C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007KR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
DLX6 UCNEbase 9606 7:96591845-97012332
GeneTranscriptPositionBiotype
ENSG00000006377 (DLX6)
distal-less homeobox 6 		ENST00000493273 (DLX6-002) 97006493-97010176 processed_transcript
ENST00000518156 (DLX6-001) 97005548-97011039 protein_coding
ENST00000555308 (DLX6-003) 97007425-97010054 protein_coding
ENSG00000127922 (SHFM1)
split hand/foot malformation (ectrodactyly) type 1 		ENST00000248566 (SHFM1-003) 96687951-96709891 protein_coding
ENST00000356686 (SHFM1-201) 96481626-96496342 protein_coding
ENST00000413065 (SHFM1-006) 96673457-96709851 protein_coding
ENST00000417009 (SHFM1-008) 96622562-96709861 protein_coding
ENST00000444799 (SHFM1-007) 96649195-96709858 protein_coding
ENST00000449279 (SHFM1-004) 96672564-96709880 nonsense_mediated_decay
ENST00000466986 (SHFM1-002) 96486206-96709812 nonsense_mediated_decay
ENST00000476463 (SHFM1-009) 96706222-96709873 processed_transcript
ENST00000482389 (SHFM1-010) 96688769-96697372 retained_intron
ENST00000488005 (SHFM1-005) 96673249-96709851 protein_coding
ENST00000493858 (SHFM1-001) 96481626-96503523 processed_transcript
ENST00000606019 (SHFM1-015) 96621657-96664338 processed_transcript
ENST00000611360 (SHFM1-012) 96483713-96503510 processed_transcript
ENST00000613919 (SHFM1-011) 96486273-96709775 nonsense_mediated_decay
ENST00000615352 (SHFM1-202) 96481626-96496342 protein_coding
ENST00000616956 (SHFM1-019) 96622430-96645932 processed_transcript
ENST00000617133 (SHFM1-020) 96486272-96709775 nonsense_mediated_decay
ENST00000618028 (SHFM1-018) 96645823-96664245 processed_transcript
ENST00000618105 (SHFM1-014) 96486272-96709775 nonsense_mediated_decay
ENST00000619259 (SHFM1-013) 96486272-96709775 nonsense_mediated_decay
ENST00000622128 (SHFM1-016) 96645838-96664285 processed_transcript
ENST00000622838 (SHFM1-017) 96645390-96664285 processed_transcript
ENST00000623498 (SHFM1-021) 96645588-96709826 protein_coding
ENST00000623693 (SHFM1-022) 96645391-96709780 protein_coding
ENSG00000227284 (MARK2P10)
MAP/microtubule affinity-regulating kinase 2 pseudogene 10 		ENST00000454959 (MARK2P10-001) 96858182-96859618 processed_pseudogene
ENSG00000231764 (DLX6-AS1)
DLX6 antisense RNA 1 		ENST00000430027 (DLX6-AS1-001) 96955141-97014065 antisense
ENST00000430404 (DLX6-AS1-005) 96968527-97011882 antisense
ENST00000431497 (DLX6-AS1-003) 96965527-97004298 antisense
ENST00000437331 (DLX6-AS1-004) 96965527-97014060 antisense
ENST00000437541 (DLX6-AS1-006) 96979081-97011882 antisense
ENST00000452769 (DLX6-AS1-007) 96965434-97014064 antisense
ENST00000458352 (DLX6-AS1-002) 96978468-97012049 antisense
ENST00000605417 (DLX6-AS1-008) 96965527-97014025 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0007KR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
DLX6 UCNEbase 10090 6:6458887-6869817
GeneTranscriptPositionBiotype
ENSMUSG00000029754 (Dlx6)
distal-less homeobox 6 		ENSMUST00000031768 (Dlx6-002) 6863797-6867967 protein_coding
ENSMUST00000160937 (Dlx6-001) 6863334-6868568 protein_coding
ENSMUST00000171311 (Dlx6-201) 6863334-6867970 protein_coding
ENSMUST00000172943 (Dlx6-004) 6863798-6865430 retained_intron
ENSMUSG00000042541 (Shfm1)
split hand/foot malformation (ectrodactyly) type 1 		ENSMUST00000041111 (Shfm1-001) 6557294-6578658 protein_coding
ENSMUSG00000090063 (Dlx6os1)
distal-less homeobox 6, opposite strand 1 		ENSMUST00000159568 (Dlx6os1-001) 6820543-6869531 antisense
ENSMUST00000159827 (Dlx6os1-002) 6820189-6861591 antisense
ENSMUSG00000093380 (Gm20685)
predicted gene 20685 		ENSMUST00000176654 (Gm20685-001) 6483022-6508616 lincRNA
ENSMUSG00000093581 (Gm18006)
predicted gene, 18006 		ENSMUST00000177411 (Gm18006-001) 6645334-6647278 processed_pseudogene
ENSMUSG00000093651 (Gm5873)
predicted gene 5873 		ENSMUST00000177157 (Gm5873-001) 6735427-6736492 processed_pseudogene
ENSMUSG00000093658 (Gm20617)
predicted gene 20617 		ENSMUST00000177082 (Gm20617-002) 6456593-6484487 lincRNA
ENSMUST00000177332 (Gm20617-001) 6456189-6484321 lincRNA
ENSMUSG00000093675 (Gm20618)
predicted gene 20618 		ENSMUST00000177161 (Gm20618-001) 6633486-6691521 lincRNA
ENSMUST00000177482 (Gm20618-002) 6603712-6684806 lincRNA
ENSMUSG00000094868 (Dlx6os2)
distal-less homeobox 6, opposite strand 2 		ENSMUST00000178206 (Dlx6os2-001) 6863797-6865150 antisense

Mus musculus Ensembl (GRCm38)

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CIL_0007KR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
DLX6 UCNEbase 7955 19:42435822-42439661
GeneTranscriptPositionBiotype
ENSDARG00000042291 (dlx6a)
distal-less homeobox gene 6a 		ENSDART00000102778 (dlx6a-001) 42436801-42438972 protein_coding
ENSDART00000148732 (dlx6a-003) 42391450-42438798 protein_coding
ENSDART00000149799 (dlx6a-002) 42391450-42438855 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KR_0001ENSG00000006377ENST00000493273ENST00000518156ENST00000555308ENSG00000127922ENST00000248566ENST00000356686ENST00000413065ENST00000417009ENST00000444799ENST00000449279ENST00000466986ENST00000476463ENST00000482389ENST00000488005ENST00000493858ENST00000606019ENST00000611360ENST00000613919ENST00000615352ENST00000616956ENST00000617133ENST00000618028ENST00000618105ENST00000619259ENST00000622128ENST00000622838ENST00000623498ENST00000623693ENSG00000227284ENST00000454959ENSG00000231764ENST00000430027ENST00000430404ENST00000431497ENST00000437331ENST00000437541ENST00000452769ENST00000458352ENST00000605417CIL_0007KR_0002ENSMUSG00000029754ENSMUST00000031768ENSMUST00000160937ENSMUST00000171311ENSMUST00000172943ENSMUSG00000042541ENSMUST00000041111ENSMUSG00000090063ENSMUST00000159568ENSMUST00000159827ENSMUSG00000093380ENSMUST00000176654ENSMUSG00000093581ENSMUST00000177411ENSMUSG00000093651ENSMUST00000177157ENSMUSG00000093658ENSMUST00000177082ENSMUST00000177332ENSMUSG00000093675ENSMUST00000177161ENSMUST00000177482ENSMUSG00000094868ENSMUST00000178206CIL_0007KR_0003ENSDARG00000042291ENSDART00000102778ENSDART00000148732ENSDART00000149799
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KR_0001ENSG00000006377ENST00000493273ENST00000518156ENST00000555308ENSG00000127922ENST00000248566ENST00000417009ENST00000444799ENST00000482389ENSG00000227284ENST00000454959ENSG00000231764ENST00000430027ENST00000430404ENST00000431497ENST00000437331ENST00000437541ENST00000452769ENST00000458352CIL_0007KR_0002ENSMUSG00000029754ENSMUST00000031768ENSMUST00000160937ENSMUST00000171311ENSMUSG00000042541ENSMUST00000041111ENSMUSG00000090063ENSMUST00000159568ENSMUST00000159827ENSMUSG00000093380ENSMUST00000176654ENSMUSG00000093581ENSMUST00000177411ENSMUSG00000093651ENSMUST00000177157ENSMUSG00000093658ENSMUST00000177082ENSMUST00000177332ENSMUSG00000093675ENSMUST00000177161ENSMUST00000177482ENSMUSG00000094868ENSMUST00000178206CIL_0007KR_0003ENSDARG00000042291ENSDART00000102778ENSDART00000148732ENSDART00000149799
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006377 ENST00000493273 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.10 2.721±0.00 2.197±0.00
ENST00000518156 0.023±0.00 0.306±0.00 N/A 0.522±0.26 0.009±0.00 0.055±0.00 N/A 0.021±0.00 N/A N/A 0.112±0.02 0.063±0.03 2.618±0.25 1.491±0.22
ENST00000555308 0.047±0.00 N/A N/A 0.418±0.00 0.024±0.00 0.063±0.00 N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A
ENSG00000127922 ENST00000248566 19.496±0.00 14.333±0.00 2.615±0.00 8.629±1.31 9.605±2.31 8.669±3.35 4.773±0.33 6.695±0.21 6.563±1.53 7.063±1.75 6.682±0.68 37.411±30.10 28.905±17.80 32.036±8.50
ENST00000356686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000413065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417009 89.863±0.00 81.359±0.00 19.066±0.00 32.444±12.57 53.659±40.13 49.581±33.57 28.932±13.64 41.160±0.22 45.023±27.06 54.008±0.00 23.823±9.02 230.760±189.75 115.272±74.10 157.921±35.29
ENST00000444799 N/A N/A N/A 1.889±0.00 N/A N/A N/A N/A 1.793±0.00 2.419±0.00 N/A N/A N/A N/A
ENST00000449279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482389 N/A 2.780±0.00 0.772±0.00 0.939±0.00 1.137±0.00 N/A N/A N/A N/A 2.110±0.00 N/A 1.608±0.00 N/A N/A
ENST00000488005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227284 ENST00000454959 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A 0.021±0.00
ENSG00000231764 ENST00000430027 N/A 0.038±0.00 N/A 0.688±0.00 0.013±0.01 N/A 0.005±0.00 0.018±0.01 0.001±0.00 0.011±0.00 0.005±0.00 0.003±0.00 0.052±0.02 0.005±0.00
ENST00000430404 0.045±0.00 N/A 0.051±0.00 N/A N/A N/A 0.039±0.00 N/A N/A 0.085±0.00 N/A 0.038±0.00 0.437±0.00 0.085±0.00
ENST00000431497 N/A N/A N/A 0.826±0.35 N/A N/A N/A N/A N/A N/A N/A N/A 0.352±0.14 0.126±0.00
ENST00000437331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.08 0.470±0.00 N/A
ENST00000437541 N/A 0.867±0.00 N/A N/A 0.244±0.00 N/A N/A 0.236±0.00 0.675±0.58 0.072±0.00 0.153±0.00 N/A N/A 0.284±0.00
ENST00000452769 N/A 0.228±0.00 N/A N/A 0.034±0.00 0.034±0.00 0.017±0.00 N/A 0.060±0.06 N/A N/A 0.042±0.03 0.204±0.14 0.120±0.00
ENST00000458352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 0.373±0.00 N/A
ENST00000605417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029754 ENSMUST00000031768 4.818±2.01 0.101±0.00 N/A N/A N/A N/A 0.014±0.00 N/A 0.007±0.00 N/A 0.079±0.00 0.780±0.51 N/A 3.310±0.82
ENSMUST00000160937 0.309±0.29 0.043±0.03 0.013±0.00 1.352±0.84 0.088±0.04 0.151±0.07 0.016±0.00 0.033±0.02 0.036±0.03 0.074±0.04 0.023±0.00 0.631±0.39 0.027±0.01 0.236±0.01
ENSMUST00000171311 0.822±0.82 N/A N/A 4.267±1.99 N/A N/A N/A N/A 0.003±0.00 N/A N/A 0.347±0.09 0.018±0.01 1.288±0.49
ENSMUST00000172943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000042541 ENSMUST00000041111 20.140±5.83 16.411±1.52 40.598±1.84 13.634±5.00 14.402±5.17 26.797±3.04 20.897±4.34 24.445±4.75 37.267±18.12 30.813±1.46 25.093±4.54 25.641±4.60 36.321±16.85 25.732±3.90
ENSMUSG00000090063 ENSMUST00000159568 0.386±0.06 0.074±0.00 N/A 1.295±0.00 N/A N/A 0.012±0.00 N/A 0.005±0.00 N/A N/A 0.168±0.13 0.003±0.00 N/A
ENSMUST00000159827 1.220±0.15 N/A N/A 0.402±0.00 N/A N/A N/A N/A 0.027±0.00 N/A N/A 0.123±0.07 0.003±0.00 0.108±0.00
ENSMUSG00000093380 ENSMUST00000176654 N/A N/A N/A 0.023±0.00 N/A N/A 0.187±0.09 N/A N/A N/A N/A 0.092±0.00 N/A 0.138±0.06
ENSMUSG00000093581 ENSMUST00000177411 0.096±0.00 N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093651 ENSMUST00000177157 0.713±0.30 0.349±0.22 N/A 0.105±0.02 0.322±0.15 0.414±0.19 0.051±0.03 0.157±0.10 0.099±0.04 0.376±0.14 N/A 1.037±0.53 0.010±0.01 0.411±0.12
ENSMUSG00000093658 ENSMUST00000177082 N/A N/A N/A N/A N/A N/A 0.072±0.02 0.054±0.00 N/A N/A N/A N/A N/A 0.017±0.00
ENSMUST00000177332 N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 0.016±0.00 N/A N/A N/A 0.014±0.00 N/A
ENSMUSG00000093675 ENSMUST00000177161 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A 0.090±0.00 N/A 0.466±0.07 N/A N/A
ENSMUST00000177482 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 N/A N/A N/A 0.031±0.02 N/A
ENSMUSG00000094868 ENSMUST00000178206 N/A 0.149±0.02 N/A 0.770±0.00 N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042291 ENSDART00000102778 N/A N/A N/A 2.093±2.19 N/A N/A N/A 0.789±0.00 0.045±0.00 N/A 0.365±0.00 N/A N/A N/A
ENSDART00000148732 N/A N/A N/A N/A N/A N/A N/A 1.621±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000149799 N/A N/A N/A 1.791±0.22 N/A N/A N/A 2.524±0.00 0.294±0.00 N/A 0.351±0.00 N/A N/A N/A

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