C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007KT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
BCL11B UCNEbase 9606 14:98137606-99417500
GeneTranscriptPositionBiotype
ENSG00000127152 (BCL11B)
B-cell CLL/lymphoma 11B (zinc finger protein) 		ENST00000345514 (BCL11B-002) 99169287-99271485 protein_coding
ENST00000357195 (BCL11B-001) 99169287-99271228 protein_coding
ENST00000443726 (BCL11B-003) 99173961-99271524 protein_coding
ENSG00000176605 (C14orf177)
chromosome 14 open reading frame 177 		ENST00000325812 (C14orf177-001) 98711613-98717761 protein_coding
ENST00000541516 (C14orf177-002) 98711620-98717121 protein_coding
ENST00000546029 (C14orf177-003) 98711662-98716173 processed_transcript
ENSG00000183576 (SETD3)
SET domain containing 3 		ENST00000329331 (SETD3-003) 99409804-99480788 protein_coding
ENST00000331768 (SETD3-001) 99397746-99480879 protein_coding
ENST00000357563 (SETD3-004) 99411578-99480837 nonsense_mediated_decay
ENST00000436070 (SETD3-002) 99411279-99480790 protein_coding
ENST00000446066 (SETD3-005) 99398469-99480801 nonsense_mediated_decay
ENST00000453764 (SETD3-008) 99405315-99480860 nonsense_mediated_decay
ENST00000453938 (SETD3-007) 99458299-99478769 processed_transcript
ENST00000489770 (SETD3-006) 99398732-99413250 retained_intron
ENSG00000229402 (AL162151.4)
 ENST00000423922 (AL162151.4-001) 99158416-99159669 antisense
ENSG00000232573 (RPL3P4)
ribosomal protein L3 pseudogene 4 		ENST00000417615 (RPL3P4-001) 98972879-98973301 processed_pseudogene
ENSG00000234648 (AL162151.3)
 ENST00000448875 (AL162151.3-001) 98973314-98973471 processed_pseudogene
ENSG00000235785 (AL109767.1)
 ENST00000429450 (AL109767.1-001) 99262948-99264735 antisense
ENSG00000241757 (RN7SL714P)
RNA, 7SL, cytoplasmic 714, pseudogene 		ENST00000487050 (RN7SL714P-201) 98351367-98351664 misc_RNA
ENSG00000258383 (CTD-2200A16.1)
 ENST00000555595 (CTD-2200A16.1-001) 99324799-99332015 lincRNA
ENSG00000258511 (RP11-61O1.2)
 ENST00000557072 (RP11-61O1.2-001) 98136074-98139242 lincRNA
ENSG00000259097 (RP11-61O1.1)
 ENST00000555776 (RP11-61O1.1-001) 98068240-98205143 lincRNA
ENSG00000259119 (RP11-1127D7.1)
 ENST00000554025 (RP11-1127D7.1-001) 98925137-98927805 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007KT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
BCL11B UCNEbase 10090 12:107085268-108123079
GeneTranscriptPositionBiotype
ENSMUSG00000048251 (Bcl11b)
B cell leukemia/lymphoma 11B 		ENSMUST00000066060 (Bcl11b-001) 107910403-108003602 protein_coding
ENSMUST00000109887 (Bcl11b-002) 107915222-108003414 protein_coding
ENSMUST00000109891 (Bcl11b-003) 107915222-108003414 protein_coding
ENSMUSG00000056770 (Setd3)
SET domain containing 3 		ENSMUST00000071095 (Setd3-001) 108106431-108179314 protein_coding
ENSMUST00000109879 (Setd3-007) 108116775-108179216 protein_coding
ENSMUST00000125210 (Setd3-006) 108112130-108115083 processed_transcript
ENSMUST00000125916 (Setd3-005) 108157984-108179213 protein_coding
ENSMUST00000132682 (Setd3-002) 108107038-108179227 nonsense_mediated_decay
ENSMUST00000147466 (Setd3-003) 108117034-108179263 nonsense_mediated_decay
ENSMUST00000148119 (Setd3-004) 108106666-108114947 retained_intron
ENSMUST00000169951 (Setd3-008) 108118297-108163009 processed_transcript
ENSMUSG00000079359 (Gm9006)
predicted gene 9006 		ENSMUST00000165520 (Gm9006-001) 107613000-107613840 processed_pseudogene
ENSMUSG00000082362 (Gm5187)
predicted gene 5187 		ENSMUST00000117317 (Gm5187-001) 107205076-107206066 processed_pseudogene
ENSMUSG00000084871 (Gm2800)
predicted gene 2800 		ENSMUST00000122988 (Gm2800-001) 107183555-107186734 lincRNA
ENSMUSG00000085120 (Gm16086)
predicted gene 16086 		ENSMUST00000143652 (Gm16086-001) 107079360-107099673 lincRNA
ENSMUSG00000085641 (4930465M20Rik)
RIKEN cDNA 4930465M20 gene 		ENSMUST00000130564 (4930465M20Rik-001) 107723740-107735488 lincRNA
ENSMUST00000144556 (4930465M20Rik-002) 107729361-107735496 lincRNA
ENSMUSG00000086037 (Gm16085)
predicted gene 16085 		ENSMUST00000144575 (Gm16085-001) 107129681-107132576 lincRNA
ENSMUSG00000086975 (Gm15208)
predicted gene 15208 		ENSMUST00000134448 (Gm15208-001) 107744136-107784041 lincRNA
ENSMUSG00000090607 (Gm17052)
predicted gene 17052 		ENSMUST00000165496 (Gm17052-001) 107419141-107419429 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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CIL_0007KT_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
BCL11B UCNEbase 7955 17:17947383-18298599
GeneTranscriptPositionBiotype
ENSDARG00000062510 (bcl11ba)
B-cell CLL/lymphoma 11Ba (zinc finger protein) 		ENSDART00000090487 (bcl11ba-003) 18005841-18008300 processed_transcript
ENSDART00000123745 (bcl11ba-002) 17948129-17965884 protein_coding
ENSDART00000144894 (bcl11ba-001) 17947511-18006449 protein_coding
ENSDART00000154646 (bcl11ba-201) 18004130-18006449 protein_coding
ENSDARG00000097921 (si:dkeyp-59a12.1)
si:dkeyp-59a12.1 		ENSDART00000156616 (si:dkeyp-59a12.1-001) 18067425-18105486 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0007KT_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
BCL11B UCNEbase 7955 20:4456266-4598309
GeneTranscriptPositionBiotype
ENSDARG00000067727 (BCL11B (2 of 2))
B-cell CLL/lymphoma 11B (zinc finger protein) 		ENSDART00000097543 (BCL11B (2 of 2)-201) 4428701-4489810 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KT_0001ENSG00000127152ENST00000345514ENST00000357195ENST00000443726ENSG00000176605ENST00000325812ENSG00000183576ENST00000329331ENST00000331768ENST00000446066ENSG00000229402ENST00000423922ENSG00000232573ENST00000417615ENSG00000234648ENST00000448875ENSG00000235785ENST00000429450ENSG00000241757ENST00000487050ENSG00000258383ENST00000555595ENSG00000258511ENST00000557072ENSG00000259097ENST00000555776ENSG00000259119ENST00000554025CIL_0007KT_0002ENSMUSG00000048251ENSMUST00000066060ENSMUST00000109887ENSMUST00000109891ENSMUSG00000056770ENSMUST00000071095ENSMUST00000109879ENSMUST00000132682ENSMUST00000147466ENSMUST00000148119ENSMUSG00000079359ENSMUST00000165520ENSMUSG00000082362ENSMUST00000117317ENSMUSG00000084871ENSMUST00000122988ENSMUSG00000085120ENSMUST00000143652ENSMUSG00000085641ENSMUST00000130564ENSMUST00000144556ENSMUSG00000086037ENSMUST00000144575ENSMUSG00000086975ENSMUST00000134448ENSMUSG00000090607ENSMUST00000165496CIL_0007KT_0003ENSDARG00000062510ENSDART00000090487ENSDART00000123745ENSDART00000144894ENSDART00000154646ENSDARG00000097921ENSDART00000156616CIL_0007KT_0004ENSDARG00000067727ENSDART00000097543
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127152 ENST00000345514 N/A N/A N/A 0.484±0.00 0.267±0.00 1.768±0.00 N/A N/A 0.631±0.00 0.405±0.00 N/A 0.107±0.00 N/A N/A
ENST00000357195 N/A 2.189±0.00 N/A 0.800±0.30 0.250±0.00 N/A N/A N/A 0.445±0.00 1.472±0.12 0.015±0.00 0.495±0.31 0.046±0.02 0.189±0.04
ENST00000443726 N/A N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000176605 ENST00000325812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.175±0.00
ENST00000541516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183576 ENST00000329331 N/A N/A N/A 26.666±0.00 8.240±0.00 10.123±0.00 9.936±0.00 14.218±0.00 20.359±0.00 16.424±0.00 13.872±0.00 15.596±0.00 N/A N/A
ENST00000331768 17.977±0.00 13.093±0.00 1.764±0.00 24.655±0.00 10.335±7.40 11.677±8.64 18.011±11.77 33.219±0.00 11.542±1.31 24.172±0.00 21.958±17.76 8.482±5.66 17.076±3.54 35.234±4.98
ENST00000357563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446066 4.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.387±0.00 N/A N/A 19.751±0.00
ENST00000453764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229402 ENST00000423922 N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A 0.957±0.00
ENSG00000232573 ENST00000417615 N/A N/A 2.258±0.00 0.251±0.00 2.198±0.00 3.609±0.00 N/A 2.852±0.00 5.286±0.00 0.825±0.00 0.039±0.00 8.440±6.78 0.129±0.04 N/A
ENSG00000234648 ENST00000448875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00 N/A
ENSG00000235785 ENST00000429450 N/A 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241757 ENST00000487050 0.052±0.00 0.380±0.00 N/A 0.228±0.00 0.334±0.00 N/A 0.051±0.00 0.109±0.00 0.049±0.00 N/A N/A 0.735±0.00 N/A 0.099±0.00
ENSG00000258383 ENST00000555595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00
ENSG00000258511 ENST00000557072 N/A 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259097 ENST00000555776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00
ENSG00000259119 ENST00000554025 N/A 0.071±0.00 N/A 0.020±0.00 N/A N/A 0.008±0.00 N/A N/A 0.032±0.00 0.008±0.00 0.027±0.00 N/A 0.037±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048251 ENSMUST00000066060 0.065±0.02 0.028±0.01 0.022±0.00 5.356±1.18 2.856±1.49 1.469±0.32 0.112±0.03 0.319±0.06 0.034±0.02 0.428±0.07 0.009±0.00 0.108±0.08 0.020±0.01 0.018±0.01
ENSMUST00000109887 0.068±0.01 0.179±0.05 0.086±0.00 N/A N/A N/A 0.233±0.11 0.862±0.27 0.046±0.03 0.277±0.00 0.024±0.00 0.127±0.05 0.129±0.07 0.070±0.02
ENSMUST00000109891 0.137±0.01 0.141±0.02 0.089±0.00 13.205±1.03 8.054±4.23 3.265±0.69 0.162±0.04 0.673±0.16 0.063±0.04 0.756±0.21 N/A 0.077±0.03 0.116±0.02 0.031±0.01
ENSMUSG00000056770 ENSMUST00000071095 15.095±5.94 4.269±2.00 30.605±0.40 15.427±2.52 5.585±2.70 8.207±4.33 10.692±3.72 15.993±5.93 15.356±8.12 8.276±3.89 40.232±0.84 8.705±8.53 15.555±5.56 17.960±6.41
ENSMUST00000109879 3.740±0.00 2.334±0.31 N/A N/A 2.129±0.26 2.104±0.55 N/A N/A 2.365±0.28 2.533±0.06 N/A 2.209±0.44 N/A N/A
ENSMUST00000125210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.426±1.41 6.163±0.83 N/A
ENSMUST00000147466 N/A N/A N/A N/A 2.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148119 3.817±0.45 2.378±0.29 N/A 3.771±0.13 1.941±0.29 2.737±0.17 N/A N/A 2.303±0.49 2.997±0.72 N/A 2.704±1.49 2.167±0.02 2.355±0.00
ENSMUST00000169951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079359 ENSMUST00000165520 0.051±0.00 N/A N/A 0.010±0.00 0.068±0.00 0.287±0.08 N/A 0.114±0.05 0.128±0.02 0.079±0.00 N/A 0.187±0.16 0.023±0.00 0.061±0.00
ENSMUSG00000082362 ENSMUST00000117317 0.106±0.08 0.131±0.00 N/A 0.025±0.02 0.074±0.01 0.062±0.00 0.031±0.00 0.039±0.02 N/A N/A N/A 0.041±0.00 N/A N/A
ENSMUSG00000084871 ENSMUST00000122988 N/A N/A N/A 0.041±0.00 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085120 ENSMUST00000143652 N/A N/A N/A 0.072±0.00 0.941±0.32 N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A
ENSMUSG00000085641 ENSMUST00000130564 N/A N/A N/A N/A 0.044±0.02 N/A N/A N/A N/A N/A N/A N/A N/A 4.018±2.49
ENSMUST00000144556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.125±0.48
ENSMUSG00000086037 ENSMUST00000144575 N/A N/A N/A N/A 0.305±0.17 N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000086975 ENSMUST00000134448 N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090607 ENSMUST00000165496 0.456±0.00 N/A N/A 0.065±0.00 N/A 1.100±0.38 N/A N/A 0.966±0.85 0.516±0.00 N/A 1.076±0.68 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000062510 ENSDART00000090487 N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 N/A N/A N/A N/A N/A
ENSDART00000123745 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A 0.036±0.00 N/A N/A N/A N/A N/A
ENSDART00000144894 N/A N/A N/A 11.945±0.00 N/A N/A 0.075±0.00 0.279±0.00 N/A N/A 0.130±0.00 N/A N/A N/A
ENSDART00000154646 N/A N/A N/A N/A N/A N/A 0.096±0.05 0.165±0.00 0.025±0.00 N/A N/A N/A N/A N/A
ENSDARG00000097921 ENSDART00000156616 N/A N/A N/A N/A N/A N/A N/A 4.248±2.91 0.267±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000067727 ENSDART00000097543 N/A N/A N/A N/A N/A N/A 0.215±0.08 0.256±0.00 0.039±0.00 N/A 0.406±0.00 N/A N/A N/A

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