C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007KY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH2 UCNEbase 9606 X:85876492-85969116
GeneTranscriptPositionBiotype
ENSG00000199051 (MIR361)
microRNA 361 		ENST00000362181 (MIR361-201) 85903611-85903722 miRNA
CIL_0007KY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH2 UCNEbase 9606 X:85969117-86193073
GeneTranscriptPositionBiotype
ENSG00000188419 (CHM)
choroideremia (Rab escort protein 1) 		ENST00000357749 (CHM-001) 85861180-86047562 protein_coding
ENST00000467744 (CHM-004) 85861181-86047305 processed_transcript
ENST00000483950 (CHM-003) 86026958-86047561 processed_transcript
ENST00000487515 (CHM-005) 85978656-85981809 processed_transcript
ENST00000615443 (CHM-002) 85969087-86047539 protein_coding
ENSG00000215093 (EEF1A1P29)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 29 		ENST00000416082 (EEF1A1P29-001) 86160264-86161359 processed_pseudogene
ENSG00000225536 (STIP1P3)
stress-induced phosphoprotein 1 pseudogene 3 		ENST00000394563 (STIP1P3-001) 86084716-86086339 processed_pseudogene
CIL_0007KY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH2 UCNEbase 9606 X:86193074-86819937
GeneTranscriptPositionBiotype
ENSG00000223772 (GEMIN8P3)
gem (nuclear organelle) associated protein 8 pseudogene 3 		ENST00000445417 (GEMIN8P3-001) 86304367-86305086 processed_pseudogene
CIL_0007KY_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH2 UCNEbase 10090 X:113051201-113824468
GeneTranscriptPositionBiotype
ENSMUSG00000025531 (Chm)
choroidermia 		ENSMUST00000026607 (Chm-001) 113040593-113185517 protein_coding
ENSMUST00000113388 (Chm-002) 113040595-113185517 protein_coding
ENSMUST00000133469 (Chm-004) 113116289-113185509 processed_transcript
ENSMUST00000135821 (Chm-003) 113062531-113185509 processed_transcript
ENSMUST00000153417 (Chm-005) 113043174-113047579 processed_transcript
ENSMUSG00000025592 (Dach2)
dachshund 2 (Drosophila) 		ENSMUST00000067219 (Dach2-002) 113298257-113835893 protein_coding
ENSMUST00000113378 (Dach2-004) 113297576-113835578 protein_coding
ENSMUST00000113379 (Dach2-006) 113297522-113831907 protein_coding
ENSMUST00000113380 (Dach2-005) 113297510-113836386 protein_coding
ENSMUST00000113382 (Dach2-003) 113298257-113834256 protein_coding
ENSMUST00000123974 (Dach2-008) 113724349-113834256 processed_transcript
ENSMUST00000141552 (Dach2-007) 113298634-113556299 processed_transcript
ENSMUST00000146539 (Dach2-001) 113298252-113755834 retained_intron
CIL_0007KY_0005 (Click to Hide/Show)
Source ID Type Tax ID Position
DACH2 UCNEbase 7955 21:33341197-33747601
GeneTranscriptPositionBiotype
ENSDARG00000003845 (chm)
choroideremia (Rab escort protein 1) 		ENSDART00000005479 (chm-001) 33652581-33759726 protein_coding
ENSDARG00000010132 (dacha)
dachshund a 		ENSDART00000023038 (dacha-001) 33330273-33624083 protein_coding
ENSDART00000136081 (dacha-002) 33396277-33502191 processed_transcript

Danio rerio Ensembl (Zv9)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KY_0001ENSG00000199051ENST00000362181CIL_0007KY_0002ENSG00000188419ENST00000357749ENST00000467744ENST00000483950ENST00000487515ENST00000615443ENSG00000215093ENST00000416082ENSG00000225536ENST00000394563CIL_0007KY_0003ENSG00000223772ENST00000445417CIL_0007KY_0004ENSMUSG00000025531ENSMUST00000026607ENSMUST00000113388ENSMUST00000133469ENSMUST00000135821ENSMUST00000153417ENSMUSG00000025592ENSMUST00000067219ENSMUST00000113378ENSMUST00000113379ENSMUST00000113380ENSMUST00000113382ENSMUST00000123974ENSMUST00000141552ENSMUST00000146539CIL_0007KY_0005ENSDARG00000003845ENSDART00000005479ENSDARG00000010132ENSDART00000023038ENSDART00000136081
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KY_0001ENSG00000199051ENST00000362181CIL_0007KY_0002ENSG00000188419ENST00000357749ENST00000467744ENST00000615443ENSG00000215093ENST00000416082ENSG00000225536ENST00000394563CIL_0007KY_0003ENSG00000223772ENST00000445417CIL_0007KY_0004ENSMUSG00000025531ENSMUST00000026607ENSMUST00000113388ENSMUST00000135821ENSMUST00000153417ENSMUSG00000025592ENSMUST00000067219ENSMUST00000113378ENSMUST00000113379ENSMUST00000113380ENSMUST00000113382ENSMUST00000123974ENSMUST00000141552CIL_0007KY_0005ENSDARG00000003845ENSDART00000005479ENSDARG00000010132ENSDART00000023038
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000199051 ENST00000362181 N/A N/A N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188419 ENST00000357749 1.961±0.00 1.566±0.00 2.437±0.00 4.038±0.06 2.999±1.16 1.966±0.56 1.202±0.83 1.977±0.95 1.352±0.69 1.136±0.27 1.623±0.00 1.539±0.30 1.251±0.01 1.632±0.00
ENST00000467744 N/A 1.100±0.00 3.385±0.00 N/A 0.678±0.00 0.576±0.00 N/A 2.573±0.00 1.030±0.00 0.972±0.00 N/A 1.996±0.00 0.589±0.10 0.540±0.00
ENST00000483950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.574±0.18
ENSG00000215093 ENST00000416082 N/A 0.765±0.00 N/A N/A 0.838±0.00 N/A N/A 0.434±0.00 0.109±0.00 0.346±0.00 N/A 0.171±0.05 0.039±0.00 0.304±0.00
ENSG00000225536 ENST00000394563 0.009±0.00 N/A N/A 0.022±0.00 0.019±0.00 0.050±0.00 0.010±0.00 0.011±0.00 N/A N/A 0.045±0.00 N/A N/A 0.018±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000223772 ENST00000445417 N/A N/A 0.772±0.00 N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025531 ENSMUST00000026607 0.477±0.14 1.316±0.00 1.780±0.52 2.311±1.08 0.613±0.33 0.884±0.06 0.917±0.35 1.004±0.43 0.980±0.38 1.765±0.07 3.128±0.36 3.095±1.79 2.816±0.88 0.080±0.02
ENSMUST00000113388 0.434±0.28 0.959±0.46 N/A N/A 0.649±0.16 1.379±0.50 0.165±0.00 0.801±0.06 0.816±0.11 2.252±0.00 0.614±0.00 0.580±0.30 N/A 0.180±0.09
ENSMUST00000133469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135821 0.350±0.03 1.116±0.52 N/A 0.356±0.00 0.259±0.08 N/A N/A 0.185±0.00 0.207±0.08 0.405±0.09 N/A 0.401±0.12 N/A 0.080±0.01
ENSMUST00000153417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.702±0.00 N/A N/A
ENSMUSG00000025592 ENSMUST00000067219 0.086±0.04 0.057±0.02 0.165±0.00 0.424±0.22 0.060±0.00 0.178±0.06 N/A N/A 0.049±0.03 0.064±0.00 N/A 0.207±0.13 0.021±0.00 0.029±0.00
ENSMUST00000113378 N/A 0.043±0.00 N/A N/A 0.101±0.06 0.097±0.04 N/A 0.019±0.00 0.036±0.01 0.042±0.00 N/A 0.238±0.10 N/A 0.061±0.02
ENSMUST00000113379 N/A N/A N/A N/A 0.055±0.02 N/A N/A N/A 0.057±0.03 N/A N/A 0.198±0.26 0.011±0.00 N/A
ENSMUST00000113380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A
ENSMUST00000113382 0.039±0.00 N/A 0.082±0.00 0.100±0.09 0.045±0.02 0.095±0.00 N/A 0.015±0.00 0.020±0.01 N/A N/A 0.014±0.00 0.007±0.00 0.017±0.00
ENSMUST00000123974 N/A N/A N/A 0.009±0.00 N/A N/A N/A 0.013±0.00 N/A N/A 0.130±0.04 0.028±0.01 0.003±0.00 0.010±0.00
ENSMUST00000141552 0.163±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.354±0.00 N/A N/A
ENSMUST00000146539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003845 ENSDART00000005479 N/A N/A N/A 9.991±3.46 N/A N/A 8.059±4.18 10.687±3.29 0.485±0.00 N/A 3.415±0.00 N/A N/A N/A
ENSDARG00000010132 ENSDART00000023038 N/A N/A N/A 7.966±0.00 N/A N/A 13.526±9.14 0.280±0.00 0.013±0.00 N/A 3.419±0.00 N/A N/A N/A
ENSDART00000136081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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