Notice (8): Undefined index: CIL_0007LW_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000124486' => 'ubiquitin specific peptidase 9, X-linked',
'ENSG00000147044' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSG00000188937' => 'nyctalopin',
'ENSG00000199564' => 'RNA, 5S ribosomal pseudogene 502',
'ENSG00000215301' => 'DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked',
'ENSG00000223714' => null,
'ENSG00000225238' => null,
'ENSG00000226641' => null,
'ENSG00000233033' => 'CASK antisense RNA 1',
'ENSG00000238426' => 'Y RNA',
'ENSG00000264573' => 'RNA, 7SL, cytoplasmic 15, pseudogene',
'ENSG00000269941' => null,
'ENSMUSG00000000787' => 'DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked',
'ENSMUSG00000031010' => 'ubiquitin specific peptidase 9, X chromosome',
'ENSMUSG00000031012' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSMUSG00000051228' => 'nyctalopin',
'ENSMUSG00000065813' => 'nuclear encoded rRNA 5S 3',
'ENSMUSG00000080818' => 'predicted gene 9434',
'ENSMUSG00000080914' => 'predicted gene 7129',
'ENSMUSG00000081255' => 'predicted gene 5380',
'ENSMUSG00000081597' => 'predicted gene 14506',
'ENSMUSG00000082090' => 'predicted gene 16481',
'ENSMUSG00000083364' => 'LLP homolog, pseudogene 2',
'ENSMUSG00000084349' => 'ribosomal protein L3, pseudogene 1',
'ENSMUSG00000094259' => 'predicted gene 14536',
'ENSMUSG00000094574' => 'predicted gene 15027',
'ENSMUSG00000100714' => 'RIKEN cDNA 2010308F09 gene',
'ENSDARG00000013708' => 'ubiquitin specific peptidase 9',
'ENSDARG00000014867' => 'ribosomal protein L8',
'ENSDARG00000020573' => 'DEAD (Asp-Glu-Ala-Asp) box polypeptide 3'
),
'gene_name_arr' => array(
'ENSG00000124486' => 'USP9X',
'ENSG00000147044' => 'CASK',
'ENSG00000188937' => 'NYX',
'ENSG00000199564' => 'RNA5SP502',
'ENSG00000215301' => 'DDX3X',
'ENSG00000223714' => 'RP5-1172N10.2',
'ENSG00000225238' => 'RP1-169I5.4',
'ENSG00000226641' => 'RP13-13A3.1',
'ENSG00000233033' => 'CASK-AS1',
'ENSG00000238426' => 'Y_RNA',
'ENSG00000264573' => 'RN7SL15P',
'ENSG00000269941' => 'RP5-1172N10.4',
'ENSMUSG00000000787' => 'Ddx3x',
'ENSMUSG00000031010' => 'Usp9x',
'ENSMUSG00000031012' => 'Cask',
'ENSMUSG00000051228' => 'Nyx',
'ENSMUSG00000065813' => 'n-R5s3',
'ENSMUSG00000080818' => 'Gm9434',
'ENSMUSG00000080914' => 'Gm7129',
'ENSMUSG00000081255' => 'Gm5380',
'ENSMUSG00000081597' => 'Gm14506',
'ENSMUSG00000082090' => 'Gm16481',
'ENSMUSG00000083364' => 'Llph-ps2',
'ENSMUSG00000084349' => 'Rpl3-ps1',
'ENSMUSG00000094259' => 'Gm14536',
'ENSMUSG00000094574' => 'Gm15027',
'ENSMUSG00000100714' => 'RP23-158L19.7',
'ENSDARG00000013708' => 'usp9',
'ENSDARG00000014867' => 'rpl8',
'ENSDARG00000020573' => 'ddx3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 54 => 'Brain',
(int) 85 => 'Breast',
(int) 107 => 'Colon',
(int) 125 => 'Heart',
(int) 148 => 'Kidney',
(int) 178 => 'Liver',
(int) 206 => 'Lung',
(int) 228 => 'Muscle',
(int) 248 => 'Ovary',
(int) 282 => 'Placenta',
(int) 313 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 92,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000324545' => array(
'start' => '41085635',
'end' => '41236579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-003'
),
'ENST00000378308' => array(
'start' => '41085635',
'end' => '41232597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-001'
),
'ENST00000462850' => array(
'start' => '41195905',
'end' => '41198571',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP9X-009'
),
'ENST00000463829' => array(
'start' => '41188066',
'end' => '41189922',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-007'
),
'ENST00000465386' => array(
'start' => '41183994',
'end' => '41184740',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-008'
),
'ENST00000467173' => array(
'start' => '41167145',
'end' => '41168242',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-002'
),
'ENST00000485180' => array(
'start' => '41228983',
'end' => '41229896',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-010'
),
'ENST00000487625' => array(
'start' => '41205059',
'end' => '41210654',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-004'
),
'ENST00000378154' => array(
'start' => '41559497',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-006'
),
'ENST00000378158' => array(
'start' => '41519653',
'end' => '41923339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-001'
),
'ENST00000378163' => array(
'start' => '41519265',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-007'
),
'ENST00000378166' => array(
'start' => '41520090',
'end' => '41923015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-005'
),
'ENST00000378168' => array(
'start' => '41519549',
'end' => '41561627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-012'
),
'ENST00000378179' => array(
'start' => '41519527',
'end' => '41589951',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-002'
),
'ENST00000421587' => array(
'start' => '41514934',
'end' => '41923012',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-004'
),
'ENST00000442742' => array(
'start' => '41520336',
'end' => '41923007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-013'
),
'ENST00000468986' => array(
'start' => '41743613',
'end' => '41923015',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-008'
),
'ENST00000469265' => array(
'start' => '41635728',
'end' => '41665431',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-011'
),
'ENST00000472704' => array(
'start' => '41552605',
'end' => '41578453',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-003'
),
'ENST00000477823' => array(
'start' => '41786810',
'end' => '41922982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-009'
),
'ENST00000486402' => array(
'start' => '41660101',
'end' => '41665832',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-010'
),
'ENST00000342595' => array(
'start' => '41447434',
'end' => '41475710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-001'
),
'ENST00000378220' => array(
'start' => '41447460',
'end' => '41475652',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-002'
),
'ENST00000486842' => array(
'start' => '41472181',
'end' => '41473709',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NYX-003'
),
'ENST00000362694' => array(
'start' => '41292798',
'end' => '41292916',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP502-201'
),
'ENST00000399959' => array(
'start' => '41333398',
'end' => '41350274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-001'
),
'ENST00000441189' => array(
'start' => '41334162',
'end' => '41348259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-005'
),
'ENST00000457138' => array(
'start' => '41333398',
'end' => '41350269',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-201'
),
'ENST00000478993' => array(
'start' => '41333398',
'end' => '41364472',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-002'
),
'ENST00000480592' => array(
'start' => '41334174',
'end' => '41338509',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-003'
),
'ENST00000542215' => array(
'start' => '41334591',
'end' => '41346551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-004'
),
'ENST00000610559' => array(
'start' => '41333348',
'end' => '41339083',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-010'
),
'ENST00000611546' => array(
'start' => '41334670',
'end' => '41342520',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-008'
),
'ENST00000611968' => array(
'start' => '41346566',
'end' => '41348138',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-012'
),
'ENST00000615313' => array(
'start' => '41334612',
'end' => '41342542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-007'
),
'ENST00000615742' => array(
'start' => '41334162',
'end' => '41342506',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-011'
),
'ENST00000616050' => array(
'start' => '41346361',
'end' => '41358000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-013'
),
'ENST00000622198' => array(
'start' => '41334670',
'end' => '41342518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-009'
),
'ENST00000622373' => array(
'start' => '41334610',
'end' => '41336738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DDX3X-006'
),
'ENST00000452501' => array(
'start' => '41275739',
'end' => '41276778',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1172N10.2-001'
),
'ENST00000451718' => array(
'start' => '41472264',
'end' => '41472653',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-169I5.4-001'
),
'ENST00000395664' => array(
'start' => '41322601',
'end' => '41323111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-13A3.1-001'
),
'ENST00000451126' => array(
'start' => '41520036',
'end' => '41522336',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CASK-AS1-001'
),
'ENST00000459189' => array(
'start' => '41316488',
'end' => '41316589',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-835'
),
'ENST00000582825' => array(
'start' => '41345576',
'end' => '41345876',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL15P-201'
),
'ENST00000602481' => array(
'start' => '41233633',
'end' => '41234283',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP5-1172N10.4-001'
),
'ENSMUST00000000804' => array(
'start' => '13280970',
'end' => '13294052',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ddx3x-001'
),
'ENSMUST00000123096' => array(
'start' => '13287284',
'end' => '13288852',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-004'
),
'ENSMUST00000149639' => array(
'start' => '13287785',
'end' => '13289915',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-005'
),
'ENSMUST00000153611' => array(
'start' => '13281032',
'end' => '13287872',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-003'
),
'ENSMUST00000153851' => array(
'start' => '13281022',
'end' => '13292022',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ddx3x-002'
),
'ENSMUST00000089302' => array(
'start' => '13071514',
'end' => '13173328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-001'
),
'ENSMUST00000124097' => array(
'start' => '13129327',
'end' => '13133782',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-003'
),
'ENSMUST00000133997' => array(
'start' => '13160857',
'end' => '13169898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-005'
),
'ENSMUST00000139764' => array(
'start' => '13071514',
'end' => '13122161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-004'
),
'ENSMUST00000149021' => array(
'start' => '13113684',
'end' => '13123233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-007'
),
'ENSMUST00000169594' => array(
'start' => '13071498',
'end' => '13123449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-002'
),
'ENSMUST00000174762' => array(
'start' => '13129060',
'end' => '13132570',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-006'
),
'ENSMUST00000033321' => array(
'start' => '13521331',
'end' => '13846556',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-002'
),
'ENSMUST00000115435' => array(
'start' => '13521782',
'end' => '13526768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-005'
),
'ENSMUST00000115436' => array(
'start' => '13517080',
'end' => '13846541',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-201'
),
'ENSMUST00000115438' => array(
'start' => '13517080',
'end' => '13846578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-001'
),
'ENSMUST00000124710' => array(
'start' => '13626280',
'end' => '13846088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-006'
),
'ENSMUST00000128012' => array(
'start' => '13571103',
'end' => '13677594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-011'
),
'ENSMUST00000128095' => array(
'start' => '13522080',
'end' => '13537669',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-004'
),
'ENSMUST00000132240' => array(
'start' => '13714731',
'end' => '13851367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-009'
),
'ENSMUST00000139735' => array(
'start' => '13533340',
'end' => '13559331',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-008'
),
'ENSMUST00000152358' => array(
'start' => '13554584',
'end' => '13846578',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cask-010'
),
'ENSMUST00000155989' => array(
'start' => '13846090',
'end' => '13846735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-007'
),
'ENSMUST00000156096' => array(
'start' => '13517080',
'end' => '13786030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-003'
),
'ENSMUST00000050434' => array(
'start' => '13466110',
'end' => '13489313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nyx-001'
),
'ENSMUST00000083879' => array(
'start' => '13215698',
'end' => '13215809',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s3-201'
),
'ENSMUST00000118975' => array(
'start' => '13377866',
'end' => '13378678',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9434-001'
),
'ENSMUST00000117402' => array(
'start' => '13326023',
'end' => '13327019',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm7129-001'
),
'ENSMUST00000119296' => array(
'start' => '13302285',
'end' => '13304420',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5380-001'
),
'ENSMUST00000121165' => array(
'start' => '13490498',
'end' => '13491033',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14506-001'
),
'ENSMUST00000119074' => array(
'start' => '13238327',
'end' => '13239553',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16481-001'
),
'ENSMUST00000122000' => array(
'start' => '13218210',
'end' => '13218602',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Llph-ps2-001'
),
'ENSMUST00000120557' => array(
'start' => '13202571',
'end' => '13203780',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl3-ps1-001'
),
'ENSMUST00000118324' => array(
'start' => '13189538',
'end' => '13189675',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14536-001'
),
'ENSMUST00000120922' => array(
'start' => '13179443',
'end' => '13179580',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm15027-001'
),
'ENSMUST00000186827' => array(
'start' => '13234641',
'end' => '13236283',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-002'
),
'ENSMUST00000186931' => array(
'start' => '13234684',
'end' => '13247736',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-001'
),
'ENSDART00000025635' => array(
'start' => '34300519',
'end' => '34352703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-201'
),
'ENSDART00000122803' => array(
'start' => '34300519',
'end' => '34354342',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-202'
),
'ENSDART00000135384' => array(
'start' => '34294638',
'end' => '34354348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-001'
),
'ENSDART00000006948' => array(
'start' => '34356418',
'end' => '34362256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-201'
),
'ENSDART00000132973' => array(
'start' => '34358180',
'end' => '34362252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'rpl8-003'
),
'ENSDART00000140039' => array(
'start' => '34356412',
'end' => '34363095',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-001'
),
'ENSDART00000147265' => array(
'start' => '34358520',
'end' => '34363008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-002'
),
'ENSDART00000006867' => array(
'start' => '34367809',
'end' => '34388046',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-001'
),
'ENSDART00000140064' => array(
'start' => '34373619',
'end' => '34379577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
'ENSG00000124486' => array(
[maximum depth reached]
),
'ENSG00000147044' => array(
[maximum depth reached]
),
'ENSG00000215301' => array(
[maximum depth reached]
),
'ENSG00000223714' => array(
[maximum depth reached]
),
'ENSG00000226641' => array(
[maximum depth reached]
),
'ENSG00000233033' => array(
[maximum depth reached]
),
'ENSG00000238426' => array(
[maximum depth reached]
),
'ENSG00000264573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Ovary',
(int) 48 => 'Bladder',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Heart',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Kidney',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Testis',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Colon',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Breast',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis'
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000000787' => array(
[maximum depth reached]
),
'ENSMUSG00000031010' => array(
[maximum depth reached]
),
'ENSMUSG00000031012' => array(
[maximum depth reached]
),
'ENSMUSG00000051228' => array(
[maximum depth reached]
),
'ENSMUSG00000080818' => array(
[maximum depth reached]
),
'ENSMUSG00000080914' => array(
[maximum depth reached]
),
'ENSMUSG00000081255' => array(
[maximum depth reached]
),
'ENSMUSG00000081597' => array(
[maximum depth reached]
),
'ENSMUSG00000082090' => array(
[maximum depth reached]
),
'ENSMUSG00000083364' => array(
[maximum depth reached]
),
'ENSMUSG00000084349' => array(
[maximum depth reached]
),
'ENSMUSG00000100714' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Colon',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Placenta',
(int) 38 => 'Adrenal',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Bladder',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Testis',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Liver',
(int) 115 => 'Ovary',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Bladder',
(int) 131 => 'Brain',
(int) 132 => 'Breast',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Liver',
(int) 146 => 'Lung',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Kidney',
(int) 157 => 'Liver',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Bladder',
(int) 164 => 'Brain',
(int) 165 => 'Breast',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Bladder',
(int) 189 => 'Brain',
(int) 190 => 'Colon',
(int) 191 => 'Kidney',
(int) 192 => 'Liver',
(int) 193 => 'Lung',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Brain',
(int) 197 => 'Kidney',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta'
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
'ENSDARG00000014867' => array(
[maximum depth reached]
),
'ENSDARG00000020573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Brain',
(int) 19 => 'Kidney',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000124486' => 'ubiquitin specific peptidase 9, X-linked',
'ENSG00000147044' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSG00000188937' => 'nyctalopin',
'ENSG00000199564' => 'RNA, 5S ribosomal pseudogene 502',
'ENSG00000215301' => 'DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked',
'ENSG00000223714' => null,
'ENSG00000225238' => null,
'ENSG00000226641' => null,
'ENSG00000233033' => 'CASK antisense RNA 1',
'ENSG00000238426' => 'Y RNA',
'ENSG00000264573' => 'RNA, 7SL, cytoplasmic 15, pseudogene',
'ENSG00000269941' => null,
'ENSMUSG00000000787' => 'DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked',
'ENSMUSG00000031010' => 'ubiquitin specific peptidase 9, X chromosome',
'ENSMUSG00000031012' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSMUSG00000051228' => 'nyctalopin',
'ENSMUSG00000065813' => 'nuclear encoded rRNA 5S 3',
'ENSMUSG00000080818' => 'predicted gene 9434',
'ENSMUSG00000080914' => 'predicted gene 7129',
'ENSMUSG00000081255' => 'predicted gene 5380',
'ENSMUSG00000081597' => 'predicted gene 14506',
'ENSMUSG00000082090' => 'predicted gene 16481',
'ENSMUSG00000083364' => 'LLP homolog, pseudogene 2',
'ENSMUSG00000084349' => 'ribosomal protein L3, pseudogene 1',
'ENSMUSG00000094259' => 'predicted gene 14536',
'ENSMUSG00000094574' => 'predicted gene 15027',
'ENSMUSG00000100714' => 'RIKEN cDNA 2010308F09 gene',
'ENSDARG00000013708' => 'ubiquitin specific peptidase 9',
'ENSDARG00000014867' => 'ribosomal protein L8',
'ENSDARG00000020573' => 'DEAD (Asp-Glu-Ala-Asp) box polypeptide 3'
)
$gene_name_arr = array(
'ENSG00000124486' => 'USP9X',
'ENSG00000147044' => 'CASK',
'ENSG00000188937' => 'NYX',
'ENSG00000199564' => 'RNA5SP502',
'ENSG00000215301' => 'DDX3X',
'ENSG00000223714' => 'RP5-1172N10.2',
'ENSG00000225238' => 'RP1-169I5.4',
'ENSG00000226641' => 'RP13-13A3.1',
'ENSG00000233033' => 'CASK-AS1',
'ENSG00000238426' => 'Y_RNA',
'ENSG00000264573' => 'RN7SL15P',
'ENSG00000269941' => 'RP5-1172N10.4',
'ENSMUSG00000000787' => 'Ddx3x',
'ENSMUSG00000031010' => 'Usp9x',
'ENSMUSG00000031012' => 'Cask',
'ENSMUSG00000051228' => 'Nyx',
'ENSMUSG00000065813' => 'n-R5s3',
'ENSMUSG00000080818' => 'Gm9434',
'ENSMUSG00000080914' => 'Gm7129',
'ENSMUSG00000081255' => 'Gm5380',
'ENSMUSG00000081597' => 'Gm14506',
'ENSMUSG00000082090' => 'Gm16481',
'ENSMUSG00000083364' => 'Llph-ps2',
'ENSMUSG00000084349' => 'Rpl3-ps1',
'ENSMUSG00000094259' => 'Gm14536',
'ENSMUSG00000094574' => 'Gm15027',
'ENSMUSG00000100714' => 'RP23-158L19.7',
'ENSDARG00000013708' => 'usp9',
'ENSDARG00000014867' => 'rpl8',
'ENSDARG00000020573' => 'ddx3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '41232520',
'seq_end' => '41520330',
'region_length' => '287810',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0002',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '13169486',
'seq_end' => '13522078',
'region_length' => '352592',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '59575774',
'seq_end' => '59576043',
'region_length' => '269',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '34353947',
'seq_end' => '34387450',
'region_length' => '33503',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 54 => 'Brain',
(int) 85 => 'Breast',
(int) 107 => 'Colon',
(int) 125 => 'Heart',
(int) 148 => 'Kidney',
(int) 178 => 'Liver',
(int) 206 => 'Lung',
(int) 228 => 'Muscle',
(int) 248 => 'Ovary',
(int) 282 => 'Placenta',
(int) 313 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 92
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000324545' => array(
'start' => '41085635',
'end' => '41236579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-003'
),
'ENST00000378308' => array(
'start' => '41085635',
'end' => '41232597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-001'
),
'ENST00000462850' => array(
'start' => '41195905',
'end' => '41198571',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP9X-009'
),
'ENST00000463829' => array(
'start' => '41188066',
'end' => '41189922',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-007'
),
'ENST00000465386' => array(
'start' => '41183994',
'end' => '41184740',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-008'
),
'ENST00000467173' => array(
'start' => '41167145',
'end' => '41168242',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-002'
),
'ENST00000485180' => array(
'start' => '41228983',
'end' => '41229896',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-010'
),
'ENST00000487625' => array(
'start' => '41205059',
'end' => '41210654',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-004'
),
'ENST00000378154' => array(
'start' => '41559497',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-006'
),
'ENST00000378158' => array(
'start' => '41519653',
'end' => '41923339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-001'
),
'ENST00000378163' => array(
'start' => '41519265',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-007'
),
'ENST00000378166' => array(
'start' => '41520090',
'end' => '41923015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-005'
),
'ENST00000378168' => array(
'start' => '41519549',
'end' => '41561627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-012'
),
'ENST00000378179' => array(
'start' => '41519527',
'end' => '41589951',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-002'
),
'ENST00000421587' => array(
'start' => '41514934',
'end' => '41923012',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-004'
),
'ENST00000442742' => array(
'start' => '41520336',
'end' => '41923007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-013'
),
'ENST00000468986' => array(
'start' => '41743613',
'end' => '41923015',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-008'
),
'ENST00000469265' => array(
'start' => '41635728',
'end' => '41665431',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-011'
),
'ENST00000472704' => array(
'start' => '41552605',
'end' => '41578453',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-003'
),
'ENST00000477823' => array(
'start' => '41786810',
'end' => '41922982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-009'
),
'ENST00000486402' => array(
'start' => '41660101',
'end' => '41665832',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-010'
),
'ENST00000342595' => array(
'start' => '41447434',
'end' => '41475710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-001'
),
'ENST00000378220' => array(
'start' => '41447460',
'end' => '41475652',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-002'
),
'ENST00000486842' => array(
'start' => '41472181',
'end' => '41473709',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NYX-003'
),
'ENST00000362694' => array(
'start' => '41292798',
'end' => '41292916',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP502-201'
),
'ENST00000399959' => array(
'start' => '41333398',
'end' => '41350274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-001'
),
'ENST00000441189' => array(
'start' => '41334162',
'end' => '41348259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-005'
),
'ENST00000457138' => array(
'start' => '41333398',
'end' => '41350269',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-201'
),
'ENST00000478993' => array(
'start' => '41333398',
'end' => '41364472',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-002'
),
'ENST00000480592' => array(
'start' => '41334174',
'end' => '41338509',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-003'
),
'ENST00000542215' => array(
'start' => '41334591',
'end' => '41346551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-004'
),
'ENST00000610559' => array(
'start' => '41333348',
'end' => '41339083',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-010'
),
'ENST00000611546' => array(
'start' => '41334670',
'end' => '41342520',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-008'
),
'ENST00000611968' => array(
'start' => '41346566',
'end' => '41348138',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-012'
),
'ENST00000615313' => array(
'start' => '41334612',
'end' => '41342542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-007'
),
'ENST00000615742' => array(
'start' => '41334162',
'end' => '41342506',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-011'
),
'ENST00000616050' => array(
'start' => '41346361',
'end' => '41358000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-013'
),
'ENST00000622198' => array(
'start' => '41334670',
'end' => '41342518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-009'
),
'ENST00000622373' => array(
'start' => '41334610',
'end' => '41336738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DDX3X-006'
),
'ENST00000452501' => array(
'start' => '41275739',
'end' => '41276778',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1172N10.2-001'
),
'ENST00000451718' => array(
'start' => '41472264',
'end' => '41472653',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-169I5.4-001'
),
'ENST00000395664' => array(
'start' => '41322601',
'end' => '41323111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-13A3.1-001'
),
'ENST00000451126' => array(
'start' => '41520036',
'end' => '41522336',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CASK-AS1-001'
),
'ENST00000459189' => array(
'start' => '41316488',
'end' => '41316589',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-835'
),
'ENST00000582825' => array(
'start' => '41345576',
'end' => '41345876',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL15P-201'
),
'ENST00000602481' => array(
'start' => '41233633',
'end' => '41234283',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP5-1172N10.4-001'
),
'ENSMUST00000000804' => array(
'start' => '13280970',
'end' => '13294052',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ddx3x-001'
),
'ENSMUST00000123096' => array(
'start' => '13287284',
'end' => '13288852',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-004'
),
'ENSMUST00000149639' => array(
'start' => '13287785',
'end' => '13289915',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-005'
),
'ENSMUST00000153611' => array(
'start' => '13281032',
'end' => '13287872',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-003'
),
'ENSMUST00000153851' => array(
'start' => '13281022',
'end' => '13292022',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ddx3x-002'
),
'ENSMUST00000089302' => array(
'start' => '13071514',
'end' => '13173328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-001'
),
'ENSMUST00000124097' => array(
'start' => '13129327',
'end' => '13133782',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-003'
),
'ENSMUST00000133997' => array(
'start' => '13160857',
'end' => '13169898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-005'
),
'ENSMUST00000139764' => array(
'start' => '13071514',
'end' => '13122161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-004'
),
'ENSMUST00000149021' => array(
'start' => '13113684',
'end' => '13123233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-007'
),
'ENSMUST00000169594' => array(
'start' => '13071498',
'end' => '13123449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-002'
),
'ENSMUST00000174762' => array(
'start' => '13129060',
'end' => '13132570',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-006'
),
'ENSMUST00000033321' => array(
'start' => '13521331',
'end' => '13846556',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-002'
),
'ENSMUST00000115435' => array(
'start' => '13521782',
'end' => '13526768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-005'
),
'ENSMUST00000115436' => array(
'start' => '13517080',
'end' => '13846541',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-201'
),
'ENSMUST00000115438' => array(
'start' => '13517080',
'end' => '13846578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-001'
),
'ENSMUST00000124710' => array(
'start' => '13626280',
'end' => '13846088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-006'
),
'ENSMUST00000128012' => array(
'start' => '13571103',
'end' => '13677594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-011'
),
'ENSMUST00000128095' => array(
'start' => '13522080',
'end' => '13537669',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-004'
),
'ENSMUST00000132240' => array(
'start' => '13714731',
'end' => '13851367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-009'
),
'ENSMUST00000139735' => array(
'start' => '13533340',
'end' => '13559331',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-008'
),
'ENSMUST00000152358' => array(
'start' => '13554584',
'end' => '13846578',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cask-010'
),
'ENSMUST00000155989' => array(
'start' => '13846090',
'end' => '13846735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-007'
),
'ENSMUST00000156096' => array(
'start' => '13517080',
'end' => '13786030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-003'
),
'ENSMUST00000050434' => array(
'start' => '13466110',
'end' => '13489313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nyx-001'
),
'ENSMUST00000083879' => array(
'start' => '13215698',
'end' => '13215809',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s3-201'
),
'ENSMUST00000118975' => array(
'start' => '13377866',
'end' => '13378678',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9434-001'
),
'ENSMUST00000117402' => array(
'start' => '13326023',
'end' => '13327019',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm7129-001'
),
'ENSMUST00000119296' => array(
'start' => '13302285',
'end' => '13304420',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5380-001'
),
'ENSMUST00000121165' => array(
'start' => '13490498',
'end' => '13491033',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14506-001'
),
'ENSMUST00000119074' => array(
'start' => '13238327',
'end' => '13239553',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16481-001'
),
'ENSMUST00000122000' => array(
'start' => '13218210',
'end' => '13218602',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Llph-ps2-001'
),
'ENSMUST00000120557' => array(
'start' => '13202571',
'end' => '13203780',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl3-ps1-001'
),
'ENSMUST00000118324' => array(
'start' => '13189538',
'end' => '13189675',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14536-001'
),
'ENSMUST00000120922' => array(
'start' => '13179443',
'end' => '13179580',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm15027-001'
),
'ENSMUST00000186827' => array(
'start' => '13234641',
'end' => '13236283',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-002'
),
'ENSMUST00000186931' => array(
'start' => '13234684',
'end' => '13247736',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-001'
),
'ENSDART00000025635' => array(
'start' => '34300519',
'end' => '34352703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-201'
),
'ENSDART00000122803' => array(
'start' => '34300519',
'end' => '34354342',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-202'
),
'ENSDART00000135384' => array(
'start' => '34294638',
'end' => '34354348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-001'
),
'ENSDART00000006948' => array(
'start' => '34356418',
'end' => '34362256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-201'
),
'ENSDART00000132973' => array(
'start' => '34358180',
'end' => '34362252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'rpl8-003'
),
'ENSDART00000140039' => array(
'start' => '34356412',
'end' => '34363095',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-001'
),
'ENSDART00000147265' => array(
'start' => '34358520',
'end' => '34363008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-002'
),
'ENSDART00000006867' => array(
'start' => '34367809',
'end' => '34388046',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-001'
),
'ENSDART00000140064' => array(
'start' => '34373619',
'end' => '34379577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
'ENSG00000124486' => array(
[maximum depth reached]
),
'ENSG00000147044' => array(
[maximum depth reached]
),
'ENSG00000215301' => array(
[maximum depth reached]
),
'ENSG00000223714' => array(
[maximum depth reached]
),
'ENSG00000226641' => array(
[maximum depth reached]
),
'ENSG00000233033' => array(
[maximum depth reached]
),
'ENSG00000238426' => array(
[maximum depth reached]
),
'ENSG00000264573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Ovary',
(int) 48 => 'Bladder',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Heart',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Kidney',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Testis',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Colon',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Breast',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis'
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000000787' => array(
[maximum depth reached]
),
'ENSMUSG00000031010' => array(
[maximum depth reached]
),
'ENSMUSG00000031012' => array(
[maximum depth reached]
),
'ENSMUSG00000051228' => array(
[maximum depth reached]
),
'ENSMUSG00000080818' => array(
[maximum depth reached]
),
'ENSMUSG00000080914' => array(
[maximum depth reached]
),
'ENSMUSG00000081255' => array(
[maximum depth reached]
),
'ENSMUSG00000081597' => array(
[maximum depth reached]
),
'ENSMUSG00000082090' => array(
[maximum depth reached]
),
'ENSMUSG00000083364' => array(
[maximum depth reached]
),
'ENSMUSG00000084349' => array(
[maximum depth reached]
),
'ENSMUSG00000100714' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Colon',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Placenta',
(int) 38 => 'Adrenal',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Bladder',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Testis',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Liver',
(int) 115 => 'Ovary',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Bladder',
(int) 131 => 'Brain',
(int) 132 => 'Breast',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Liver',
(int) 146 => 'Lung',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Kidney',
(int) 157 => 'Liver',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Bladder',
(int) 164 => 'Brain',
(int) 165 => 'Breast',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Bladder',
(int) 189 => 'Brain',
(int) 190 => 'Colon',
(int) 191 => 'Kidney',
(int) 192 => 'Liver',
(int) 193 => 'Lung',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Brain',
(int) 197 => 'Kidney',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta'
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
'ENSDARG00000014867' => array(
[maximum depth reached]
),
'ENSDARG00000020573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Brain',
(int) 19 => 'Kidney',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '59575774',
'seq_end' => '59576043',
'region_length' => '269',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
)
$gene_el = array(
'ENSMUST00000186827' => array(
'Adipose' => array(
'average_FPKM' => '0.132',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.02'
),
'Brain' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.215',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.211',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.745',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.179',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.214',
'stddev_FPKM' => '0.15'
),
'Placenta' => array(
'average_FPKM' => '0.261',
'stddev_FPKM' => '0.14'
)
),
'ENSMUST00000186931' => array(
'Brain' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.090',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.139',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000100714'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.090',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.139',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000186931'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000124486' => 'ubiquitin specific peptidase 9, X-linked',
'ENSG00000147044' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSG00000188937' => 'nyctalopin',
'ENSG00000199564' => 'RNA, 5S ribosomal pseudogene 502',
'ENSG00000215301' => 'DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked',
'ENSG00000223714' => null,
'ENSG00000225238' => null,
'ENSG00000226641' => null,
'ENSG00000233033' => 'CASK antisense RNA 1',
'ENSG00000238426' => 'Y RNA',
'ENSG00000264573' => 'RNA, 7SL, cytoplasmic 15, pseudogene',
'ENSG00000269941' => null,
'ENSMUSG00000000787' => 'DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked',
'ENSMUSG00000031010' => 'ubiquitin specific peptidase 9, X chromosome',
'ENSMUSG00000031012' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSMUSG00000051228' => 'nyctalopin',
'ENSMUSG00000065813' => 'nuclear encoded rRNA 5S 3',
'ENSMUSG00000080818' => 'predicted gene 9434',
'ENSMUSG00000080914' => 'predicted gene 7129',
'ENSMUSG00000081255' => 'predicted gene 5380',
'ENSMUSG00000081597' => 'predicted gene 14506',
'ENSMUSG00000082090' => 'predicted gene 16481',
'ENSMUSG00000083364' => 'LLP homolog, pseudogene 2',
'ENSMUSG00000084349' => 'ribosomal protein L3, pseudogene 1',
'ENSMUSG00000094259' => 'predicted gene 14536',
'ENSMUSG00000094574' => 'predicted gene 15027',
'ENSMUSG00000100714' => 'RIKEN cDNA 2010308F09 gene',
'ENSDARG00000013708' => 'ubiquitin specific peptidase 9',
'ENSDARG00000014867' => 'ribosomal protein L8',
'ENSDARG00000020573' => 'DEAD (Asp-Glu-Ala-Asp) box polypeptide 3'
),
'gene_name_arr' => array(
'ENSG00000124486' => 'USP9X',
'ENSG00000147044' => 'CASK',
'ENSG00000188937' => 'NYX',
'ENSG00000199564' => 'RNA5SP502',
'ENSG00000215301' => 'DDX3X',
'ENSG00000223714' => 'RP5-1172N10.2',
'ENSG00000225238' => 'RP1-169I5.4',
'ENSG00000226641' => 'RP13-13A3.1',
'ENSG00000233033' => 'CASK-AS1',
'ENSG00000238426' => 'Y_RNA',
'ENSG00000264573' => 'RN7SL15P',
'ENSG00000269941' => 'RP5-1172N10.4',
'ENSMUSG00000000787' => 'Ddx3x',
'ENSMUSG00000031010' => 'Usp9x',
'ENSMUSG00000031012' => 'Cask',
'ENSMUSG00000051228' => 'Nyx',
'ENSMUSG00000065813' => 'n-R5s3',
'ENSMUSG00000080818' => 'Gm9434',
'ENSMUSG00000080914' => 'Gm7129',
'ENSMUSG00000081255' => 'Gm5380',
'ENSMUSG00000081597' => 'Gm14506',
'ENSMUSG00000082090' => 'Gm16481',
'ENSMUSG00000083364' => 'Llph-ps2',
'ENSMUSG00000084349' => 'Rpl3-ps1',
'ENSMUSG00000094259' => 'Gm14536',
'ENSMUSG00000094574' => 'Gm15027',
'ENSMUSG00000100714' => 'RP23-158L19.7',
'ENSDARG00000013708' => 'usp9',
'ENSDARG00000014867' => 'rpl8',
'ENSDARG00000020573' => 'ddx3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 54 => 'Brain',
(int) 85 => 'Breast',
(int) 107 => 'Colon',
(int) 125 => 'Heart',
(int) 148 => 'Kidney',
(int) 178 => 'Liver',
(int) 206 => 'Lung',
(int) 228 => 'Muscle',
(int) 248 => 'Ovary',
(int) 282 => 'Placenta',
(int) 313 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 92,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000324545' => array(
'start' => '41085635',
'end' => '41236579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-003'
),
'ENST00000378308' => array(
'start' => '41085635',
'end' => '41232597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-001'
),
'ENST00000462850' => array(
'start' => '41195905',
'end' => '41198571',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP9X-009'
),
'ENST00000463829' => array(
'start' => '41188066',
'end' => '41189922',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-007'
),
'ENST00000465386' => array(
'start' => '41183994',
'end' => '41184740',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-008'
),
'ENST00000467173' => array(
'start' => '41167145',
'end' => '41168242',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-002'
),
'ENST00000485180' => array(
'start' => '41228983',
'end' => '41229896',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-010'
),
'ENST00000487625' => array(
'start' => '41205059',
'end' => '41210654',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-004'
),
'ENST00000378154' => array(
'start' => '41559497',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-006'
),
'ENST00000378158' => array(
'start' => '41519653',
'end' => '41923339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-001'
),
'ENST00000378163' => array(
'start' => '41519265',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-007'
),
'ENST00000378166' => array(
'start' => '41520090',
'end' => '41923015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-005'
),
'ENST00000378168' => array(
'start' => '41519549',
'end' => '41561627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-012'
),
'ENST00000378179' => array(
'start' => '41519527',
'end' => '41589951',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-002'
),
'ENST00000421587' => array(
'start' => '41514934',
'end' => '41923012',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-004'
),
'ENST00000442742' => array(
'start' => '41520336',
'end' => '41923007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-013'
),
'ENST00000468986' => array(
'start' => '41743613',
'end' => '41923015',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-008'
),
'ENST00000469265' => array(
'start' => '41635728',
'end' => '41665431',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-011'
),
'ENST00000472704' => array(
'start' => '41552605',
'end' => '41578453',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-003'
),
'ENST00000477823' => array(
'start' => '41786810',
'end' => '41922982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-009'
),
'ENST00000486402' => array(
'start' => '41660101',
'end' => '41665832',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-010'
),
'ENST00000342595' => array(
'start' => '41447434',
'end' => '41475710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-001'
),
'ENST00000378220' => array(
'start' => '41447460',
'end' => '41475652',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-002'
),
'ENST00000486842' => array(
'start' => '41472181',
'end' => '41473709',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NYX-003'
),
'ENST00000362694' => array(
'start' => '41292798',
'end' => '41292916',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP502-201'
),
'ENST00000399959' => array(
'start' => '41333398',
'end' => '41350274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-001'
),
'ENST00000441189' => array(
'start' => '41334162',
'end' => '41348259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-005'
),
'ENST00000457138' => array(
'start' => '41333398',
'end' => '41350269',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-201'
),
'ENST00000478993' => array(
'start' => '41333398',
'end' => '41364472',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-002'
),
'ENST00000480592' => array(
'start' => '41334174',
'end' => '41338509',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-003'
),
'ENST00000542215' => array(
'start' => '41334591',
'end' => '41346551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-004'
),
'ENST00000610559' => array(
'start' => '41333348',
'end' => '41339083',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-010'
),
'ENST00000611546' => array(
'start' => '41334670',
'end' => '41342520',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-008'
),
'ENST00000611968' => array(
'start' => '41346566',
'end' => '41348138',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-012'
),
'ENST00000615313' => array(
'start' => '41334612',
'end' => '41342542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-007'
),
'ENST00000615742' => array(
'start' => '41334162',
'end' => '41342506',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-011'
),
'ENST00000616050' => array(
'start' => '41346361',
'end' => '41358000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-013'
),
'ENST00000622198' => array(
'start' => '41334670',
'end' => '41342518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-009'
),
'ENST00000622373' => array(
'start' => '41334610',
'end' => '41336738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DDX3X-006'
),
'ENST00000452501' => array(
'start' => '41275739',
'end' => '41276778',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1172N10.2-001'
),
'ENST00000451718' => array(
'start' => '41472264',
'end' => '41472653',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-169I5.4-001'
),
'ENST00000395664' => array(
'start' => '41322601',
'end' => '41323111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-13A3.1-001'
),
'ENST00000451126' => array(
'start' => '41520036',
'end' => '41522336',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CASK-AS1-001'
),
'ENST00000459189' => array(
'start' => '41316488',
'end' => '41316589',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-835'
),
'ENST00000582825' => array(
'start' => '41345576',
'end' => '41345876',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL15P-201'
),
'ENST00000602481' => array(
'start' => '41233633',
'end' => '41234283',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP5-1172N10.4-001'
),
'ENSMUST00000000804' => array(
'start' => '13280970',
'end' => '13294052',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ddx3x-001'
),
'ENSMUST00000123096' => array(
'start' => '13287284',
'end' => '13288852',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-004'
),
'ENSMUST00000149639' => array(
'start' => '13287785',
'end' => '13289915',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-005'
),
'ENSMUST00000153611' => array(
'start' => '13281032',
'end' => '13287872',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-003'
),
'ENSMUST00000153851' => array(
'start' => '13281022',
'end' => '13292022',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ddx3x-002'
),
'ENSMUST00000089302' => array(
'start' => '13071514',
'end' => '13173328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-001'
),
'ENSMUST00000124097' => array(
'start' => '13129327',
'end' => '13133782',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-003'
),
'ENSMUST00000133997' => array(
'start' => '13160857',
'end' => '13169898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-005'
),
'ENSMUST00000139764' => array(
'start' => '13071514',
'end' => '13122161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-004'
),
'ENSMUST00000149021' => array(
'start' => '13113684',
'end' => '13123233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-007'
),
'ENSMUST00000169594' => array(
'start' => '13071498',
'end' => '13123449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-002'
),
'ENSMUST00000174762' => array(
'start' => '13129060',
'end' => '13132570',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-006'
),
'ENSMUST00000033321' => array(
'start' => '13521331',
'end' => '13846556',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-002'
),
'ENSMUST00000115435' => array(
'start' => '13521782',
'end' => '13526768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-005'
),
'ENSMUST00000115436' => array(
'start' => '13517080',
'end' => '13846541',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-201'
),
'ENSMUST00000115438' => array(
'start' => '13517080',
'end' => '13846578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-001'
),
'ENSMUST00000124710' => array(
'start' => '13626280',
'end' => '13846088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-006'
),
'ENSMUST00000128012' => array(
'start' => '13571103',
'end' => '13677594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-011'
),
'ENSMUST00000128095' => array(
'start' => '13522080',
'end' => '13537669',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-004'
),
'ENSMUST00000132240' => array(
'start' => '13714731',
'end' => '13851367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-009'
),
'ENSMUST00000139735' => array(
'start' => '13533340',
'end' => '13559331',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-008'
),
'ENSMUST00000152358' => array(
'start' => '13554584',
'end' => '13846578',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cask-010'
),
'ENSMUST00000155989' => array(
'start' => '13846090',
'end' => '13846735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-007'
),
'ENSMUST00000156096' => array(
'start' => '13517080',
'end' => '13786030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-003'
),
'ENSMUST00000050434' => array(
'start' => '13466110',
'end' => '13489313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nyx-001'
),
'ENSMUST00000083879' => array(
'start' => '13215698',
'end' => '13215809',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s3-201'
),
'ENSMUST00000118975' => array(
'start' => '13377866',
'end' => '13378678',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9434-001'
),
'ENSMUST00000117402' => array(
'start' => '13326023',
'end' => '13327019',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm7129-001'
),
'ENSMUST00000119296' => array(
'start' => '13302285',
'end' => '13304420',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5380-001'
),
'ENSMUST00000121165' => array(
'start' => '13490498',
'end' => '13491033',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14506-001'
),
'ENSMUST00000119074' => array(
'start' => '13238327',
'end' => '13239553',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16481-001'
),
'ENSMUST00000122000' => array(
'start' => '13218210',
'end' => '13218602',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Llph-ps2-001'
),
'ENSMUST00000120557' => array(
'start' => '13202571',
'end' => '13203780',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl3-ps1-001'
),
'ENSMUST00000118324' => array(
'start' => '13189538',
'end' => '13189675',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14536-001'
),
'ENSMUST00000120922' => array(
'start' => '13179443',
'end' => '13179580',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm15027-001'
),
'ENSMUST00000186827' => array(
'start' => '13234641',
'end' => '13236283',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-002'
),
'ENSMUST00000186931' => array(
'start' => '13234684',
'end' => '13247736',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-001'
),
'ENSDART00000025635' => array(
'start' => '34300519',
'end' => '34352703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-201'
),
'ENSDART00000122803' => array(
'start' => '34300519',
'end' => '34354342',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-202'
),
'ENSDART00000135384' => array(
'start' => '34294638',
'end' => '34354348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-001'
),
'ENSDART00000006948' => array(
'start' => '34356418',
'end' => '34362256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-201'
),
'ENSDART00000132973' => array(
'start' => '34358180',
'end' => '34362252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'rpl8-003'
),
'ENSDART00000140039' => array(
'start' => '34356412',
'end' => '34363095',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-001'
),
'ENSDART00000147265' => array(
'start' => '34358520',
'end' => '34363008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-002'
),
'ENSDART00000006867' => array(
'start' => '34367809',
'end' => '34388046',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-001'
),
'ENSDART00000140064' => array(
'start' => '34373619',
'end' => '34379577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
'ENSG00000124486' => array(
[maximum depth reached]
),
'ENSG00000147044' => array(
[maximum depth reached]
),
'ENSG00000215301' => array(
[maximum depth reached]
),
'ENSG00000223714' => array(
[maximum depth reached]
),
'ENSG00000226641' => array(
[maximum depth reached]
),
'ENSG00000233033' => array(
[maximum depth reached]
),
'ENSG00000238426' => array(
[maximum depth reached]
),
'ENSG00000264573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Ovary',
(int) 48 => 'Bladder',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Heart',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Kidney',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Testis',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Colon',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Breast',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis'
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000000787' => array(
[maximum depth reached]
),
'ENSMUSG00000031010' => array(
[maximum depth reached]
),
'ENSMUSG00000031012' => array(
[maximum depth reached]
),
'ENSMUSG00000051228' => array(
[maximum depth reached]
),
'ENSMUSG00000080818' => array(
[maximum depth reached]
),
'ENSMUSG00000080914' => array(
[maximum depth reached]
),
'ENSMUSG00000081255' => array(
[maximum depth reached]
),
'ENSMUSG00000081597' => array(
[maximum depth reached]
),
'ENSMUSG00000082090' => array(
[maximum depth reached]
),
'ENSMUSG00000083364' => array(
[maximum depth reached]
),
'ENSMUSG00000084349' => array(
[maximum depth reached]
),
'ENSMUSG00000100714' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Colon',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Placenta',
(int) 38 => 'Adrenal',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Bladder',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Testis',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Liver',
(int) 115 => 'Ovary',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Bladder',
(int) 131 => 'Brain',
(int) 132 => 'Breast',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Liver',
(int) 146 => 'Lung',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Kidney',
(int) 157 => 'Liver',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Bladder',
(int) 164 => 'Brain',
(int) 165 => 'Breast',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Bladder',
(int) 189 => 'Brain',
(int) 190 => 'Colon',
(int) 191 => 'Kidney',
(int) 192 => 'Liver',
(int) 193 => 'Lung',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Brain',
(int) 197 => 'Kidney',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta'
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
'ENSDARG00000014867' => array(
[maximum depth reached]
),
'ENSDARG00000020573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Brain',
(int) 19 => 'Kidney',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000124486' => 'ubiquitin specific peptidase 9, X-linked',
'ENSG00000147044' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSG00000188937' => 'nyctalopin',
'ENSG00000199564' => 'RNA, 5S ribosomal pseudogene 502',
'ENSG00000215301' => 'DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked',
'ENSG00000223714' => null,
'ENSG00000225238' => null,
'ENSG00000226641' => null,
'ENSG00000233033' => 'CASK antisense RNA 1',
'ENSG00000238426' => 'Y RNA',
'ENSG00000264573' => 'RNA, 7SL, cytoplasmic 15, pseudogene',
'ENSG00000269941' => null,
'ENSMUSG00000000787' => 'DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked',
'ENSMUSG00000031010' => 'ubiquitin specific peptidase 9, X chromosome',
'ENSMUSG00000031012' => 'calcium/calmodulin-dependent serine protein kinase (MAGUK family)',
'ENSMUSG00000051228' => 'nyctalopin',
'ENSMUSG00000065813' => 'nuclear encoded rRNA 5S 3',
'ENSMUSG00000080818' => 'predicted gene 9434',
'ENSMUSG00000080914' => 'predicted gene 7129',
'ENSMUSG00000081255' => 'predicted gene 5380',
'ENSMUSG00000081597' => 'predicted gene 14506',
'ENSMUSG00000082090' => 'predicted gene 16481',
'ENSMUSG00000083364' => 'LLP homolog, pseudogene 2',
'ENSMUSG00000084349' => 'ribosomal protein L3, pseudogene 1',
'ENSMUSG00000094259' => 'predicted gene 14536',
'ENSMUSG00000094574' => 'predicted gene 15027',
'ENSMUSG00000100714' => 'RIKEN cDNA 2010308F09 gene',
'ENSDARG00000013708' => 'ubiquitin specific peptidase 9',
'ENSDARG00000014867' => 'ribosomal protein L8',
'ENSDARG00000020573' => 'DEAD (Asp-Glu-Ala-Asp) box polypeptide 3'
)
$gene_name_arr = array(
'ENSG00000124486' => 'USP9X',
'ENSG00000147044' => 'CASK',
'ENSG00000188937' => 'NYX',
'ENSG00000199564' => 'RNA5SP502',
'ENSG00000215301' => 'DDX3X',
'ENSG00000223714' => 'RP5-1172N10.2',
'ENSG00000225238' => 'RP1-169I5.4',
'ENSG00000226641' => 'RP13-13A3.1',
'ENSG00000233033' => 'CASK-AS1',
'ENSG00000238426' => 'Y_RNA',
'ENSG00000264573' => 'RN7SL15P',
'ENSG00000269941' => 'RP5-1172N10.4',
'ENSMUSG00000000787' => 'Ddx3x',
'ENSMUSG00000031010' => 'Usp9x',
'ENSMUSG00000031012' => 'Cask',
'ENSMUSG00000051228' => 'Nyx',
'ENSMUSG00000065813' => 'n-R5s3',
'ENSMUSG00000080818' => 'Gm9434',
'ENSMUSG00000080914' => 'Gm7129',
'ENSMUSG00000081255' => 'Gm5380',
'ENSMUSG00000081597' => 'Gm14506',
'ENSMUSG00000082090' => 'Gm16481',
'ENSMUSG00000083364' => 'Llph-ps2',
'ENSMUSG00000084349' => 'Rpl3-ps1',
'ENSMUSG00000094259' => 'Gm14536',
'ENSMUSG00000094574' => 'Gm15027',
'ENSMUSG00000100714' => 'RP23-158L19.7',
'ENSDARG00000013708' => 'usp9',
'ENSDARG00000014867' => 'rpl8',
'ENSDARG00000020573' => 'ddx3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0001',
'tax_id' => '9606',
'chromosome' => 'X',
'seq_start' => '41232520',
'seq_end' => '41520330',
'region_length' => '287810',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0002',
'tax_id' => '10090',
'chromosome' => 'X',
'seq_start' => '13169486',
'seq_end' => '13522078',
'region_length' => '352592',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '59575774',
'seq_end' => '59576043',
'region_length' => '269',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '34353947',
'seq_end' => '34387450',
'region_length' => '33503',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 35 => 'Bladder',
(int) 54 => 'Brain',
(int) 85 => 'Breast',
(int) 107 => 'Colon',
(int) 125 => 'Heart',
(int) 148 => 'Kidney',
(int) 178 => 'Liver',
(int) 206 => 'Lung',
(int) 228 => 'Muscle',
(int) 248 => 'Ovary',
(int) 282 => 'Placenta',
(int) 313 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 92
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000324545' => array(
'start' => '41085635',
'end' => '41236579',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-003'
),
'ENST00000378308' => array(
'start' => '41085635',
'end' => '41232597',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP9X-001'
),
'ENST00000462850' => array(
'start' => '41195905',
'end' => '41198571',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP9X-009'
),
'ENST00000463829' => array(
'start' => '41188066',
'end' => '41189922',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-007'
),
'ENST00000465386' => array(
'start' => '41183994',
'end' => '41184740',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-008'
),
'ENST00000467173' => array(
'start' => '41167145',
'end' => '41168242',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-002'
),
'ENST00000485180' => array(
'start' => '41228983',
'end' => '41229896',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-010'
),
'ENST00000487625' => array(
'start' => '41205059',
'end' => '41210654',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP9X-004'
),
'ENST00000378154' => array(
'start' => '41559497',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-006'
),
'ENST00000378158' => array(
'start' => '41519653',
'end' => '41923339',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-001'
),
'ENST00000378163' => array(
'start' => '41519265',
'end' => '41923463',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-007'
),
'ENST00000378166' => array(
'start' => '41520090',
'end' => '41923015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-005'
),
'ENST00000378168' => array(
'start' => '41519549',
'end' => '41561627',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-012'
),
'ENST00000378179' => array(
'start' => '41519527',
'end' => '41589951',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-002'
),
'ENST00000421587' => array(
'start' => '41514934',
'end' => '41923012',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-004'
),
'ENST00000442742' => array(
'start' => '41520336',
'end' => '41923007',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CASK-013'
),
'ENST00000468986' => array(
'start' => '41743613',
'end' => '41923015',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-008'
),
'ENST00000469265' => array(
'start' => '41635728',
'end' => '41665431',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-011'
),
'ENST00000472704' => array(
'start' => '41552605',
'end' => '41578453',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-003'
),
'ENST00000477823' => array(
'start' => '41786810',
'end' => '41922982',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-009'
),
'ENST00000486402' => array(
'start' => '41660101',
'end' => '41665832',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CASK-010'
),
'ENST00000342595' => array(
'start' => '41447434',
'end' => '41475710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-001'
),
'ENST00000378220' => array(
'start' => '41447460',
'end' => '41475652',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NYX-002'
),
'ENST00000486842' => array(
'start' => '41472181',
'end' => '41473709',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NYX-003'
),
'ENST00000362694' => array(
'start' => '41292798',
'end' => '41292916',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP502-201'
),
'ENST00000399959' => array(
'start' => '41333398',
'end' => '41350274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-001'
),
'ENST00000441189' => array(
'start' => '41334162',
'end' => '41348259',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-005'
),
'ENST00000457138' => array(
'start' => '41333398',
'end' => '41350269',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-201'
),
'ENST00000478993' => array(
'start' => '41333398',
'end' => '41364472',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-002'
),
'ENST00000480592' => array(
'start' => '41334174',
'end' => '41338509',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-003'
),
'ENST00000542215' => array(
'start' => '41334591',
'end' => '41346551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-004'
),
'ENST00000610559' => array(
'start' => '41333348',
'end' => '41339083',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-010'
),
'ENST00000611546' => array(
'start' => '41334670',
'end' => '41342520',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-008'
),
'ENST00000611968' => array(
'start' => '41346566',
'end' => '41348138',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DDX3X-012'
),
'ENST00000615313' => array(
'start' => '41334612',
'end' => '41342542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-007'
),
'ENST00000615742' => array(
'start' => '41334162',
'end' => '41342506',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DDX3X-011'
),
'ENST00000616050' => array(
'start' => '41346361',
'end' => '41358000',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-013'
),
'ENST00000622198' => array(
'start' => '41334670',
'end' => '41342518',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DDX3X-009'
),
'ENST00000622373' => array(
'start' => '41334610',
'end' => '41336738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DDX3X-006'
),
'ENST00000452501' => array(
'start' => '41275739',
'end' => '41276778',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP5-1172N10.2-001'
),
'ENST00000451718' => array(
'start' => '41472264',
'end' => '41472653',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP1-169I5.4-001'
),
'ENST00000395664' => array(
'start' => '41322601',
'end' => '41323111',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP13-13A3.1-001'
),
'ENST00000451126' => array(
'start' => '41520036',
'end' => '41522336',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CASK-AS1-001'
),
'ENST00000459189' => array(
'start' => '41316488',
'end' => '41316589',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-835'
),
'ENST00000582825' => array(
'start' => '41345576',
'end' => '41345876',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL15P-201'
),
'ENST00000602481' => array(
'start' => '41233633',
'end' => '41234283',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP5-1172N10.4-001'
),
'ENSMUST00000000804' => array(
'start' => '13280970',
'end' => '13294052',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ddx3x-001'
),
'ENSMUST00000123096' => array(
'start' => '13287284',
'end' => '13288852',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-004'
),
'ENSMUST00000149639' => array(
'start' => '13287785',
'end' => '13289915',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-005'
),
'ENSMUST00000153611' => array(
'start' => '13281032',
'end' => '13287872',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ddx3x-003'
),
'ENSMUST00000153851' => array(
'start' => '13281022',
'end' => '13292022',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ddx3x-002'
),
'ENSMUST00000089302' => array(
'start' => '13071514',
'end' => '13173328',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-001'
),
'ENSMUST00000124097' => array(
'start' => '13129327',
'end' => '13133782',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-003'
),
'ENSMUST00000133997' => array(
'start' => '13160857',
'end' => '13169898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-005'
),
'ENSMUST00000139764' => array(
'start' => '13071514',
'end' => '13122161',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-004'
),
'ENSMUST00000149021' => array(
'start' => '13113684',
'end' => '13123233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-007'
),
'ENSMUST00000169594' => array(
'start' => '13071498',
'end' => '13123449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp9x-002'
),
'ENSMUST00000174762' => array(
'start' => '13129060',
'end' => '13132570',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp9x-006'
),
'ENSMUST00000033321' => array(
'start' => '13521331',
'end' => '13846556',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-002'
),
'ENSMUST00000115435' => array(
'start' => '13521782',
'end' => '13526768',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-005'
),
'ENSMUST00000115436' => array(
'start' => '13517080',
'end' => '13846541',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-201'
),
'ENSMUST00000115438' => array(
'start' => '13517080',
'end' => '13846578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-001'
),
'ENSMUST00000124710' => array(
'start' => '13626280',
'end' => '13846088',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-006'
),
'ENSMUST00000128012' => array(
'start' => '13571103',
'end' => '13677594',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-011'
),
'ENSMUST00000128095' => array(
'start' => '13522080',
'end' => '13537669',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-004'
),
'ENSMUST00000132240' => array(
'start' => '13714731',
'end' => '13851367',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-009'
),
'ENSMUST00000139735' => array(
'start' => '13533340',
'end' => '13559331',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-008'
),
'ENSMUST00000152358' => array(
'start' => '13554584',
'end' => '13846578',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cask-010'
),
'ENSMUST00000155989' => array(
'start' => '13846090',
'end' => '13846735',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cask-007'
),
'ENSMUST00000156096' => array(
'start' => '13517080',
'end' => '13786030',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cask-003'
),
'ENSMUST00000050434' => array(
'start' => '13466110',
'end' => '13489313',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nyx-001'
),
'ENSMUST00000083879' => array(
'start' => '13215698',
'end' => '13215809',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'n-R5s3-201'
),
'ENSMUST00000118975' => array(
'start' => '13377866',
'end' => '13378678',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm9434-001'
),
'ENSMUST00000117402' => array(
'start' => '13326023',
'end' => '13327019',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm7129-001'
),
'ENSMUST00000119296' => array(
'start' => '13302285',
'end' => '13304420',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm5380-001'
),
'ENSMUST00000121165' => array(
'start' => '13490498',
'end' => '13491033',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm14506-001'
),
'ENSMUST00000119074' => array(
'start' => '13238327',
'end' => '13239553',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm16481-001'
),
'ENSMUST00000122000' => array(
'start' => '13218210',
'end' => '13218602',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Llph-ps2-001'
),
'ENSMUST00000120557' => array(
'start' => '13202571',
'end' => '13203780',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Rpl3-ps1-001'
),
'ENSMUST00000118324' => array(
'start' => '13189538',
'end' => '13189675',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm14536-001'
),
'ENSMUST00000120922' => array(
'start' => '13179443',
'end' => '13179580',
'transcript_biotype' => 'unprocessed_pseudogene',
'transcript_name' => 'Gm15027-001'
),
'ENSMUST00000186827' => array(
'start' => '13234641',
'end' => '13236283',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-002'
),
'ENSMUST00000186931' => array(
'start' => '13234684',
'end' => '13247736',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-158L19.7-001'
),
'ENSDART00000025635' => array(
'start' => '34300519',
'end' => '34352703',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-201'
),
'ENSDART00000122803' => array(
'start' => '34300519',
'end' => '34354342',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-202'
),
'ENSDART00000135384' => array(
'start' => '34294638',
'end' => '34354348',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'usp9-001'
),
'ENSDART00000006948' => array(
'start' => '34356418',
'end' => '34362256',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-201'
),
'ENSDART00000132973' => array(
'start' => '34358180',
'end' => '34362252',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'rpl8-003'
),
'ENSDART00000140039' => array(
'start' => '34356412',
'end' => '34363095',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-001'
),
'ENSDART00000147265' => array(
'start' => '34358520',
'end' => '34363008',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rpl8-002'
),
'ENSDART00000006867' => array(
'start' => '34367809',
'end' => '34388046',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-001'
),
'ENSDART00000140064' => array(
'start' => '34373619',
'end' => '34379577',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ddx3-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LW_0001' => array(
'genes_in_region' => array(
'ENSG00000124486' => array(
[maximum depth reached]
),
'ENSG00000147044' => array(
[maximum depth reached]
),
'ENSG00000215301' => array(
[maximum depth reached]
),
'ENSG00000223714' => array(
[maximum depth reached]
),
'ENSG00000226641' => array(
[maximum depth reached]
),
'ENSG00000233033' => array(
[maximum depth reached]
),
'ENSG00000238426' => array(
[maximum depth reached]
),
'ENSG00000264573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adipose',
(int) 10 => 'Adrenal',
(int) 11 => 'Bladder',
(int) 12 => 'Brain',
(int) 13 => 'Breast',
(int) 14 => 'Colon',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Testis',
(int) 26 => 'Adipose',
(int) 27 => 'Adrenal',
(int) 28 => 'Bladder',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Brain',
(int) 40 => 'Heart',
(int) 41 => 'Lung',
(int) 42 => 'Muscle',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Kidney',
(int) 46 => 'Liver',
(int) 47 => 'Ovary',
(int) 48 => 'Bladder',
(int) 49 => 'Adipose',
(int) 50 => 'Adrenal',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Heart',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Kidney',
(int) 77 => 'Ovary',
(int) 78 => 'Placenta',
(int) 79 => 'Testis',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Testis',
(int) 85 => 'Bladder',
(int) 86 => 'Brain',
(int) 87 => 'Breast',
(int) 88 => 'Colon',
(int) 89 => 'Heart',
(int) 90 => 'Kidney',
(int) 91 => 'Liver',
(int) 92 => 'Muscle',
(int) 93 => 'Ovary',
(int) 94 => 'Placenta',
(int) 95 => 'Testis',
(int) 96 => 'Adrenal',
(int) 97 => 'Brain',
(int) 98 => 'Colon',
(int) 99 => 'Ovary',
(int) 100 => 'Testis',
(int) 101 => 'Adipose',
(int) 102 => 'Adrenal',
(int) 103 => 'Breast',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Brain',
(int) 110 => 'Breast',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Ovary',
(int) 117 => 'Placenta',
(int) 118 => 'Testis'
)
),
'CIL_0007LW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000000787' => array(
[maximum depth reached]
),
'ENSMUSG00000031010' => array(
[maximum depth reached]
),
'ENSMUSG00000031012' => array(
[maximum depth reached]
),
'ENSMUSG00000051228' => array(
[maximum depth reached]
),
'ENSMUSG00000080818' => array(
[maximum depth reached]
),
'ENSMUSG00000080914' => array(
[maximum depth reached]
),
'ENSMUSG00000081255' => array(
[maximum depth reached]
),
'ENSMUSG00000081597' => array(
[maximum depth reached]
),
'ENSMUSG00000082090' => array(
[maximum depth reached]
),
'ENSMUSG00000083364' => array(
[maximum depth reached]
),
'ENSMUSG00000084349' => array(
[maximum depth reached]
),
'ENSMUSG00000100714' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Ovary',
(int) 20 => 'Placenta',
(int) 21 => 'Testis',
(int) 22 => 'Colon',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Muscle',
(int) 34 => 'Ovary',
(int) 35 => 'Placenta',
(int) 36 => 'Testis',
(int) 37 => 'Placenta',
(int) 38 => 'Adrenal',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Bladder',
(int) 55 => 'Breast',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Brain',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Muscle',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Ovary',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Adrenal',
(int) 84 => 'Colon',
(int) 85 => 'Lung',
(int) 86 => 'Ovary',
(int) 87 => 'Testis',
(int) 88 => 'Bladder',
(int) 89 => 'Brain',
(int) 90 => 'Breast',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Muscle',
(int) 96 => 'Ovary',
(int) 97 => 'Placenta',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Brain',
(int) 114 => 'Liver',
(int) 115 => 'Ovary',
(int) 116 => 'Placenta',
(int) 117 => 'Testis',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Heart',
(int) 124 => 'Kidney',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Adrenal',
(int) 130 => 'Bladder',
(int) 131 => 'Brain',
(int) 132 => 'Breast',
(int) 133 => 'Heart',
(int) 134 => 'Kidney',
(int) 135 => 'Liver',
(int) 136 => 'Lung',
(int) 137 => 'Ovary',
(int) 138 => 'Placenta',
(int) 139 => 'Testis',
(int) 140 => 'Adipose',
(int) 141 => 'Brain',
(int) 142 => 'Colon',
(int) 143 => 'Heart',
(int) 144 => 'Kidney',
(int) 145 => 'Liver',
(int) 146 => 'Lung',
(int) 147 => 'Ovary',
(int) 148 => 'Placenta',
(int) 149 => 'Testis',
(int) 150 => 'Adipose',
(int) 151 => 'Adrenal',
(int) 152 => 'Bladder',
(int) 153 => 'Brain',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Kidney',
(int) 157 => 'Liver',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Bladder',
(int) 164 => 'Brain',
(int) 165 => 'Breast',
(int) 166 => 'Kidney',
(int) 167 => 'Liver',
(int) 168 => 'Lung',
(int) 169 => 'Muscle',
(int) 170 => 'Ovary',
(int) 171 => 'Placenta',
(int) 172 => 'Testis',
(int) 173 => 'Adipose',
(int) 174 => 'Adrenal',
(int) 175 => 'Bladder',
(int) 176 => 'Brain',
(int) 177 => 'Breast',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Adipose',
(int) 188 => 'Bladder',
(int) 189 => 'Brain',
(int) 190 => 'Colon',
(int) 191 => 'Kidney',
(int) 192 => 'Liver',
(int) 193 => 'Lung',
(int) 194 => 'Ovary',
(int) 195 => 'Placenta',
(int) 196 => 'Brain',
(int) 197 => 'Kidney',
(int) 198 => 'Ovary',
(int) 199 => 'Placenta'
)
),
'CIL_0007LW_0004' => array(
'genes_in_region' => array(
'ENSDARG00000014867' => array(
[maximum depth reached]
),
'ENSDARG00000020573' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Brain',
(int) 19 => 'Kidney',
(int) 20 => 'Brain',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LW_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '59575774',
'seq_end' => '59576043',
'region_length' => '269',
'region_type' => 'UCNEbase',
'el_id' => 'DDX3X'
)
)
$gene_el = array(
'ENSMUST00000186827' => array(
'Adipose' => array(
'average_FPKM' => '0.132',
'stddev_FPKM' => '0.01'
),
'Bladder' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.02'
),
'Brain' => array(
'average_FPKM' => '0.087',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.215',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '0.211',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.745',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.179',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.214',
'stddev_FPKM' => '0.15'
),
'Placenta' => array(
'average_FPKM' => '0.261',
'stddev_FPKM' => '0.14'
)
),
'ENSMUST00000186931' => array(
'Brain' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.090',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.139',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000100714'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.04'
),
'Kidney' => array(
'average_FPKM' => '0.088',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.090',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.139',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000186931'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| DDX3X |
UCNEbase |
7955 |
6:59575774-59576043  |
| Gene | Transcript | Position | Biotype |
|---|
(USP9X)