000459782' => array(
'start' => '107870765',
'end' => '107877400',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-004'
),
'ENST00000460009' => array(
'start' => '107954584',
'end' => '107958042',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SEC63-002'
),
'ENST00000465210' => array(
'start' => '107880960',
'end' => '107883112',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-009'
),
'ENST00000466419' => array(
'start' => '107893580',
'end' => '107902900',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-003'
),
'ENST00000473746' => array(
'start' => '107872885',
'end' => '107883467',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-008'
),
'ENST00000484803' => array(
'start' => '107911168',
'end' => '107957931',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-005'
),
'ENST00000489455' => array(
'start' => '107906465',
'end' => '107909159',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SEC63-006'
),
'ENST00000193322' => array(
'start' => '108041409',
'end' => '108074737',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-001'
),
'ENST00000440575' => array(
'start' => '108044831',
'end' => '108165840',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OSTM1-006'
),
'ENST00000467960' => array(
'start' => '108064185',
'end' => '108074741',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-002'
),
'ENST00000472669' => array(
'start' => '108044379',
'end' => '108051066',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-005'
),
'ENST00000477774' => array(
'start' => '108044733',
'end' => '108049668',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-004'
),
'ENST00000492070' => array(
'start' => '108122336',
'end' => '108165854',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-007'
),
'ENST00000492130' => array(
'start' => '108041472',
'end' => '108044238',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OSTM1-003'
),
'ENST00000317357' => array(
'start' => '107489958',
'end' => '107660167',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-001'
),
'ENST00000477448' => array(
'start' => '107490106',
'end' => '107558287',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SOBP-002'
),
'ENST00000494935' => array(
'start' => '107634990',
'end' => '107636316',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SOBP-003'
),
'ENST00000618129' => array(
'start' => '107490604',
'end' => '107515073',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOBP-201'
),
'ENST00000368983' => array(
'start' => '108168023',
'end' => '108188802',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-002'
),
'ENST00000368986' => array(
'start' => '108166058',
'end' => '108188809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-001'
),
'ENST00000426403' => array(
'start' => '108168763',
'end' => '108176626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NR2E1-003'
),
'ENST00000484978' => array(
'start' => '108176104',
'end' => '108178147',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NR2E1-004'
),
'ENST00000230085' => array(
'start' => '108211222',
'end' => '108261260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-001'
),
'ENST00000349379' => array(
'start' => '108212005',
'end' => '108261244',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-003'
),
'ENST00000368979' => array(
'start' => '108211513',
'end' => '108261246',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SNX3-002'
),
'ENST00000426155' => array(
'start' => '108211513',
'end' => '108260964',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SNX3-004'
),
'ENST00000368977' => array(
'start' => '108294894',
'end' => '108526001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-001'
),
'ENST00000421954' => array(
'start' => '108295201',
'end' => '108523117',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-006'
),
'ENST00000430458' => array(
'start' => '108294991',
'end' => '108346990',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-004'
),
'ENST00000431865' => array(
'start' => '108356690',
'end' => '108522334',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'LACE1-002'
),
'ENST00000437715' => array(
'start' => '108295753',
'end' => '108356751',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'LACE1-007'
),
'ENST00000481842' => array(
'start' => '108523137',
'end' => '108526796',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'LACE1-005'
),
'ENST00000486863' => array(
'start' => '108476979',
'end' => '108522465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'LACE1-003'
),
'ENST00000369020' => array(
'start' => '107705200',
'end' => '107824312',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-005'
),
'ENST00000369021' => array(
'start' => '107718954',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-201'
),
'ENST00000369022' => array(
'start' => '107704104',
'end' => '107824317',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-008'
),
'ENST00000369025' => array(
'start' => '107704651',
'end' => '107732395',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-002'
),
'ENST00000426221' => array(
'start' => '107740065',
'end' => '107824286',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'SCML4-006'
),
'ENST00000440927' => array(
'start' => '107744949',
'end' => '107772251',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SCML4-007'
),
'ENST00000459992' => array(
'start' => '107719730',
'end' => '107772251',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-009'
),
'ENST00000463507' => array(
'start' => '107720671',
'end' => '107824294',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-004'
),
'ENST00000473515' => array(
'start' => '107718955',
'end' => '107824312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-001'
),
'ENST00000476798' => array(
'start' => '107718445',
'end' => '107732103',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'SCML4-010'
),
'ENST00000479803' => array(
'start' => '107720709',
'end' => '107744054',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SCML4-003'
),
'ENST00000363929' => array(
'start' => '108392073',
'end' => '108392177',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-770P-201'
),
'ENST00000384247' => array(
'start' => '108292766',
'end' => '108292869',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1144P-201'
),
'ENST00000391223' => array(
'start' => '108252401',
'end' => '108252507',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP212-201'
),
'ENST00000412741' => array(
'start' => '107985089',
'end' => '107985690',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-191J18.65-001'
),
'ENST00000417878' => array(
'start' => '108004357',
'end' => '108005568',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL3P7-001'
),
'ENST00000426008' => array(
'start' => '108123515',
'end' => '108156698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-002'
),
'ENST00000441184' => array(
'start' => '108123633',
'end' => '108159392',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'OSTM1-AS1-001'
),
'ENST00000436728' => array(
'start' => '108387512',
'end' => '108388080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP3-466I7.1-001'
),
'ENST00000419801' => array(
'start' => '108275642',
'end' => '108276546',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-128O3.4-001'
),
'ENST00000423135' => array(
'start' => '107985811',
'end' => '107986031',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'MTHFD2P3-001'
),
'ENST00000434149' => array(
'start' => '107931800',
'end' => '107932254',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPL23AP50-001'
),
'ENST00000431564' => array(
'start' => '108252214',
'end' => '108252400',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.5-001'
),
'ENST00000418637' => array(
'start' => '108318079',
'end' => '108318404',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-128O3.6-001'
),
'ENST00000442911' => array(
'start' => '108372772',
'end' => '108372927',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-72I2.1-001'
),
'ENST00000459408' => array(
'start' => '107930088',
'end' => '107930182',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-437P-201'
),
'ENST00000364811' => array(
'start' => '108060818',
'end' => '108060930',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-837'
),
'ENST00000517281' => array(
'start' => '107985659',
'end' => '107985773',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORA73.1-204'
),
'ENST00000607298' => array(
'start' => '108030249',
'end' => '108030718',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP1-111B22.3-001'
),
'ENST00000606070' => array(
'start' => '107957413',
'end' => '107959986',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP1-191J18.66-001'
),
'ENST00000624856' => array(
'start' => '108178871',
'end' => '108179317',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP3-429G5.5-001'
),
'ENST00000624715' => array(
'start' => '108359084',
'end' => '108359863',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-72I2.2-001'
),
'ENST00000623300' => array(
'start' => '107697299',
'end' => '107700218',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP1-47M23.3-001'
),
'ENSMUST00000019937' => array(
'start' => '42761496',
'end' => '42832514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sec63-001'
),
'ENSMUST00000105496' => array(
'start' => '42817928',
'end' => '42829283',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-005'
),
'ENSMUST00000124613' => array(
'start' => '42817928',
'end' => '42829280',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Sec63-004'
),
'ENSMUST00000144228' => array(
'start' => '42761806',
'end' => '42812742',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-003'
),
'ENSMUST00000155410' => array(
'start' => '42761615',
'end' => '42830392',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Sec63-002'
),
'ENSMUST00000019938' => array(
'start' => '42561963',
'end' => '42583632',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-001'
),
'ENSMUST00000105498' => array(
'start' => '42563272',
'end' => '42568828',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-002'
),
'ENSMUST00000126848' => array(
'start' => '42571484',
'end' => '42580345',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-003'
),
'ENSMUST00000143891' => array(
'start' => '42572858',
'end' => '42580774',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nr2e1-004'
),
'ENSMUST00000019939' => array(
'start' => '42502031',
'end' => '42535370',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-001'
),
'ENSMUST00000105499' => array(
'start' => '42502290',
'end' => '42535381',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-003'
),
'ENSMUST00000105500' => array(
'start' => '42502030',
'end' => '42534787',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Snx3-002'
),
'ENSMUST00000040275' => array(
'start' => '43002500',
'end' => '43174530',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-001'
),
'ENSMUST00000189987' => array(
'start' => '43172974',
'end' => '43174521',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sobp-002'
),
'ENSMUST00000040718' => array(
'start' => '42678916',
'end' => '42702459',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-004'
),
'ENSMUST00000105497' => array(
'start' => '42583835',
'end' => '42698323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-003'
),
'ENSMUST00000144806' => array(
'start' => '42583838',
'end' => '42700492',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ostm1-002'
),
'ENSMUST00000147899' => array(
'start' => '42583822',
'end' => '42584731',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ostm1-001'
),
'ENSMUST00000154048' => array(
'start' => '42678966',
'end' => '42699991',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ostm1-005'
),
'ENSMUST00000041024' => array(
'start' => '42312585',
'end' => '42478565',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-001'
),
'ENSMUST00000133326' => array(
'start' => '42312588',
'end' => '42478415',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-003'
),
'ENSMUST00000149832' => array(
'start' => '42313582',
'end' => '42425308',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Lace1-004'
),
'ENSMUST00000151747' => array(
'start' => '42312585',
'end' => '42478280',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Lace1-002'
),
'ENSMUST00000063063' => array(
'start' => '42860370',
'end' => '42960780',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-002'
),
'ENSMUST00000105494' => array(
'start' => '42860793',
'end' => '42960778',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-003'
),
'ENSMUST00000105495' => array(
'start' => '42860667',
'end' => '42934361',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-001'
),
'ENSMUST00000125576' => array(
'start' => '42902473',
'end' => '42935139',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-008'
),
'ENSMUST00000127675' => array(
'start' => '42939881',
'end' => '42958721',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Scml4-006'
),
'ENSMUST00000130511' => array(
'start' => '42934338',
'end' => '42958770',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-004'
),
'ENSMUST00000136841' => array(
'start' => '42865514',
'end' => '42930419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-007'
),
'ENSMUST00000153091' => array(
'start' => '42934916',
'end' => '42948199',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Scml4-005'
),
'ENSMUST00000157071' => array(
'start' => '42860543',
'end' => '42930554',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Scml4-009'
),
'ENSMUST00000117283' => array(
'start' => '42435880',
'end' => '42436065',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15198-001'
),
'ENSMUST00000129933' => array(
'start' => '42740539',
'end' => '42758660',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15199-001'
),
'ENSMUST00000149950' => array(
'start' => '42698036',
'end' => '42698518',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm15200-001'
),
'ENSMUST00000157094' => array(
'start' => '42820463',
'end' => '42820767',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm26464-201'
),
'ENSMUST00000157266' => array(
'start' => '42493423',
'end' => '42493746',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm25277-201'
),
'ENSMUST00000181674' => array(
'start' => '42761596',
'end' => '42763635',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26860-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KA_0001' => array(
'genes_in_region' => array(
'ENSG00000025796' => array(
[maximum depth reached]
),
'ENSG00000081087' => array(
[maximum depth reached]
),
'ENSG00000112320' => array(
[maximum depth reached]
),
'ENSG00000112333' => array(
[maximum depth reached]
),
'ENSG00000112335' => array(
[maximum depth reached]
),
'ENSG00000135537' => array(
[maximum depth reached]
),
'ENSG00000146285' => array(
[maximum depth reached]
),
'ENSG00000212525' => array(
[maximum depth reached]
),
'ENSG00000224987' => array(
[maximum depth reached]
),
'ENSG00000225093' => array(
[maximum depth reached]
),
'ENSG00000225174' => array(
[maximum depth reached]
),
'ENSG00000227072' => array(
[maximum depth reached]
),
'ENSG00000230248' => array(
[maximum depth reached]
),
'ENSG00000232778' => array(
[maximum depth reached]
),
'ENSG00000233511' => array(
[maximum depth reached]
),
'ENSG00000238055' => array(
[maximum depth reached]
),
'ENSG00000238079' => array(
[maximum depth reached]
),
'ENSG00000238420' => array(
[maximum depth reached]
),
'ENSG00000238490' => array(
[maximum depth reached]
),
'ENSG00000271734' => array(
[maximum depth reached]
),
'ENSG00000279398' => array(
[maximum depth reached]
),
'ENSG00000279498' => array(
[maximum depth reached]
),
'ENSG00000280135' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Brain',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Muscle',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Heart',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adrenal',
(int) 48 => 'Brain',
(int) 49 => 'Breast',
(int) 50 => 'Colon',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Brain',
(int) 57 => 'Breast',
(int) 58 => 'Colon',
(int) 59 => 'Heart',
(int) 60 => 'Kidney',
(int) 61 => 'Liver',
(int) 62 => 'Lung',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Bladder',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Liver',
(int) 77 => 'Lung',
(int) 78 => 'Ovary',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Breast',
(int) 83 => 'Colon',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Brain',
(int) 90 => 'Ovary',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Bladder',
(int) 108 => 'Brain',
(int) 109 => 'Breast',
(int) 110 => 'Colon',
(int) 111 => 'Kidney',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Adipose',
(int) 115 => 'Colon',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Brain',
(int) 121 => 'Breast',
(int) 122 => 'Colon',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Lung',
(int) 127 => 'Muscle',
(int) 128 => 'Ovary',
(int) 129 => 'Placenta',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Muscle',
(int) 140 => 'Ovary',
(int) 141 => 'Placenta',
(int) 142 => 'Testis',
(int) 143 => 'Adrenal',
(int) 144 => 'Bladder',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Muscle',
(int) 154 => 'Ovary',
(int) 155 => 'Placenta',
(int) 156 => 'Adipose',
(int) 157 => 'Adrenal',
(int) 158 => 'Breast',
(int) 159 => 'Colon',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Liver',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Placenta',
(int) 166 => 'Testis',
(int) 167 => 'Adipose',
(int) 168 => 'Heart',
(int) 169 => 'Adrenal',
(int) 170 => 'Bladder',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Muscle',
(int) 174 => 'Kidney',
(int) 175 => 'Testis',
(int) 176 => 'Adipose',
(int) 177 => 'Adrenal',
(int) 178 => 'Brain',
(int) 179 => 'Breast',
(int) 180 => 'Colon',
(int) 181 => 'Heart',
(int) 182 => 'Kidney',
(int) 183 => 'Liver',
(int) 184 => 'Lung',
(int) 185 => 'Ovary',
(int) 186 => 'Placenta',
(int) 187 => 'Bladder',
(int) 188 => 'Breast',
(int) 189 => 'Lung',
(int) 190 => 'Ovary',
(int) 191 => 'Placenta',
(int) 192 => 'Testis',
(int) 193 => 'Placenta',
(int) 194 => 'Breast',
(int) 195 => 'Heart',
(int) 196 => 'Kidney',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta',
(int) 200 => 'Testis',
(int) 201 => 'Adipose',
(int) 202 => 'Brain',
(int) 203 => 'Breast',
(int) 204 => 'Colon',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Testis',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Liver',
(int) 212 => 'Lung',
(int) 213 => 'Ovary',
(int) 214 => 'Placenta',
(int) 215 => 'Adrenal',
(int) 216 => 'Colon',
(int) 217 => 'Adrenal',
(int) 218 => 'Brain',
(int) 219 => 'Breast',
(int) 220 => 'Kidney',
(int) 221 => 'Testis',
(int) 222 => 'Adipose',
(int) 223 => 'Adrenal',
(int) 224 => 'Brain',
(int) 225 => 'Breast',
(int) 226 => 'Colon',
(int) 227 => 'Heart',
(int) 228 => 'Kidney',
(int) 229 => 'Liver',
(int) 230 => 'Lung',
(int) 231 => 'Muscle',
(int) 232 => 'Ovary',
(int) 233 => 'Placenta',
(int) 234 => 'Testis',
(int) 235 => 'Brain',
(int) 236 => 'Testis',
(int) 237 => 'Kidney',
(int) 238 => 'Liver',
(int) 239 => 'Ovary',
(int) 240 => 'Testis',
(int) 241 => 'Adrenal',
(int) 242 => 'Brain',
(int) 243 => 'Breast',
(int) 244 => 'Liver',
(int) 245 => 'Lung',
(int) 246 => 'Ovary',
(int) 247 => 'Testis',
(int) 248 => 'Bladder',
(int) 249 => 'Breast',
(int) 250 => 'Heart',
(int) 251 => 'Kidney',
(int) 252 => 'Liver',
(int) 253 => 'Ovary',
(int) 254 => 'Testis',
(int) 255 => 'Adrenal',
(int) 256 => 'Heart',
(int) 257 => 'Muscle',
(int) 258 => 'Adrenal',
(int) 259 => 'Brain',
(int) 260 => 'Breast',
(int) 261 => 'Colon',
(int) 262 => 'Heart',
(int) 263 => 'Liver',
(int) 264 => 'Lung',
(int) 265 => 'Ovary',
(int) 266 => 'Placenta',
(int) 267 => 'Testis',
(int) 268 => 'Brain',
(int) 269 => 'Testis',
(int) 270 => 'Brain',
(int) 271 => 'Kidney',
(int) 272 => 'Ovary',
(int) 273 => 'Testis',
(int) 274 => 'Adipose',
(int) 275 => 'Adrenal',
(int) 276 => 'Brain',
(int) 277 => 'Colon',
(int) 278 => 'Kidney',
(int) 279 => 'Muscle',
(int) 280 => 'Ovary',
(int) 281 => 'Placenta',
(int) 282 => 'Testis',
(int) 283 => 'Brain',
(int) 284 => 'Ovary',
(int) 285 => 'Adrenal',
(int) 286 => 'Breast',
(int) 287 => 'Heart',
(int) 288 => 'Liver',
(int) 289 => 'Ovary',
(int) 290 => 'Adrenal',
(int) 291 => 'Brain',
(int) 292 => 'Breast',
(int) 293 => 'Colon',
(int) 294 => 'Kidney',
(int) 295 => 'Liver',
(int) 296 => 'Lung',
(int) 297 => 'Ovary',
(int) 298 => 'Placenta',
(int) 299 => 'Testis'
)
),
'CIL_0007KA_0003' => array(
'genes_in_region' => array(
'ENSMUSG00000019802' => array(
[maximum depth reached]
),
'ENSMUSG00000019803' => array(
[maximum depth reached]
),
'ENSMUSG00000019804' => array(
[maximum depth reached]
),
'ENSMUSG00000038248' => array(
[maximum depth reached]
),
'ENSMUSG00000038280' => array(
[maximum depth reached]
),
'ENSMUSG00000038302' => array(
[maximum depth reached]
),
'ENSMUSG00000044770' => array(
[maximum depth reached]
),
'ENSMUSG00000083429' => array(
[maximum depth reached]
),
'ENSMUSG00000086428' => array(
[maximum depth reached]
),
'ENSMUSG00000087719' => array(
[maximum depth reached]
),
'ENSMUSG00000087891' => array(
[maximum depth reached]
),
'ENSMUSG00000097008' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Liver',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Testis',
(int) 20 => 'Adrenal',
(int) 21 => 'Brain',
(int) 22 => 'Breast',
(int) 23 => 'Colon',
(int) 24 => 'Liver',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Ovary',
(int) 29 => 'Testis',
(int) 30 => 'Liver',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Adrenal',
(int) 34 => 'Bladder',
(int) 35 => 'Brain',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Heart',
(int) 39 => 'Kidney',
(int) 40 => 'Liver',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Adrenal',
(int) 48 => 'Bladder',
(int) 49 => 'Brain',
(int) 50 => 'Breast',
(int) 51 => 'Colon',
(int) 52 => 'Heart',
(int) 53 => 'Kidney',
(int) 54 => 'Liver',
(int) 55 => 'Lung',
(int) 56 => 'Muscle',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Brain',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Brain',
(int) 68 => 'Breast',
(int) 69 => 'Colon',
(int) 70 => 'Heart',
(int) 71 => 'Kidney',
(int) 72 => 'Liver',
(int) 73 => 'Lung',
(int) 74 => 'Muscle',
(int) 75 => 'Ovary',
(int) 76 => 'Placenta',
(int) 77 => 'Testis',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Adipose',
(int) 81 => 'Adrenal',
(int) 82 => 'Bladder',
(int) 83 => 'Brain',
(int) 84 => 'Breast',
(int) 85 => 'Colon',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Brain',
(int) 95 => 'Ovary',
(int) 96 => 'Testis',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Lung',
(int) 114 => 'Adipose',
(int) 115 => 'Bladder',
(int) 116 => 'Brain',
(int) 117 => 'Breast',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Muscle',
(int) 123 => 'Ovary',
(int) 124 => 'Placenta',
(int) 125 => 'Testis',
(int) 126 => 'Adipose',
(int) 127 => 'Adrenal',
(int) 128 => 'Bladder',
(int) 129 => 'Brain',
(int) 130 => 'Breast',
(int) 131 => 'Colon',
(int) 132 => 'Heart',
(int) 133 => 'Kidney',
(int) 134 => 'Liver',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Brain',
(int) 141 => 'Breast',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Liver',
(int) 145 => 'Muscle',
(int) 146 => 'Ovary',
(int) 147 => 'Placenta',
(int) 148 => 'Testis',
(int) 149 => 'Breast',
(int) 150 => 'Kidney',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Adrenal',
(int) 154 => 'Breast',
(int) 155 => 'Kidney',
(int) 156 => 'Liver',
(int) 157 => 'Lung',
(int) 158 => 'Adipose',
(int) 159 => 'Colon',
(int) 160 => 'Kidney',
(int) 161 => 'Liver',
(int) 162 => 'Ovary',
(int) 163 => 'Placenta',
(int) 164 => 'Testis',
(int) 165 => 'Adipose',
(int) 166 => 'Adrenal',
(int) 167 => 'Bladder',
(int) 168 => 'Breast',
(int) 169 => 'Heart',
(int) 170 => 'Kidney',
(int) 171 => 'Liver',
(int) 172 => 'Lung',
(int) 173 => 'Muscle',
(int) 174 => 'Ovary',
(int) 175 => 'Placenta',
(int) 176 => 'Kidney',
(int) 177 => 'Liver',
(int) 178 => 'Lung',
(int) 179 => 'Muscle',
(int) 180 => 'Ovary',
(int) 181 => 'Placenta',
(int) 182 => 'Adipose',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Kidney',
(int) 186 => 'Liver',
(int) 187 => 'Ovary',
(int) 188 => 'Placenta',
(int) 189 => 'Adipose',
(int) 190 => 'Brain',
(int) 191 => 'Breast',
(int) 192 => 'Colon',
(int) 193 => 'Liver',
(int) 194 => 'Lung',
(int) 195 => 'Ovary',
(int) 196 => 'Placenta',
(int) 197 => 'Testis',
(int) 198 => 'Adipose',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Ovary',
(int) 209 => 'Placenta',
(int) 210 => 'Testis',
(int) 211 => 'Placenta',
(int) 212 => 'Ovary'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KA_0002',
'tax_id' => '9606',
'chromosome' => '6',
'seq_start' => '108443378',
'seq_end' => '108477256',
'region_length' => '33878',
'region_type' => 'UCNEbase',
'el_id' => 'LACE1'
)
)
$gene_el = array(
'ENST00000623300' => array(
'Adrenal' => array(
'average_FPKM' => '1.721',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.07'
),
'Colon' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.308',
'stddev_FPKM' => '0.13'
),
'Ovary' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.02'
),
'Placenta' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.06'
)
)
)
$gene_key = 'ENSG00000280135'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '1.721',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.07'
),
'Colon' => array(
'average_FPKM' => '0.044',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.059',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.045',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.308',
'stddev_FPKM' => '0.13'
),
'Ovary' => array(
'average_FPKM' => '0.057',
'stddev_FPKM' => '0.02'
),
'Placenta' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.094',
'stddev_FPKM' => '0.06'
)
)
$tran_key = 'ENST00000623300'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| LACE1 |
UCNEbase |
9606 |
6:108443378-108477256  |
| Gene | Transcript | Position | Biotype |
|---|
(SEC63)