C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007M1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ESRRB UCNEbase 9606 14:76034985-76675411
GeneTranscriptPositionBiotype
ENSG00000089916 (GPATCH2L)
G patch domain containing 2-like 		ENST00000261530 (GPATCH2L-003) 76151936-76214343 protein_coding
ENST00000312858 (GPATCH2L-014) 76151935-76202788 protein_coding
ENST00000553588 (GPATCH2L-010) 76180782-76196585 protein_coding
ENST00000554125 (GPATCH2L-001) 76151934-76180022 retained_intron
ENST00000554375 (GPATCH2L-004) 76151916-76202007 nonsense_mediated_decay
ENST00000554799 (GPATCH2L-006) 76170596-76195987 protein_coding
ENST00000556109 (GPATCH2L-008) 76151919-76154978 protein_coding
ENST00000556372 (GPATCH2L-013) 76195908-76254342 nonsense_mediated_decay
ENST00000556663 (GPATCH2L-002) 76153646-76174035 protein_coding
ENST00000556675 (GPATCH2L-012) 76180815-76234926 processed_transcript
ENST00000557207 (GPATCH2L-009) 76151930-76153002 protein_coding
ENST00000557263 (GPATCH2L-005) 76151922-76174035 protein_coding
ENST00000557542 (GPATCH2L-007) 76151919-76154681 protein_coding
ENST00000621494 (GPATCH2L-201) 76154354-76212803 protein_coding
ENSG00000119715 (ESRRB)
estrogen-related receptor beta 		ENST00000380887 (ESRRB-003) 76404429-76501841 protein_coding
ENST00000505752 (ESRRB-001) 76371144-76500865 nonsense_mediated_decay
ENST00000507951 (ESRRB-005) 76376357-76482129 processed_transcript
ENST00000509242 (ESRRB-201) 76407402-76501835 protein_coding
ENST00000509323 (ESRRB-004) 76439642-76463427 processed_transcript
ENST00000512784 (ESRRB-002) 76310614-76500704 protein_coding
ENST00000556177 (ESRRB-006) 76407538-76498511 protein_coding
ENST00000611036 (ESRRB-007) 76499646-76501835 retained_intron
ENSG00000242952 (RP11-187O7.1)
 ENST00000464073 (RP11-187O7.1-001) 76634775-76635661 transcribed_processed_pseudogene
ENSG00000258402 (RP11-516J2.1)
 ENST00000555465 (RP11-516J2.1-001) 76280943-76310066 lincRNA
ENSG00000259124 (RP11-187O7.3)
 ENST00000554926 (RP11-187O7.3-001) 76495363-76726712 lincRNA
ENSG00000271423 (CYCSP1)
cytochrome c, somatic pseudogene 1 		ENST00000604815 (CYCSP1-001) 76633714-76634028 processed_pseudogene
ENSG00000280078 (RP11-361H10.5)
 ENST00000624275 (RP11-361H10.5-001) 76279173-76283103 TEC

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007M1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ESRRB UCNEbase 10090 12:86115809-86636147
GeneTranscriptPositionBiotype
ENSMUSG00000007867 (Ift43)
intraflagellar transport 43 		ENSMUST00000054565 (Ift43-201) 86082561-86162458 protein_coding
ENSMUSG00000021254 (Gpatch2l)
G patch domain containing 2 like 		ENSMUST00000071106 (Gpatch2l-201) 86241890-86291414 protein_coding
ENSMUSG00000021255 (Esrrb)
estrogen related receptor, beta 		ENSMUST00000021680 (Esrrb-006) 86421883-86519800 protein_coding
ENSMUST00000110203 (Esrrb-003) 86421644-86515522 protein_coding
ENSMUST00000110204 (Esrrb-002) 86421644-86521625 protein_coding
ENSMUST00000116402 (Esrrb-001) 86361117-86521628 protein_coding
ENSMUST00000136464 (Esrrb-004) 86504409-86509967 processed_transcript
ENSMUST00000167891 (Esrrb-005) 86470117-86519065 protein_coding
ENSMUSG00000097488 (4732487G21Rik)
RIKEN cDNA 4732487G21 gene 		ENSMUST00000181495 (4732487G21Rik-201) 86290761-86306006 lincRNA
ENSMUSG00000097543 (Gm805)
predicted gene 805 		ENSMUST00000181667 (Gm805-201) 86169341-86195102 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007M1_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ESRRB UCNEbase 7955 17:52633941-53008451
GeneTranscriptPositionBiotype
ENSDARG00000040151 (esrrb)
estrogen-related receptor beta 		ENSDART00000007600 (esrrb-201) 52843627-52916658 protein_coding
ENSDARG00000087273 (IFT43)
intraflagellar transport 43 		ENSDART00000124303 (IFT43-201) 52648633-52649749 protein_coding
ENSDARG00000091391 (IFT43)
Intraflagellar transport protein 43 homolog 		ENSDART00000123726 (IFT43-201) 52624474-52640871 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007M1_0001ENSG00000089916ENST00000261530ENST00000312858ENST00000553588ENST00000554125ENST00000554375ENST00000554799ENST00000556109ENST00000556372ENST00000556663ENST00000556675ENST00000557207ENST00000557263ENST00000557542ENST00000621494ENSG00000119715ENST00000380887ENST00000505752ENST00000507951ENST00000509242ENST00000509323ENST00000512784ENST00000556177ENST00000611036ENSG00000242952ENST00000464073ENSG00000258402ENST00000555465ENSG00000259124ENST00000554926ENSG00000271423ENST00000604815ENSG00000280078ENST00000624275CIL_0007M1_0002ENSMUSG00000007867ENSMUST00000054565ENSMUSG00000021254ENSMUST00000071106ENSMUSG00000021255ENSMUST00000021680ENSMUST00000110203ENSMUST00000110204ENSMUST00000116402ENSMUST00000136464ENSMUST00000167891ENSMUSG00000097488ENSMUST00000181495ENSMUSG00000097543ENSMUST00000181667CIL_0007M1_0003ENSDARG00000040151ENSDART00000007600ENSDARG00000087273ENSDART00000124303ENSDARG00000091391ENSDART00000123726
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007M1_0001ENSG00000089916ENST00000261530ENST00000312858ENST00000554125ENST00000554375ENST00000557263ENST00000621494ENSG00000119715ENST00000380887ENST00000505752ENST00000507951ENST00000512784ENST00000556177ENST00000611036ENSG00000242952ENST00000464073ENSG00000258402ENST00000555465ENSG00000259124ENST00000554926ENSG00000271423ENST00000604815ENSG00000280078ENST00000624275CIL_0007M1_0002ENSMUSG00000007867ENSMUST00000054565ENSMUSG00000021254ENSMUST00000071106ENSMUSG00000021255ENSMUST00000021680ENSMUST00000110203ENSMUST00000110204ENSMUST00000116402ENSMUST00000136464ENSMUST00000167891ENSMUSG00000097488ENSMUST00000181495ENSMUSG00000097543ENSMUST00000181667CIL_0007M1_0003ENSDARG00000040151ENSDART00000007600ENSDARG00000087273ENSDART00000124303ENSDARG00000091391ENSDART00000123726
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089916 ENST00000261530 N/A 1.465±0.00 0.409±0.00 1.133±0.00 1.169±0.34 1.058±0.30 0.500±0.22 N/A 1.056±0.69 0.679±0.24 0.579±0.00 0.554±0.00 0.485±0.06 N/A
ENST00000312858 N/A N/A N/A N/A N/A N/A 1.037±0.00 N/A N/A 2.050±0.00 1.819±0.00 N/A 0.948±0.00 N/A
ENST00000553588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554125 N/A N/A 0.795±0.00 0.852±0.00 N/A 0.855±0.00 0.430±0.00 N/A 1.827±0.00 1.688±0.00 N/A 1.748±0.00 N/A N/A
ENST00000554375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.657±0.00 N/A 1.504±0.02 N/A
ENST00000554799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.953±0.00 2.440±0.00 18.305±0.00
ENST00000557542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621494 0.870±0.00 N/A 0.923±0.00 1.260±0.00 1.448±0.00 1.153±0.00 0.448±0.16 0.399±0.00 1.991±0.00 1.276±0.27 1.056±0.37 0.741±0.12 0.334±0.18 3.070±0.00
ENSG00000119715 ENST00000380887 N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505752 N/A N/A N/A N/A 0.115±0.00 N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A 0.190±0.00
ENST00000507951 N/A N/A N/A N/A N/A 0.237±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512784 N/A 0.128±0.00 4.170±0.00 N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A 0.104±0.00 0.053±0.00 0.522±0.00
ENST00000556177 0.055±0.00 N/A N/A 0.167±0.00 N/A N/A N/A N/A 0.036±0.00 N/A 1.300±0.42 0.032±0.01 N/A 0.645±0.00
ENST00000611036 0.122±0.00 0.196±0.00 1.497±0.00 0.032±0.02 0.133±0.06 N/A 1.596±0.00 4.408±0.00 N/A N/A 0.361±0.11 0.023±0.01 0.061±0.03 0.256±0.00
ENSG00000242952 ENST00000464073 0.036±0.00 0.113±0.00 N/A 0.041±0.00 0.098±0.00 0.107±0.00 0.034±0.00 0.171±0.00 0.050±0.00 0.071±0.00 0.064±0.00 0.183±0.00 0.278±0.00 0.034±0.00
ENSG00000258402 ENST00000555465 0.384±0.00 0.525±0.00 2.117±0.00 0.251±0.00 0.201±0.00 0.092±0.00 0.154±0.00 0.366±0.00 0.059±0.00 N/A 0.289±0.00 N/A N/A 0.317±0.23
ENSG00000259124 ENST00000554926 0.059±0.00 0.061±0.00 N/A 0.034±0.00 0.365±0.18 0.434±0.00 0.257±0.00 N/A 0.054±0.00 0.028±0.00 0.053±0.00 0.112±0.03 0.313±0.19 0.111±0.00
ENSG00000271423 ENST00000604815 N/A N/A N/A 0.122±0.00 0.059±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000280078 ENST00000624275 0.016±0.00 0.043±0.00 0.033±0.00 0.035±0.00 0.018±0.00 0.019±0.00 0.025±0.02 0.050±0.03 0.032±0.00 0.032±0.00 N/A 0.005±0.00 N/A 0.038±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000007867 ENSMUST00000054565 7.940±1.55 5.554±1.29 14.094±0.00 6.523±0.77 6.364±2.34 6.505±1.88 10.953±2.06 5.823±3.06 2.101±0.74 14.869±4.49 1.648±1.05 12.539±4.86 31.202±32.58 60.079±9.51
ENSMUSG00000021254 ENSMUST00000071106 4.866±1.13 3.430±1.23 5.961±0.01 6.161±1.86 4.558±1.79 2.703±1.51 2.450±0.51 1.791±0.52 2.480±0.99 4.595±0.43 3.008±0.80 4.652±2.50 2.761±1.08 6.063±3.20
ENSMUSG00000021255 ENSMUST00000021680 0.029±0.00 0.049±0.01 0.004±0.00 N/A N/A 0.018±0.00 N/A N/A N/A 0.024±0.00 0.472±0.00 0.256±0.03 N/A N/A
ENSMUST00000110203 N/A 0.096±0.02 N/A N/A 0.951±0.00 N/A N/A N/A 0.116±0.00 0.022±0.00 N/A N/A N/A N/A
ENSMUST00000110204 0.036±0.02 0.033±0.01 0.007±0.00 2.087±1.53 0.524±0.12 N/A 2.157±0.31 7.323±1.34 0.139±0.08 0.063±0.01 1.066±0.41 0.249±0.09 1.220±1.18 1.571±0.00
ENSMUST00000116402 0.016±0.00 N/A N/A N/A 0.204±0.03 0.067±0.04 4.504±0.47 1.203±0.43 0.042±0.00 0.150±0.01 0.500±0.34 0.375±0.12 0.773±0.00 N/A
ENSMUST00000136464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.200±0.61 N/A N/A
ENSMUST00000167891 0.096±0.00 0.066±0.00 0.006±0.00 N/A N/A 0.190±0.06 N/A N/A 0.042±0.00 0.036±0.00 N/A 0.648±0.00 N/A 1.791±0.29
ENSMUSG00000097488 ENSMUST00000181495 1.369±0.00 N/A N/A N/A 0.930±0.08 N/A 0.737±0.00 1.122±0.04 0.683±0.11 N/A 0.565±0.00 1.789±0.00 0.925±0.31 N/A
ENSMUSG00000097543 ENSMUST00000181667 N/A 0.094±0.00 0.010±0.00 0.009±0.00 0.018±0.01 N/A N/A N/A N/A N/A N/A 0.006±0.00 0.009±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040151 ENSDART00000007600 N/A N/A N/A 1.344±0.00 N/A N/A 0.192±0.07 N/A 0.058±0.00 N/A 1.425±0.00 N/A N/A N/A
ENSDARG00000087273 ENSDART00000124303 N/A N/A N/A 27.943±21.51 N/A N/A 10.402±7.95 20.160±0.00 N/A N/A 0.784±0.00 N/A N/A N/A
ENSDARG00000091391 ENSDART00000123726 N/A N/A N/A 15.030±8.58 N/A N/A 0.854±0.00 8.299±0.00 0.444±0.00 N/A 1.937±0.00 N/A N/A N/A

Loading