C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007N3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
LHX9 UCNEbase 9606 1:197596839-198391876
GeneTranscriptPositionBiotype
ENSG00000143355 (LHX9)
LIM homeobox 9 		ENST00000367387 (LHX9-004) 197917399-197935476 protein_coding
ENST00000367388 (LHX9-005) 197917355-197918766 protein_coding
ENST00000367390 (LHX9-001) 197912505-197935478 protein_coding
ENST00000367391 (LHX9-003) 197912491-197932591 protein_coding
ENST00000475727 (LHX9-006) 197912488-197917959 protein_coding
ENST00000561173 (LHX9-007) 197915837-197932266 protein_coding
ENST00000606127 (LHX9-009) 197911902-197917991 protein_coding
ENST00000615520 (LHX9-010) 197912130-197913180 retained_intron
ENSG00000203724 (C1orf53)
chromosome 1 open reading frame 53 		ENST00000367393 (C1orf53-001) 197902647-197907367 protein_coding
ENST00000436652 (C1orf53-002) 197902778-197907367 protein_coding
ENST00000542800 (C1orf53-003) 197905517-197907364 processed_transcript
ENSG00000213046 (EEF1A1P32)
eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 		ENST00000418613 (EEF1A1P32-001) 197688760-197690627 unprocessed_pseudogene
ENSG00000213047 (DENND1B)
DENN/MADD domain containing 1B 		ENST00000235453 (DENND1B-004) 197552255-197775192 protein_coding
ENST00000294737 (DENND1B-008) 197509644-197775307 nonsense_mediated_decay
ENST00000294738 (DENND1B-012) 197658300-197735529 processed_transcript
ENST00000367396 (DENND1B-003) 197552255-197775325 protein_coding
ENST00000391979 (DENND1B-001) 197504748-197583220 protein_coding
ENST00000422998 (DENND1B-010) 197642773-197775633 protein_coding
ENST00000463124 (DENND1B-006) 197545567-197546773 retained_intron
ENST00000468589 (DENND1B-005) 197734009-197775426 retained_intron
ENST00000477581 (DENND1B-009) 197735658-197775696 processed_transcript
ENST00000495550 (DENND1B-011) 197735250-197774607 retained_intron
ENST00000496935 (DENND1B-007) 197605482-197658350 retained_intron
ENST00000620048 (DENND1B-201) 197504751-197775493 protein_coding
ENSG00000224901 (RP11-448G4.4)
 ENST00000440885 (RP11-448G4.4-001) 197757319-197761965 antisense
ENSG00000232824 (PRR13P1)
proline rich 13 pseudogene 1 		ENST00000456678 (PRR13P1-001) 198197779-198198186 processed_pseudogene
ENSG00000233040 (FAM204BP)
family with sequence similarity 204, member B, pseudogene 		ENST00000369171 (FAM204BP-001) 197746751-197747451 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0007N3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
LHX9 UCNEbase 10090 1:138385353-139100523
GeneTranscriptPositionBiotype
ENSMUSG00000019230 (Lhx9)
LIM homeobox protein 9 		ENSMUST00000019374 (Lhx9-002) 138825186-138842457 protein_coding
ENSMUST00000046870 (Lhx9-001) 138830087-138847719 protein_coding
ENSMUST00000093486 (Lhx9-201) 138825186-138847579 protein_coding
ENSMUST00000112026 (Lhx9-005) 138830944-138842429 protein_coding
ENSMUST00000112030 (Lhx9-004) 138827997-138848576 protein_coding
ENSMUSG00000026393 (Nek7)
NIMA (never in mitosis gene a)-related expressed kinase 7 		ENSMUST00000027642 (Nek7-001) 138483837-138619749 protein_coding
ENSMUST00000186017 (Nek7-002) 138485707-138619674 protein_coding
ENSMUST00000187407 (Nek7-004) 138484112-138620218 protein_coding
ENSMUST00000188820 (Nek7-005) 138544191-138619714 processed_transcript
ENSMUST00000191549 (Nek7-003) 138513748-138619704 retained_intron
ENSMUSG00000079283 (2310009B15Rik)
RIKEN cDNA 2310009B15 gene 		ENSMUST00000112025 (2310009B15Rik-201) 138851979-138856854 protein_coding
ENSMUSG00000085361 (Gm16305)
predicted gene 16305 		ENSMUST00000140747 (Gm16305-001) 138991550-138992021 unprocessed_pseudogene
ENSMUSG00000086113 (4930596I21Rik)
 ENSMUST00000152856 (4930596I21Rik-001) 138977657-138979240 sense_intronic
ENSMUSG00000099808 (RP24-214P19.1)
RIKEN cDNA 1700019P21 gene 		ENSMUST00000186955 (RP24-214P19.1-001) 138876272-138876950 lincRNA

Mus musculus Ensembl (GRCm38)

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CIL_0007N3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
LHX9 UCNEbase 7955 22:24476568-25083877
GeneTranscriptPositionBiotype
ENSDARG00000029374 (dennd1b)
DENN/MADD domain containing 1B 		ENSDART00000105614 (dennd1b-201) 24420231-24509855 protein_coding
ENSDART00000134384 (dennd1b-001) 24419319-24468620 protein_coding
ENSDARG00000056966 (nek7)
NIMA (never in mitosis gene a)-related kinase 7 		ENSDART00000079536 (nek7-001) 24831550-24955160 protein_coding
ENSDARG00000056979 (lhx9)
LIM homeobox 9 		ENSDART00000054807 (lhx9-001) 24972414-24979972 protein_coding
ENSDART00000079556 (lhx9-201) 24970015-24979988 protein_coding
ENSDARG00000071437 (ptprc)
protein tyrosine phosphatase, receptor type, C 		ENSDART00000105607 (ptprc-201) 24703749-24794346 protein_coding
ENSDART00000137111 (ptprc-001) 24703759-24727306 protein_coding
ENSDART00000137873 (ptprc-002) 24731384-24794350 protein_coding
ENSDARG00000071439 (C22H1orf53)
chromosome 1 open reading frame 53 		ENSDART00000105613 (C22H1orf53-001) 24991113-24994384 protein_coding
ENSDARG00000090356 (DENND1B (2 of 2))
DENN/MADD domain containing 1B 		ENSDART00000122451 (DENND1B (2 of 2)-201) 25001745-25087130 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007N3_0001ENSG00000143355ENST00000367387ENST00000367388ENST00000367390ENST00000367391ENST00000475727ENST00000561173ENST00000615520ENSG00000203724ENST00000367393ENST00000436652ENST00000542800ENSG00000213046ENST00000418613ENSG00000213047ENST00000235453ENST00000294737ENST00000367396ENST00000391979ENST00000496935ENST00000620048ENSG00000224901ENST00000440885ENSG00000232824ENST00000456678ENSG00000233040ENST00000369171CIL_0007N3_0002ENSMUSG00000019230ENSMUST00000019374ENSMUST00000046870ENSMUST00000093486ENSMUST00000112026ENSMUST00000112030ENSMUSG00000026393ENSMUST00000027642ENSMUST00000186017ENSMUST00000187407ENSMUST00000188820ENSMUST00000191549ENSMUSG00000079283ENSMUST00000112025ENSMUSG00000085361ENSMUST00000140747ENSMUSG00000086113ENSMUST00000152856ENSMUSG00000099808ENSMUST00000186955CIL_0007N3_0003ENSDARG00000029374ENSDART00000105614ENSDART00000134384ENSDARG00000056966ENSDART00000079536ENSDARG00000056979ENSDART00000054807ENSDART00000079556ENSDARG00000071437ENSDART00000105607ENSDART00000137111ENSDARG00000071439ENSDART00000105613ENSDARG00000090356ENSDART00000122451
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143355 ENST00000367387 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A 0.076±0.00 0.006±0.00 0.405±0.26 N/A 0.626±0.52
ENST00000367388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A
ENST00000367390 0.008±0.00 N/A N/A 0.032±0.01 N/A 0.016±0.01 0.019±0.00 0.005±0.00 0.023±0.01 0.049±0.00 N/A N/A 0.008±0.00 N/A
ENST00000367391 N/A 0.036±0.00 0.089±0.00 0.044±0.00 N/A N/A N/A N/A 0.088±0.00 0.062±0.00 N/A 1.473±0.27 N/A 2.487±0.00
ENST00000475727 N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561173 0.047±0.00 N/A N/A N/A 0.010±0.00 N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A
ENST00000606127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.201±0.00 N/A N/A N/A
ENSG00000203724 ENST00000367393 0.204±0.00 0.768±0.00 N/A 0.675±0.00 0.747±0.63 0.330±0.00 1.229±1.09 2.035±0.00 2.377±2.24 N/A 1.161±0.00 1.557±1.13 1.669±0.95 1.347±0.61
ENST00000436652 N/A N/A N/A N/A N/A N/A 0.433±0.00 N/A N/A N/A N/A N/A 0.495±0.00 N/A
ENST00000542800 N/A N/A N/A 1.662±0.00 N/A N/A N/A N/A N/A 0.665±0.00 N/A N/A N/A N/A
ENSG00000213046 ENST00000418613 0.051±0.00 0.018±0.00 0.290±0.00 0.210±0.00 0.291±0.27 0.180±0.17 N/A 0.150±0.07 N/A 0.186±0.12 N/A 0.101±0.12 N/A 0.014±0.01
ENSG00000213047 ENST00000235453 N/A N/A N/A 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000294737 N/A N/A N/A N/A N/A N/A N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A
ENST00000294738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367396 N/A N/A N/A N/A N/A 2.431±0.00 N/A N/A N/A N/A N/A N/A N/A 0.735±0.00
ENST00000391979 0.198±0.00 0.373±0.00 N/A 0.378±0.00 0.662±0.00 0.175±0.00 0.563±0.00 1.570±0.00 0.409±0.00 N/A N/A 0.559±0.33 0.122±0.03 N/A
ENST00000422998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496935 N/A N/A N/A N/A 3.015±0.00 2.574±0.00 N/A N/A 1.505±0.00 N/A N/A N/A N/A N/A
ENST00000620048 0.188±0.00 N/A 1.583±0.00 0.210±0.13 0.350±0.00 1.984±0.00 0.946±0.05 1.071±0.63 0.538±0.37 2.065±0.94 0.531±0.29 0.578±0.08 0.216±0.00 0.433±0.00
ENSG00000224901 ENST00000440885 N/A 0.208±0.00 N/A 0.051±0.00 N/A N/A 0.047±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000232824 ENST00000456678 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A
ENSG00000233040 ENST00000369171 N/A N/A 0.362±0.00 N/A 0.743±0.00 2.933±0.00 0.223±0.00 0.924±0.00 0.090±0.00 0.762±0.00 0.561±0.00 0.501±0.00 N/A 0.016±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019230 ENSMUST00000019374 N/A N/A N/A 3.406±2.40 N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.584±0.20 N/A N/A
ENSMUST00000046870 N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A 0.020±0.00 0.018±0.00 N/A 0.782±0.09 N/A 0.055±0.02
ENSMUST00000093486 N/A N/A N/A 2.126±1.21 N/A N/A 0.007±0.00 N/A 0.015±0.01 N/A 0.006±0.00 0.477±0.16 N/A 0.051±0.01
ENSMUST00000112026 N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A 0.036±0.03 N/A N/A 2.183±0.72 0.004±0.00 0.147±0.06
ENSMUST00000112030 0.051±0.00 0.076±0.03 0.011±0.01 8.277±5.41 N/A 0.040±0.00 0.019±0.00 N/A 0.065±0.07 N/A N/A 1.833±0.83 0.013±0.01 0.346±0.35
ENSMUSG00000026393 ENSMUST00000027642 15.304±2.08 21.921±2.52 12.422±1.21 2.993±0.75 25.432±7.60 14.968±1.94 15.126±1.08 17.177±4.26 8.535±1.48 26.656±3.07 29.340±0.45 16.840±6.68 6.123±3.00 1.336±0.46
ENSMUST00000186017 N/A N/A N/A 1.608±0.00 N/A 5.639±0.13 N/A N/A 4.780±1.15 N/A N/A N/A 2.248±0.18 N/A
ENSMUST00000187407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.245±0.54 2.130±1.07 N/A
ENSMUST00000188820 N/A 15.488±2.66 N/A N/A 26.655±1.24 22.562±5.14 N/A 31.706±0.00 14.763±0.00 30.105±5.52 N/A 21.945±4.85 N/A 2.299±0.00
ENSMUST00000191549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.477±4.49 N/A N/A
ENSMUSG00000079283 ENSMUST00000112025 7.638±2.22 11.099±4.35 8.937±1.16 10.257±6.87 9.453±4.55 10.537±3.54 4.629±1.01 8.089±2.01 7.032±2.77 6.500±0.72 10.044±1.18 9.794±3.56 6.145±2.41 2.882±1.34
ENSMUSG00000085361 ENSMUST00000140747 0.160±0.06 0.248±0.00 N/A 0.605±0.04 0.206±0.07 0.250±0.10 0.122±0.04 0.288±0.12 0.195±0.08 0.273±0.10 N/A 0.660±0.19 0.160±0.00 0.206±0.10
ENSMUSG00000086113 ENSMUST00000152856 N/A N/A 0.171±0.00 N/A N/A N/A N/A 0.133±0.00 0.020±0.00 N/A 0.063±0.00 0.191±0.08 0.145±0.05 1.594±0.65
ENSMUSG00000099808 ENSMUST00000186955 N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.406±1.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029374 ENSDART00000105614 N/A N/A N/A 0.921±0.00 N/A N/A 0.488±0.40 0.599±0.00 0.186±0.00 N/A N/A N/A N/A N/A
ENSDART00000134384 N/A N/A N/A N/A N/A N/A 0.082±0.03 0.204±0.00 0.073±0.00 N/A N/A N/A N/A N/A
ENSDARG00000056966 ENSDART00000079536 N/A N/A N/A 5.717±0.94 N/A N/A 10.711±5.41 6.060±2.04 3.311±0.00 N/A 10.277±0.00 N/A N/A N/A
ENSDARG00000056979 ENSDART00000054807 N/A N/A N/A 14.022±2.02 N/A N/A 0.480±0.00 N/A 0.268±0.00 N/A 0.518±0.00 N/A N/A N/A
ENSDART00000079556 N/A N/A N/A 9.700±0.00 N/A N/A 0.132±0.00 0.151±0.00 N/A N/A 0.642±0.00 N/A N/A N/A
ENSDARG00000071437 ENSDART00000105607 N/A N/A N/A 0.648±0.08 N/A N/A 1.914±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137111 N/A N/A N/A 3.575±1.25 N/A N/A 15.896±3.45 29.639±9.81 0.693±0.00 N/A 7.243±0.00 N/A N/A N/A
ENSDART00000137873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000071439 ENSDART00000105613 N/A N/A N/A 1.305±0.31 N/A N/A 1.037±0.42 2.564±0.00 N/A N/A 1.867±0.00 N/A N/A N/A
ENSDARG00000090356 ENSDART00000122451 N/A N/A N/A 39.464±35.25 N/A N/A 32.413±0.00 53.046±0.00 N/A N/A 0.336±0.00 N/A N/A N/A

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