C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007M2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX3 UCNEbase 9606 X:140299081-140593102
GeneTranscriptPositionBiotype
ENSG00000134595 (SOX3)
SRY (sex determining region Y)-box 3 		ENST00000370536 (SOX3-001) 140502987-140505503 protein_coding
ENSG00000224942 (RP11-51C14.1)
 ENST00000420490 (RP11-51C14.1-001) 140397062-140398311 processed_pseudogene
ENSG00000225758 (RPS17P17)
ribosomal protein S17 pseudogene 17 		ENST00000419392 (RPS17P17-001) 140470866-140471274 processed_pseudogene
ENSG00000263377 (AL121875.1)
 ENST00000584172 (AL121875.1-201) 140404099-140404190 miRNA
CIL_0007M2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX3 UCNEbase 10090 X:60744129-60994835
GeneTranscriptPositionBiotype
ENSMUSG00000045179 (Sox3)
SRY (sex determining region Y)-box 3 		ENSMUST00000135107 (Sox3-001) 60891366-60893430 protein_coding
ENSMUSG00000067835 (Gm14661)
predicted gene 14661 		ENSMUST00000152669 (Gm14661-001) 60557728-60807993 antisense
ENSMUSG00000081323 (Rpl7l1-ps1)
ribosomal protein L7-like 1, pseudogene 1 		ENSMUST00000118822 (Rpl7l1-ps1-001) 60971990-60972714 processed_pseudogene
ENSMUSG00000081891 (Gm14660)
predicted gene 14660 		ENSMUST00000119809 (Gm14660-001) 60818208-60818782 processed_pseudogene
ENSMUSG00000087565 (Gm14662)
predicted gene 14662 		ENSMUST00000145552 (Gm14662-001) 60893653-60898067 antisense
CIL_0007M2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX3 UCNEbase 7955 14:33553092-33697192
GeneTranscriptPositionBiotype
ENSDARG00000001442 (inppl1b)
inositol polyphosphate phosphatase-like 1b 		ENSDART00000044884 (inppl1b-201) 33619348-33650873 protein_coding
ENSDART00000105745 (inppl1b-202) 33619348-33650873 protein_coding
ENSDARG00000053570 (pr2y4l)
pyrimidinergic receptor P2Y, G-protein coupled, 4-like 		ENSDART00000045018 (pr2y4l-201) 33661401-33662423 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisCIL_0007M2_0001ENSG00000134595ENST00000370536ENSG00000224942ENST00000420490ENSG00000225758ENST00000419392ENSG00000263377ENST00000584172CIL_0007M2_0002ENSMUSG00000045179ENSMUST00000135107ENSMUSG00000067835ENSMUST00000152669ENSMUSG00000081323ENSMUST00000118822ENSMUSG00000081891ENSMUST00000119809ENSMUSG00000087565ENSMUST00000145552CIL_0007M2_0003ENSDARG00000001442ENSDART00000044884ENSDART00000105745ENSDARG00000053570ENSDART00000045018
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisCIL_0007M2_0001ENSG00000134595ENST00000370536ENSG00000224942ENST00000420490ENSG00000225758ENST00000419392ENSG00000263377ENST00000584172CIL_0007M2_0002ENSMUSG00000045179ENSMUST00000135107ENSMUSG00000067835ENSMUST00000152669ENSMUSG00000081323ENSMUST00000118822ENSMUSG00000081891ENSMUST00000119809ENSMUSG00000087565ENSMUST00000145552CIL_0007M2_0003ENSDARG00000001442ENSDART00000044884ENSDART00000105745ENSDARG00000053570ENSDART00000045018
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSG00000134595 ENST00000370536 N/A 0.013±0.00 N/A 0.181±0.16 N/A N/A 0.026±0.00 N/A N/A N/A 0.766±0.71 N/A 1.829±0.22
ENSG00000224942 ENST00000420490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00
ENSG00000225758 ENST00000419392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSG00000263377 ENST00000584172 N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUSG00000045179 ENSMUST00000135107 0.017±0.00 0.028±0.01 N/A 8.989±6.88 0.014±0.00 0.030±0.01 0.023±0.00 0.013±0.00 0.009±0.01 N/A 6.950±2.53 0.761±0.45 0.991±0.46
ENSMUSG00000067835 ENSMUST00000152669 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.009±0.00 N/A 0.033±0.01 0.157±0.09 0.018±0.00
ENSMUSG00000081323 ENSMUST00000118822 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A 0.890±0.00 N/A N/A
ENSMUSG00000081891 ENSMUST00000119809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A
ENSMUSG00000087565 ENSMUST00000145552 0.060±0.00 0.128±0.00 0.014±0.00 0.519±0.00 N/A N/A N/A N/A 0.054±0.00 N/A 0.365±0.20 0.009±0.00 0.235±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSDARG00000001442 ENSDART00000044884 N/A N/A N/A 0.044±0.00 N/A N/A 0.499±0.00 N/A 0.064±0.00 0.363±0.00 N/A N/A N/A
ENSDART00000105745 N/A N/A N/A 0.253±0.25 N/A N/A 0.972±0.17 0.744±0.00 N/A 0.693±0.00 N/A N/A N/A
ENSDARG00000053570 ENSDART00000045018 N/A N/A N/A 0.274±0.00 N/A N/A 0.489±0.06 0.491±0.00 0.065±0.00 0.527±0.00 N/A N/A N/A

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